# Publications & Popular Articles

**Source**: https://physics-of-life.tu-dresden.de/team/pol-groups/friedrich/publications
**Parent**: https://physics-of-life.tu-dresden.de/team/pol-groups/friedrich

## Selected Publications

I. Babenko, N. Kröger, B.M. Friedrich: [Mechanism of branching morphogenesis inspired by diatom silica formation](https://www.pnas.org/doi/full/10.1073/pnas.2309518121), *Proc. Natl. Acad. Sci. U.S.A.* **121**(10): e2309518121, 2024

F. Kolley, C. Sidor, B. Dehapiot, F. Schnorrer, B.M. Friedrich: [Mechanisms of sarcomere assembly in muscle cells inferred from sequential ordering of myofibril components](https://journals.aps.org/prxlife/abstract/10.1103/PRXLife.2.013002), *PRX Life* **2**: 013002, 2024

J. Rode, M. Novak, B.M. Friedrich: [Information theory of chemotactic agents using both spatial and temporal gradient-sensing](https://journals.aps.org/prxlife/abstract/10.1103/PRXLife.2.023012), *PRX Life* **2:** 023012, 2024

H. Morales-Navarrete, H. Nonaka, A. Scholich, F. Segovia-Miranda, W. de Back, K. Meyer, R.L. Bogorad, V. Koteliansky, L. Brusch, Y. Kalaidzidis\*, F. Jülicher\*, B.M. Friedrich\*, M. Zerial\*: [Liquid-crystal organization of liver tissue](https://doi.org/10.7554/eLife.44860.001), *eLife* **8**, e44860, 2019 (\*shared corresponding author)

J.F. Jikeli\*, L. Alvarez\*, B.M. Friedrich\*, L.G. Wilson\*, R. Pascal, R. Colin, M. Pichlo, A. Rennhack, C. Brenker, U.B. Kaupp: [Sperm navigation along helical paths in 3D chemoattractant landscapes](https://doi.org/10.1038/ncomms8985), *Nature Communications* **6**, 7985, 2015 (\*equal contribution)

S. Werner, T. Stückemann, M. Beiran Amigo, J.C. Rink, F. Jülicher, B.M. Friedrich: [Scaling and regeneration of self-organized patterns](https://doi.org/10.1103/PhysRevLett.114.138101), *Phys. Rev. Lett.* **114**, p. 138101, 2015

## Publications

I. Babenko, N. Kröger, B.M. Friedrich: [Mechanism of branching morphogenesis inspired by diatom silica formation](https://www.pnas.org/doi/full/10.1073/pnas.2309518121), *Proc. Natl. Acad. Sci. U.S.A.* **121**(10): e2309518121, 2024

F. Kolley, C. Sidor, B. Dehapiot, F. Schnorrer, B.M. Friedrich: [Mechanisms of sarcomere assembly in muscle cells inferred from sequential ordering of myofibril components](https://journals.aps.org/prxlife/abstract/10.1103/PRXLife.2.013002), *PRX Life* **2**: 013002, 2024

J. Rode, M. Novak, B.M. Friedrich: [Information theory of chemotactic agents using both spatial and temporal gradient-sensing](https://journals.aps.org/prxlife/abstract/10.1103/PRXLife.2.023012), *PRX Life* **2:** 023012, 2024

R.O. Ramakrishnan, B.M. Friedrich: [Learning run-and-tumble chemotaxis with support vector machines](https://iopscience.iop.org/article/10.1209/0295-5075/acd0d3/meta), *EPL* **142:** 47001, 2023

C. Ringers, S. Bialonski, M. Ege, A. Solovev, J.N. Hansen, I. Jeong, B.M Friedrich, N. Jurisch-Yaksi: [Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia](https://elifesciences.org/articles/77701), *eLife* **12**:e77701, 2023

J. Gopalakrishnan, K. Feistel, B.M Friedrich, A. Grapin‐Botton, N. Jurisch‐Yaksi, E. Mass, D.U. Mick, R.-U. Müller, ..., D. Wachten: Emerging principles of primary cilia dynamics in controlling tissue organization and function, *EMBO J.* **42**(21): e113891, 2023

C. Heintze, I. Babenko, J.Z. Suchanova, A Skeffington, B.M Friedrich, N. Kröger: [The molecular basis for pore pattern morphogenesis in diatom silica](https://www.pnas.org/doi/abs/10.1073/pnas.2211549119), Proc Natl Acad Sci U S A 119(49):e2211549119, 2022

R.O. Ramakrishnan, A. Auconi and B.M. Friedrich: [Learning stochastic filtering](https://iopscience.iop.org/article/10.1209/0295-5075/ac9d01/meta), *EPL* **140**: 31002, 2022

A. Auconi, M. Novak and B.M. Friedrich: [Gradient sensing in Bayesian chemotaxis](https://iopscience.iop.org/article/10.1209/0295-5075/ac6620/meta), *EPL* **138**: 12001, 2022

A. Solovev, B.M. Friedrich: [Synchronization in cilia carpets: multiple metachronal waves are stable, but one wave dominates](https://iopscience.iop.org/article/10.1088/1367-2630/ac2ae4), *New J. Phys.* **24**: 013015, 2022

A. Solovev, B.M. Friedrich: [Synchronization in cilia carpets and the Kuramoto model with local coupling: breakup of global synchronization in the presence of noise](https://aip.scitation.org/doi/full/10.1063/5.0075095),  *Chaos: An Interdisciplinary Journal of Nonlinear Science***32** 013124*,* 2022 ([arXiv:2109.08639](https://arxiv.org/abs/2109.08639))

A. Solovev, B.M. Friedrich: Lagrangian Mechanics of Active Systems, *Eur. Phys. J. E* **44**:49, 2021

S. Lange, B.M. Friedrich: Sperm chemotaxis in marine species is optimal at physiological flow rates according theory of filament surfing, *New J. Phys.,* **23:**043026, 2021

M. Novak, B.M. Friedrich: Bayesian gradient sensing in the presence of rotational diffusion, *New J. Phys.* **23**:043026, 2021

S. Lange, B.M. Friedrich: Network permeability changes according to a quadratic power law upon removal of a single edge, *Europhysics Letters* **134** 64002, 2021

Friedrich Striggow, Lidiia Nadporozhskaia, B.M. Friedrich, O.G. Schmidt, M. Medina-Sánchez: Micromotor-mediated sperm constrictions for improved swimming performance, *Eur. Phys. J. E* **44**:67, 2021

A. Gong, S. Rode, G. Gompper, U.B. Kaupp, J. Elgeti, B.M. Friedrich, L. Alvarez: Reconstruction of the 3D beat pattern underlying swimming behaviors of sperm, *Eur. Phys. J. E* **44:**87, 2021

J.A. Kromer, A. Auconi, B.M. Friedrich: Composite search of active particles in three-dimensional space based on non-directional cues, *ChemNanoMat* **7:**1057, 2021

A. Auconi, B.M. Friedrich, A. Giansanti: Fluctuation-response theorem for Kullback-Leibler divergences to quantify causation, *EPL,* **135:**28002, 2021

I. Babenko, B.M. Friedrich, N. Kröger: Structure and Morphogenesis of the Frustule (book chapter), in press at Springer

A. Scholich, S. Syga, H. Morales-Navarrete, F. Segovia-Miranda, H. Nonaka, K. Meyer, W. de Back, L. Brusch, Y. Kalaidzidis, M. Zerial, F. Jülicher, B.M. Friedrich: Quantification of nematic cell polarity in three-dimensional tissues, *PLoS Comp. Biol.* **16**(12): e1008412, 2020

J. Karschau, A. Scholich, J. Wise, H. Morales-Navarette, Y. Kalaidzidis, M. Zerial, B.M. Friedrich: Resilience of three-dimensional sinusoidal networks in liver tissue, *PLoS Comp. Biol.* **16**(6), e1007965, 2020

F. Striggow, M. Medina-Sánchez, V. Magdanz, G.K. Auernhammer, B.M. Friedrich, O.G. Schmidt: Sperm-driven micromotors moving in oviduct fluid and viscoelastic media, *Small* **16**, 2000213, 2020

J.A. Kromer, N. de la Cruz, B.M. Friedrich: Chemokinetic scattering, trapping, and avoidance of active Brownian particles, *Phys. Rev. Lett.* **124**, 118101, 2020

H. Morales-Navarrete, H. Nonaka, A. Scholich, F. Segovia-Miranda, W. de Back, K. Meyer, R.L. Bogorad, V. Koteliansky, L. Brusch, Y. Kalaidzidis\*, F. Jülicher\*, B.M. Friedrich\*, M. Zerial\*: Liquid-crystal organization of liver tissue, *eLife* 8, e44860, 2019 (\*shared corresponding author)

A. Gong, S. Rode, U.B. Kaupp, G. Gompper, J. Elgeti, B.M. Friedrich, and L. Alvarez: The steering gaits of sperm, *Phil. Trans. R. Soc. B.* **375**(1792), 20190149, 2019

A. Thommen\*, S. Werner\*, O. Frank\*, J. Philipp, O. Knittelfelder, Y. Quek, K. Fahmy, A. Shevchenko, B.M. Friedrich, F. Jülicher, Frank, J.C. Rink: Body size-dependent energy storage causes Kleiber’s law scaling of the metabolic rate in planarians, *eLife* **8**, e38187, 2019

N. Biere, M. Ghaffar, A. Doebbe, D. Jäger, N. Rothe, B.M. Friedrich, R. Hofestädt, F. Schreiber, O. Kruse, B. Sommer: Heuristic modeling and 3D stereoscopic visualization of a *Chlamydomonas reinhardtii* cell, *Journal of Integrative Bioinformatics* **15**(2), 2018

J. Karschau, M. Zimmerling, B.M. Friedrich: Renormalization group theory for percolation in time-varying networks, *Scientific Reports* 8, 8011, 2018

B.M. Friedrich: Load response of shape-changing microswimmers scales with their energy efficiency, *Phys. Rev. E* **97**, 042416, 2018

D.A. Hidalgo, S. Werner, O. Wartlick, M. González-Gaitán, B.M. Friedrich, F. Jülicher: Dynamic gradient scaling as a critical point of growth control, *Phys. Rev. Lett.* **120**, 198102, 2018

J. A. Kromer, S. Märcker, S. Lange, C. Baier, B.M. Friedrich: Decision making for sperm chemotaxis in the presence of noise, *PLoS Comp. Biol.* **14**(4): e1006109, 2018

## Preprints/Submitted

H. Hamzeh, A. Gong, M. Balbach, D. Fridman, H.G. Körschen, R. Pascal, F. Lavryk, A. Rennhack, R. Seifert, A. Hernandez-Clavijo, S. Pifferi, V. Dusend, B.K. Fleischmann, P. Sasse, A. Menini, B.M. Friedrich\***,** L. Alvarez\*, U.B. Kaupp\*: Deciphering rapid cell signaling and remote control of cell motility by reverse opto-chemical engineering, *sub judice*

M. Striegler, B.M. Friedrich\*, Stefan Diez\*, V.F. Geyer\*: Twist-torsion coupling in beating axonemes, *sub judice* (bioRxiv [10.1101/2024.03.18.585533v2](https://www.biorxiv.org/content/10.1101/2024.03.18.585533v2))

A. Sharma, B.M. Friedrich\*, Veikko F. Geyer\*: Active fluctuations of axoneme oscillations scale with number of dynein motors. *submitted*

## Dissertations

Francine Kolley: [Physical principles of pattern formation during myofibrillogenesis](https://nbn-resolving.org/urn:nbn:de:bsz:14-qucosa2-891868), 2023

Iaroslav Babenko: [Analysis and mathematical modeling of silica morphogenesis in diatoms](https://nbn-resolving.org/urn:nbn:de:bsz:14-qucosa2-891868), 2023

Anton Solovev: [Hydrodynamic synchronization in cilia carpets and its robustness to noise and perturbations](https://nbn-resolving.org/urn:nbn:de:bsz:14-qucosa2-776812), 2021

Andre Scholich: [Biaxial Nematic Order in Liver Tissue](https://physics-of-life.tu-dresden.de/fileadmin/core-group-files/friedrich/documents/andre-scholich--biaxial-nematic-order-in-liver-tissue-2018.pdf), 2018

Gary S. Klindt: [Hydrodynamics of Flagellar Swimming and Synchronization](https://cfaed.tu-dresden.de/files/user/bfriedrich/papers/gary_klindt_phd.pdf), 2017

Benjamin M. Friedrich: [Nonlinear dynamics and fluctuations in biological systems](https://cfaed.tu-dresden.de/files/user/bfriedrich/papers/friedrich_habilitations_schrift_final.pdf), 2017 (Habilitation thesis)

Steffen Werner: [Growth and Scaling during Development and Regeneration](https://nbn-resolving.org/urn:nbn:de:bsz:14-qucosa-208033), 2015

Benjamin M. Friedrich: [Chemotaxis of Sperm Cells](https://cfaed.tu-dresden.de/files/user/bfriedrich/papers/friedrich_chemotaxis_sperm_cells_phd_2009.pdf), 2009

## Popular articles in German

[Schlagkräftiger Mikroantrieb](https://cfaed.tu-dresden.de/files/user/bfriedrich/papers/friedrich_der_schlag_machts_physik_journal_2017.pdf) – popular article on dynamics of cilia and flagella in Physik-Journal 12/2017 © Wiley-VCH Verlag

[Grünalgen wackeln sich in den Takt](https://cfaed.tu-dresden.de/files/user/bfriedrich/papers/friedrich_chlamydomonas_populaer_physik_in_unserer_zeit_2014.pdf) – popular article on flagellar synchronization

[Eine schwimmende Sinneszelle](https://cfaed.tu-dresden.de/files/user/bfriedrich/papers/friedrich_kaupp_spermien_schwimmende_sinneszelle_phiuz_2011.pdf) – popular article on flagellar swimming and steering

[Youtube video of synchronizing metronomes](http://www.youtube.com/watch?v=YGYsGGqXzxE)

## More Information

[Public Google Scholar profile](https://scholar.google.com/citations?hl=en&user=gTGjuBwAAAAJ&view_op=list_works&sortby=pubdate)