Publications
Source: https://physics-of-life.tu-dresden.de/research/publications Parent: https://physics-of-life.tu-dresden.de/
1,537 publication(s) listed in total – filter:
/// select PoL contributor Adams, Ellen Alberti, Simon Alert, Ricard Barriga, Elias Becker, Catherina G. Brand, Michael Brugués, Jan Buchholz, Frank Campàs, Otger Coskun, Ünal Czarske, Jürgen Dachselt, Raimund Dahmann, Christian Diez, Stefan Doyle, Adele Ebisuya, Miki Fahmy, Karim Fischer-Friedrich, Elisabeth Friedrich, Benjamin Gerri, Claudia Grapin-Botton, Anne Grill, Stephan W. Gumhold, Stefan Harrington, Heather Honigmann, Alf O. Huch, Meritxell Hyman, Anthony A. Jahnel, Marcus Jülicher, Frank Kröger, Nils Kurzthaler, Christina Mateus, Rita Modes, Carl Myers, Eugene W. Nikoubashman, Arash Politi, Yael Popović, Marko Rodenfels, Jonathan Sbalzarini, Ivo F. Schießel, Helmut Schlierf, Michael Solimena, Michele Sommer, Jens-Uwe Stewart, Francis Tang, Dora Timme, Marc Tomancak, Pavel Tóth-Petróczy, Ágnes Veenvliet, Jesse Voigt, Axel von Appen, Alexander Werner, Carsten Yang, Xingbo Yun, Maximina Zechner, Christoph Zerial, Marino Zhang, Yixin (Alumni Group) Busskamp, Volker (Alumni Group) Dye, Natalie (Alumni Group) Guck, Jochen (Alumni Group) Haase, Robert (Alumni Group) Hermann, Andreas (Alumni Group) Jug, Florian (Alumni Group) Knust, Elisabeth (Alumni Group) Kreysing, Moritz (Alumni Group) Kurzchalia, Teymuras (Alumni Group) Mansfeld, Jörg (Alumni Group) Norden, Caren (Alumni Group) Pigino, Gaia (Alumni Group) Rink, Jochen ×
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2026
10 publication(s) listed
Hannes Ausserwöger, Rob Scrutton, Charlotte M Fischer, Tomas Sneideris, Daoyuan Qian, Ella De Csilléry, Ieva Baronaite, Kadi L Saar, Alan Z Białek, Marc Oeller, Georg Krainer, Titus M Franzmann, Sina Wittmann, Juan M Iglesias-Artola, Gaetano Invernizzi, Anthony A Hyman, Simon Alberti, Nikolai Lorenzen, Tuomas PJ Knowles\ Biomolecular condensates sustain pH gradients at equilibrium through charge neutralization\ Nature Chemistry (Jan 29, 2026) \ DOI: 10.1038/s41557-025-02039-9
Melissa Rinaldin, Alison Kickuth, Adam Lamson, Benjamin Dalton, Yitong Xu, Pavel Mejstřík, Stefano Di Talia, Jan Brugués\ Robust cytoplasmic partitioning by solving a cytoskeletal instability\ Nature (Jan 28, 2026) \ DOI: 10.1038/s41586-025-10023-z
Javier Bregante, Flaminia Kaluthantrige Don, Fabian Rost, André Gohr, Germán Belenguer, Franziska Baenke, Dylan Liabeuf, Jessie Pöche, Clemens Schafmayer, Michaela Wilsch-Bräuninger, Sebastian Hinz, Kevin O’Holleran, Daniel E Stange, Meritxell Huch\ Human liver cholangiocyte organoids capture the heterogeneity of in vivo liver ductal epithelium\ Cell Reports (Jan 27, 2026) \ DOI: 10.1016/j.celrep.2025.116786
Jack Leslie, Kishore A Krishnamurthy, Indresh K Gopalsamy, Patricia Inacio, Meritxell Huch, Suchira Gallage, Fiona Oakley, Michele Vacca\ Metabolic dysfunction-associated steatotic liver disease and steatohepatitis-associated hepatocarcinoma preclinical models\ Nature Reviews Gastroenterology & Hepatology (Jan 26, 2026) \ DOI: 10.1038/s41575-025-01162-9
Rashmiparvathi Keshara, Karolina Kuodyte, Antje Janosch, Cordula Andree, Marc Bickle, Martin Stöter, Rico Barsacchi, Yung Hae Kim, Anne Grapin-Botton\ High-content screening of organoids reveals the mechanisms of human pancreas acinar specification\ Cell Stem Cell (Jan 21, 2026) \ DOI: 10.1016/j.stem.2025.12.023
Sukanta Mukherjee, Enrico Skoruppa, Holger Merlitz, Jens-Uwe Sommer, Helmut Schiessel\ A Self-Organized Liquid Reaction Container for Cellular Memory\ Advanced Science (Jan 12, 2026) \ DOI: 10.1002/advs.202512500
Liyuan Sui, Elisabeth Fischer-Friedrich, Christian Dahmann\ Extracellular matrix restrains cell-cycle progression by nuclear exclusion of Yorkie in Drosophila\ Current Biology (Jan 8, 2026) \ DOI: 10.1016/j.cub.2025.11.079
N Narinder, Elisabeth Fischer-Friedrich\ Time Irreversibility, Entropy Production, and Effective Temperature Are Independently Regulated in the Actin Cortex of Living Cells\ Physical Review X (Jan 8, 2026) \ DOI: 10.1103/5zyn-kgs3
Alison Kickuth, Urša Uršič, Michael F Staddon, Jan Brugués\ A mechanical ratchet drives unilateral cytokinesis\ Nature (Jan 7, 2026) \ DOI: 10.1038/s41586-025-09915-x
Ksenia Kuznetsova, Maxim Scheremetjew, Jialin Yin, HongKee Moon, Diego A Vargas, Anna Hadarovich, Natasha Lewis, Carsten Hoege, Chi Fung Willis Chow, David Kuster, Jik Nijssen, Alberto Hernandez-Armendariz, Jonathan C Savage, Yu Wei, Silja Zedlitz, Hari Raj Singh, Soumyadeep Ghosh, Allysa P Kemraj, Lena Hersemann, Anthony A Hyman, Diana M Mitrea, Agnes Toth-Petroczy\ CD-CODE 2.0: an enhanced condensate knowledgebase integrating pathobiology, condensate modulating drugs, and host–pathogen interactions\ Nucleic Acid Research (Jan 6, 2026) \ DOI: 10.1093/nar/gkaf1104
2025
119 publication(s) listed
Julian Kompa, Lars J Dornfeld, Nicola Porzberg, Soohyen Jang, Silja Zedlitz, Simon H Lilje, Claudia Catapano, David Jocher, Lukas Merk, Carsten Hoege, Runyu Mao, Jonas Wilhelm, Marina S Dietz, Miroslaw Tarnawski, Julien Hiblot, Anthony A Hyman, Mike Heilemann, Kai Johnsson\ Fast, Bright, and Reversible Fluorescent Labeling of Rhodamine-Binding Proteins\ Journal of the American Chemical Society (Dec 30, 2025) \ DOI: 10.1021/jacs.5c18083
Byung Ho Lee, Kana Fuji, Heike Petzold, Phil Seymour, Siham Yennek, Coline Schewin, Allison Lewis, Daniel Riveline, Tetsuya Hiraiwa, Masaki Sano, Anne Grapin-Botton\ Permeability-driven pressure and cell proliferation control lumen morphogenesis in pancreatic organoids\ Nature Cell Biology (Dec 19, 2025) \ DOI: 10.1038/s41556-025-01832-5
Francine Kolley-Köchel, Frank Schnorrer, Benjamin M Friedrich\ The physical basis of sarcomere self-assembly\ Biophysics Reviews (Dec 17, 2025) \ DOI: 10.1063/5.0281811
Lei Yuan, Sagarika Dawka, Yohan Kim, Anke Liebert, Fabian Rost, Robert Arnes-Benito, Franziska Baenke, Christina Götz, David Long Hin Tsang, Andrea Schuhmann, Anna Shevchenko, Roberta Rezende de Castro, Seunghee Kim, Aleksandra Sljukic, Anna M Dowbaj, Andrej Shevchenko, Daniel Seehofer, Dongho Choi, Georg Damm, Daniel E Stange, Meritxell Huch\ Human assembloids recapitulate periportal liver tissue in vitro\ Nature (Dec 17, 2025) \ DOI: 10.1038/s41586-025-09884-1
Anna Hadarovich, Maxim Scheremetjew, Hari Raj Singh, HongKee Moon, Lena Hersemann, Agnes Toth-Petroczy\ PICNIC web server for predicting proteins involved in biomolecular condensates\ Bioinformatics (Dec 1, 2025) \ DOI: 10.1093/bioinformatics/btaf647
Natalia Lyubaykina, Dunja Knapp, Pietro Tardivo, Maximilian Kotz, Tatiana Sandoval-Guzmán, Benjamin M Friedrich\ Static morphogen scaling enables proportional growth in a tissue growth model inspired by axolotl limb regeneration\ Proceedings of the National Academy of Sciences (Nov 20, 2025) \ DOI: 10.1073/pnas.2503086122
Jonathan Bauermann, Giacomo Bartolucci, Job Boekhoven, Frank Jülicher, Christoph A Weber\ Critical transition between intensive and extensive active droplets\ Physical Review X (Nov 12, 2025) \ DOI: 10.1103/4nnd-tdky
Sofia Moreira, Artemis G Korovesi, Elias H Barriga\ Sox8 is essential for vertebrate gastrulation\ EMBO Rep 26, 6179–6208 (online: Nov 10, 2025) \ DOI: 10.1038/s44319-025-00617-z
Jurek Schultz, Purva A Patel, Rita Aires, Leah Wissing, Patrick Glatte, Michael Seifert, Marc Gentzel, Guido Fitze, Adele M Doyle, Tatiana Sandoval-Guzmán\ Human fingertip regeneration follows clinical phases with distinct proteomic signatures\ npj Regenerative Medicine (Nov 5, 2025) \ DOI: 10.1038/s41536-025-00441-y
Collective migration of epithelial cells in the presence of regularly spaced obstacles\ Collective migration of epithelial cells in the presence of regularly spaced obstacles\ Communications Physics (Oct 30, 2025) \ DOI: 10.1038/s42005-025-02359-9
Juliane Simmchen, Daniel Gordon, John MacKenzie, Ignacio Pagonabarraga, Christina C Roggatz, Robert G Endres, Zuyao Xiao, Benjamin M Friedrich, Tian Qiu, Kevin J Painter, Ramin Golestanian, Claudia Contini, Mehmet Can Ucar, Gilad Yossifon, Jens Uwe Sommer, Wouter‐Jan Rappel, Kirsty Y Wan, Judith Armitage, Robert Insall\ Perspective on interdisciplinary approaches on chemotaxis\ Angewandte Chemie International Edition (Oct 28, 2025) \ DOI: 10.1002/anie.202504790
Sagnik Garai, Ursy Makanga, Akhil Varma, Christina Kurzthaler\ Hydroelastic scattering and trapping of microswimmers\ Physical Review Research (Oct 3, 2025) \ DOI: 10.1103/rcdx-gftq
Basusree Ghosh, Patrick M. McCall, Kristian Kyle Le Vay, Archishman Ghosh, Lars Hubatsch, David T. Gonzales, Jan Brugués, Hannes Mutschler, T-Y. Dora Tang\ RNA-peptide interactions tune the ribozyme activity within coacervate microdroplet dispersions\ Nature Communications (Oct 1, 2025) \ DOI: 10.1038/s41467-025-63656-z
Jonathan Bauermann, Giacomo Bartolucci, Christoph A. Weber, Frank Jülicher\ Theory of Reversed Ripening in Active Phase Separating Systems\ (Oct 1, 2025) \ DOI: 10.1103/f5x9-wp3g
Lucas Ribas, Rita Mateus\ Start-Shape-Stop: Cell communication mechanisms controlling organ size\ Seminars in Cell & Developmental Biology (Oct 1, 2025) \ DOI: 10.1016/j.semcdb.2025.103641
Jonathan Bauermann, Giacomo Bartolucci, Christoph A Weber, Frank Jülicher\ Theory of reversed ripening in active phase separating systems\ Physical Review Letters (Oct 1, 2025) \ DOI: 10.1103/f5x9-wp3g
Shao-Zhen Lin, Frank Jülicher, Jacques Prost, Jean-François Rupprecht\ Spontaneous flows in active smectics with dislocations\ The European Physical Journal Special Topics (Sep 13, 2025) \ DOI: 10.1140/epjs/s11734-025-01904-5
Camilo AS Afanador, Stéphane Urcun, Ivo F Sbalzarini, Stéphane PA Bordas, Olga Barrera, Mohammad Mahdi Rajabi, Romain Seil, Anas Obeidat\ Mechanics of knee meniscus results from precise balance between material microstructure and synovial fluid viscosity\ PLoS One (Sep 11, 2025) \ DOI: 10.1371/journal.pone.0304440
Syuan-Ku Hsiao, Markus Mukenhirn, Carsten Werner, Alf Honigmann, Elisha Krieg\ Reconfigurable Microenvironments Uncover Mechano-Sensing Timescales and Direct Cell Polarity\ Advanced Functional Materials (Sep 6, 2025) \ DOI: 10.1002/adfm.202513028
Subham Biswas, Rahul Grover, Cordula Reuther, Chetan S Poojari, Reza Shaebani, Shweta Nandakumar, Mona Grünewald, Amir Zablotsky, Jochen S Hub, Stefan Diez, Karin John, Laura Schaedel\ Tau accelerates tubulin exchange in the microtubule lattice\ Nature Physics (Sep 4, 2025) \ DOI: 10.1038/s41567-025-03003-7
Patrick M. McCall, Kyoohyun Kim, Anna Shevchenko, Martine Ruer-Gruß, Jan Peychl, Jochen Guck, Andrej Shevchenko, Anthony A. Hyman, Jan Brugués\ A label-free method for measuring the composition of multicomponent biomolecular condensates\ Nature Chemistry (Sep 3, 2025) \ DOI: 10.1038/s41557-025-01928-3
Jana Sievers-Liebschner, Ron Dockhorn, Jens Friedrichs, Thomas Kurth, Peter Fratzl, Jens-Uwe Sommer, Carsten Werner, Uwe Freudenberg\ Unravelling the molecular network structure of biohybrid hydrogels\ Materials Today Bio, 102249 (Aug 26, 2025) \ DOI: 10.1016/j.mtbio.2025.102249
Jannik Rothkegel, Sylvia Kaufmann, Michaela Wilsch-Bräuninger, Catarina Lopes, Rita Mateus\ Purine Molecular Interactions Determine Anisotropic Shape of Zebrafish Biogenic Crystals\ Small Methods (Aug 21, 2025) \ DOI: 10.1002/smtd.202401956
Juan M Iglesias-Artola, Kristin Böhlig, Kai Schuhmann, Katelyn C Cook, H Mathilda Lennartz, Milena Schuhmacher, Pavel Barahtjan, Cristina Jiménez López, Radek Šachl, Vannuruswamy Garikapati, Karina Pombo-Garcia, Annett Lohmann, Petra Riegerová, Martin Hof, Björn Drobot, Andrej Shevchenko, Alf Honigmann, André Nadler\ Quantitative imaging of lipid transport in mammalian cells\ Nature (Aug 20, 2025) \ DOI: 10.1038/s41586-025-09432-x
Hannes Ausserwöger, Ella de Csilléry, Daoyuan Qian, Georg Krainer, Timothy J Welsh, Tomas Sneideris, Titus M Franzmann, Seema Qamar, Nadia A Erkamp, Jonathon Nixon-Abell, Mrityunjoy Kar, Peter St George-Hyslop, Anthony A Hyman, Simon Alberti, Rohit V Pappu, Tuomas PJ Knowles\ Quantifying collective interactions in biomolecular phase separation\ Nature Communications volume 16, Article number: 7724 (Aug 19, 2025) \ DOI: 10.1038/s41467-025-62437-y
Simon Alberti, Paolo Arosio, Robert B Best, Steven Boeynaems, Danfeng Cai, Rosana Collepardo-Guevara, Gregory L Dignon, Rumiana Dimova, Shana Elbaum-Garfinkle, Nicolas L Fawzi, Monika Fuxreiter, Amy S Gladfelter, Alf Honigmann, Ankur Jain, Jerelle A Joseph, Tuomas PJ Knowles, Keren Lasker, Edward A Lemke, Kresten Lindorff-Larsen, Reinhard Lipowsky, Jeetain Mittal, Samrat Mukhopadhyay, Sua Myong, Rohit V Pappu, Karsten Rippe, Tatyana A Shelkovnikova, Anthony G Vecchiarelli, Susanne Wegmann, Huaiying Zhang, Mingjie Zhang, Chloe Zubieta, Markus Zweckstetter, Dorothee Dormann, Tanja Mittag\ Current practices in the study of biomolecular condensates: a community comment\ Nature Communications volume 16, Article number: 7730 (Aug 19, 2025) \ DOI: 10.1038/s41467-025-62055-8
Custodio O. Nunes, Elias H. Barriga\ Bioelectricity in Morphogenesis\ Annual Review of Cell and Developmental Biology 41 (Aug 19, 2025) \ DOI: 10.1146/annurev-cellbio-101323-032747
Koen R Storm, Caroline Körösy, Enrico Skoruppa, Stefanie D Pritzl, Pauline J Kolbeck, Willem Vanderlinden, Helmut Schiessel, Jan Lipfert\ The Effects of DMSO on DNA Conformations and Mechanics\ Biophysical Journal (Aug 19, 2025) \ DOI: 10.1016/j.bpj.2025.06.04
Liyuan Sui, Christian Dahmann\ Morphogenesis: Sticking together and holding apart to shape a globular organ\ Current Biology 35 (16), R801-R803 (Aug 18, 2025) \ DOI: 10.1016/j.cub.2025.06.074
Sakurako Tanida, Kana Fuji, Linjie Lu, Tristan Guyomar, Byung Ho Lee, Alf Honigmann, Anne Grapin-Botton, Daniel Riveline, Tetsuya Hiraiwa, Makiko Nonomura, Masaki Sano\ Predicting organoid morphology through a phase field model: insights into cell division and lumenal pressure\ PLOS Computational Biology 21 (8), e1012090 (Aug 18, 2025) \ DOI: 10.1371/journal.pcbi.1012090
Gina Dimari, Yueyuan Hu, Annika Frenzel, Anke Fuchs, Alexander A. Wurm, Elisabeth Fischer-Friedrich\ Mesenchymal-epithelial transition reduces proliferation but increases immune evasion in tumor spheroids\ iScience (Aug 15, 2025) \ DOI: 10.1016/j.isci.2025.113023
Manfred F Maitz, Robin Lenz, Steven Winkler, Mara F Abschke, Carsten Werner, Dieter Fischer\ Weathered microplastics in human blood: unraveling the effect of structural changes at the particle surface on coagulation and platelet activation\ Microplastics and Nanoplastics (Aug 7, 2025) \ DOI: 10.1186/s43591-025-00139-4
Ben Jeffrey Gross, Johannes Richard Soltwedel, Elijah Shelton, Carlos Gomez, Otger Campàs\ STRESS, an automated geometrical characterization of deformable particles for in vivo measurements of cell and tissue mechanical stresses\ Scientific Reports volume 15, Article number: 28599 (Aug 5, 2025) \ DOI: 10.1038/s41598-025-13419-z
Jingjie Yang, Heidi Fang, Jagdeep Dhesi, Iris HR Yoon, Joshua A Bull, Helen M Byrne, Heather A Harrington, Gillian Grindstaff\ Topological classification of tumour-immune interactions and dynamics\ (Aug 5, 2025) \ DOI: 10.1007/s00285-025-02253-6
Anaïs Bailles, Giulia Serafini, Heino Andreas, Christoph Zechner, Carl D. Modes, and Pavel Tomancak\ Anisotropic stretch biases the self-organization of actin fibers in multicellular Hydra aggregates\ PNAS, 122 (32) e2423437122 (Aug 4, 2025) \ DOI: 10.1073/pnas.2423437122
Anna Hadarovich, David Kuster, Maria Luisa Romero Romero, Agnes Toth-Petroczy\ On the Evolution of Biomolecular Condensates: From Prebiotic Origins to Subcellular Diversity\ Annual Review of Cell and Developmental Biology (Jul 31, 2025) \ DOI: 10.1146/annurev-cellbio-101123-051723
Matthew E Black, Chenyi Fei, Ricard Alert, Ned S Wingreen, Joshua W Shaevitz\ Capillary interactions drive the self-organization of bacterial colonies\ Nature Physics (Jul 28, 2025) \ DOI: 10.1038/s41567-025-02965-y
Xiao Yan, David Kuster, Priyesh Mohanty, Jik Nijssen, Karina Pombo-García, Jorge Garcia Morato, Azamat Rizuan, Titus M Franzmann, Aleksandra Sergeeva, Anh M Ly, Feilin Liu, Patricia M Passos, Leah George, Szu-Huan Wang, Jayakrishna Shenoy, Helen L Danielson, Busra Ozguney, Alf Honigmann, Yuna M Ayala, Nicolas L Fawzi, Dennis W Dickson, Wilfried Rossoll, Jeetain Mittal, Simon Alberti, Anthony A Hyman\ Intra-condensate demixing of TDP-43 inside stress granules generates pathological aggregates\ Cell (Jul 24, 2025) \ DOI: 10.1016/j.cell.2025.04.039
K. Yanín Guerra Santillán, Christian Dahmann, Elisabeth Fischer-Friedrich\ ECM proteins shape topographical patterns in the basement membrane of Drosophila wing discs\ Matrix Biology (Jul 18, 2025) \ DOI: 10.1016/j.matbio.2025.06.003
Rakesh Chatterjee, Hui-Shun Kuan, Frank Jülicher, Vasily Zaburdaev\ Nonequilibrium Structure and Relaxation in Active Microemulsions\ Physical Review Letters 135 (3), 038401 (Jul 15, 2025) \ DOI: 10.1103/jfm6-8h9s
Justina Stark, Rohit Krishnan Harish, Ivo Fabian Sbalzarini, Michael Brand\ Morphogen gradients are regulated by porous media characteristics of the developing tissue\ Development (Jul 14, 2025) \ DOI: 10.1242/dev.204312
Yanis Baouche, Christina Kurzthaler\ Optimal first-passage times of active Brownian particles under stochastic resetting\ Soft Matter (Jul 10, 2025) \ DOI: 10.1039/D5SM00340G
Clement Rodier, Ian D. Estabrook, Eunice HoYee Chan, Gavin Rice, Vincent Loreau, Stefan Raunser, Dirk Görlich, Benjamin M. Friedrich, and Frank Schnorrer\ Muscle growth by sarcomere divisions\ Science Advances, Vol 11, Issue 28 (Jul 9, 2025) \ DOI: 10.1126/sciadv.adw9445
Linjie Lu, Kana Fuji, Tristan Guyomar, Michèle Lieb, Marie André, Sakurako Tanida, Makiko Nonomura, Tetsuya Hiraiwa, Yara Alcheikh, Siham Yennek, Heike Petzold, Cecilie Martin-Lemaitre, Anne Grapin-Botton, Alf Honigmann, Masaki Sano, Daniel Riveline\ Generic comparison of lumen nucleation and fusion in epithelial organoids with and without hydrostatic pressure\ Nature Communications volume 16, Article number: 6307 (Jul 8, 2025) \ DOI: 10.1038/s41467-025-60780-8
Pierre Bouvet, Carlo Bevilacqua, Yogeshwari Ambekar, Giuseppe Antonacci, Joshua Au, Silvia Caponi, Sophie Chagnon-Lessard, Juergen Czarske, Thomas Dehoux, Daniele Fioretto, Yujian Fu, Jochen Guck, Thorsten Hamann, Dag Heinemann, Torsten Jähnke, Hubert Jean-Ruel, Irina Kabakova, Kristie Koski, Nektarios Koukourakis, David Krause, Salvatore La Cavera III, Timm Landes, Jinhao Li, Hadi Mahmodi, Jeremie Margueritat, Maurizio Mattarelli, Michael Monaghan, Darryl R. Overby, Fernando Perez-Cota, Emanuele Pontecorvo, Robert Prevedel, Giancarlo Ruocco, John Sandercock, Giuliano Scarcelli, Filippo Scarponi, Claudia Testi, Peter Török, Lucie Vovard, Wolfgang J. Weninger, Vladislav Yakovlev, Seok-Hyun Yun, Jitao Zhang, Francesca Palombo, Alberto Bilenca, and Kareem Elsayad\ Consensus statement on Brillouin light scattering microscopy of biological materials\ Nature Photonics, Volume 19 (Jul 3, 2025) \ DOI: 10.1038/s41566-025-01681-6
Stephanie Klinghammer, Taufhik Hossain Tonmoy, Željko Janićijević, Manfred F Maitz, Sascha Balakin, Marta Vicini, Leif Riemenschneider, Luis-Antonio Panes-Ruiz, Rebecca Bockholt, Lars Heubner, Peter Markus Spieth, Carsten Werner, Bergoi Ibarlucea, Larysa Baraban, Gianaurelio Cuniberti\ Hemocompatible Coatings of Catheters Equipped with Electrochemical Sensors for Real-Time Monitoring of Critical Parameters in the Blood\ ACS Applied Polymer Materials (Jul 3, 2025) \ DOI: 10.1021/acsapm.5c01708
Xinyi Yang, Teresa Ferraro, Kelly Molnar, Julien Pontabry, Sam-Rayden Malanda, Nicola Maghelli, Loïc Royer, Stephan W Grill, Gene Myers, Silvia Grigolon, Michel Labouesse\ Repeated extrinsic and anisotropic mechanical inputs promote C. elegans polarized adherens junction elongation\ Developmental Cell (Jul 2, 2025) \ DOI: 10.1016/j.devcel.2025.06.012
Vaidehi Londhe, Manfred F. Maitz, Triantafyllos Chavakis, Carsten Werner, Alessia C. G. Weiss, Quinn A. Besford\ Coagulation Matters: ATIII-Enriched Biomolecular Corona Enhances the Hemocompatibility of PEG Nanoparticles\ Advanced Healthcare Materials, 2501431 (Jun 30, 2025) \ DOI: 10.1002/adhm.202501431
Theresia Gutmann, David Kuster, Anthony A Hyman\ SARS-CoV-2 nucleocapsid protein directly prevents cGAS–DNA recognition through competitive binding\ Proceedings of the National Academy of Sciences 122 (26), e2426204122 (Jun 23, 2025) \ DOI: 10.1073/pnas.2426204122
Davide Breoni, Christina Kurzthaler, Benno Liebchen, Hartmut Löwen, Suvendu Mandal\ Giant activity-induced elasticity in entangled polymer solutions\ Nature Communiactions (Jun 12, 2025) \ DOI: 10.1038/s41467-025-60210-9
Ido Lavi, Ricard Alert, Jean-François Joanny, Jaume Casademunt\ Nonlinear spontaneous flow instability in active nematics\ Phys. Rev. Lett. 134, 238301 (Jun 9, 2025) \ DOI: 10.1103/PhysRevLett.134.238301
Liyuan Sui, Christian Dahmann\ Protocol for long-term ex vivo cultivation and imaging of Drosophila imaginal discs\ STAR Protocols (Jun 9, 2025) \ DOI: 10.1016/j.xpro.2025.103876
Verena J Kast, Sandra Hauser, Ali Nadernezhad, Dagmar Pette, Manfred F Maitz, Andreas Petzold, Andreas Dahl, Michael Seifert, Katja Eubler, Artur Mayerhofer, Jens Pietzsch, Franziska Baenke, Daniel E Stange, Carsten Werner, Daniela Loessner\ A biomaterial-based platform of pancreatic cancer reveals kallikrein-related peptidase 6 (KLK6) as a mediator of neutrophil recruitment and immunosuppression\ Biomaterials 324, 123456 (Jun 9, 2025) \ DOI: 10.1016/j.biomaterials.2025.123456
Gonen Golani, Manas Seal, Mrityunjoy Kar, Anthony A Hyman, Daniella Goldfarb, Samuel Safran\ Mesoscale properties of protein clusters determine the size and nature of liquid-liquid phase separation (LLPS)\ Communications Physics volume 8, Article number: 226 (Jun 2, 2025) \ DOI: 10.1038/s42005-025-02134-w
Meri Abgaryan, Xinning Cui, Nandu Gopan, Gabriel Della Maggiora, Artur Yakimovich, Ivo F Sbalzarini\ Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy\ Small Methods (Jun 2, 2025) \ DOI: 10.1002/smtd.202401900
Ralf Zimmermann, Mirko Nitschke, Marten Samulowitz, Nicholas R Dennison, Carsten Werner\ Time-of-Flight Secondary Ion Mass Spectrometry-Partial Least Square Regression for Quantifying Interleukin-8 in Biopolymer Matrices\ Advanced NanoBiomed Research (Jun 2, 2025) \ DOI: 10.1002/anbr.202500066
Anna M. Dowbaj, Aleksandra Sljukic, Armin Niksic, Cedric Landerer, Julien Delpierre, Haochen Yang, Aparajita Lahree, Ariane C. Kuhn, David Beers, Helen M. Byrne, Sarah Seifert, Heather A. Harrington, Marino Zerial, and Meritxell Huch\ Mouse liver assembloids model periportal architecture and biliary fibrosis\ Nature (May 29, 2025) \ DOI: 10.1038/s41586-025-09183-9
Chi Fung Willis Chow, Maxim Scheremetjew, HongKee Moon, Soumyadeep Ghosh, Anna Hadarovich, Lena Hersemann, Agnes Toth-Petroczy\ SHARK: web server for alignment-free homology assessment for intrinsically disordered and unalignable protein regions\ Nucleic Acids Research (May 21, 2025) \ DOI: 10.1093/nar/gkaf408
Hiroyuki Uechi, Sindhuja Sridharan, Jik Nijssen, Jessica Bilstein, Juan M. Iglesias-Artola, Satoshi Kishigami, Virginia Casablancas-Antras, Ina Poser, Eduardo J. Martinez, Edgar Boczek, Michael Wagner, Nadine Tomschke, António M. de Jesus Domingues, Arun Pal, Thom Doeleman, Sukhleen Kour, Eric Nathaniel Anderson, Frank Stein, Hyun O. Lee, Xiaojie Zhang, Anatol W. Fritsch, Marcus Jahnel, Julius Fürsch, Anastasia C. Murthy, Simon Alberti, Marc Bickle, Nicolas L. Fawzi, André Nadler, Della C. David, Udai B. Pandey, Andreas Hermann, Florian Stengel, Benjamin G. Davis, Andrew J. Baldwin, Mikhail M. Savitski, Anthony A. Hyman, Richard J. Wheeler\ Small-molecule dissolution of stress granules by redox modulation benefits ALS models\ Nature Chemical Biology (May 14, 2025) \ DOI: 10.1038/s41589-025-01893-5
- Simon Alberti
- Anthony A. Hyman
- Marcus Jahnel
Esteban Quezada, Klaus-Peter Knoch, Jovana Vasiljevic, Annika Seiler, Akshaye Pal, Abishek Gunasekaran, Carla Münster, Daniela Friedland, Eyke Schöniger, Anke Sönmez, Pascal Roch, Carolin Wegbrod, Katharina Ganß, Nicole Kipke, Simon Alberti, Rita Nano, Lorenzo Piemonti, Daniela Aust, Jürgen Weitz, Marius Distler, and Michele Solimena\ Aldolase-regulated G3BP1/2+ condensates control insulin mRNA storage in beta cells\ The EMBO Journal, 1-28 (May 12, 2025) \ DOI: 10.1038/s44318-025-00448-7
Natasha S. Lewis, Silja Zedlitz, Hannes Ausserwöger, Patrick M. McCall, Lars Hubatsch, Marco Nousch, Martine Ruer-Gruß, Carsten Hoege, Frank Jülicher, Christian R. Eckmann, Tuomas P. J. Knowles, Anthony A. Hyman\ A mechanism for MEX-5-driven disassembly of PGL-3/RNA condensates in vitro\ Proc. Natl. Acad. Sci. USA 122 (20), e2412218122 (May 12, 2025) \ DOI: 10.1073/pnas.2412218122
Yanis Baouche, Magali Le Goff, Christina Kurzthaler, Thomas Franosch\ First-passage-time statistics of active Brownian particles: A perturbative approach\ Physical Review E 111 (5), 054113 (May 12, 2025) \ DOI: 10.1103/PhysRevE.111.054113
Eugene Christo VR, Esther Charlotte Sophia Kloth, Filippo Nisini, Cordula Reuther, Stefan Diez\ Lowering Ionic Strength Improves the Sensitivity of Microtubule Gliding Assay Based Molecular Detection\ Nano Letters (May 8, 2025) \ DOI: 10.1021/acs.nanolett.5c01188
Adam Shellard, Kai Weißenbruch, Peter AE Hampshire, Namid R Stillman, Christina L Dix, Richard Thorogate, Albane Imbert, Guillaume Charras, Ricard Alert, Roberto Mayor\ Frictiotaxis underlies focal adhesion-independent durotaxis\ Nature Communications 16 (1), 3811 (Apr 23, 2025) \ DOI: 10.1038/s41467-025-58912-1
Daxiao Sun, Xueping Zhao, Tina Wiegand, Cecilie Martin-Lemaitre, Tom Borianne, Lennart Kleinschmidt, Stephan W Grill, Anthony A Hyman, Christoph Weber, Alf Honigmann\ Assembly of tight junction belts by ZO1 surface condensation and local actin polymerization\ Developmental Cell (Apr 21, 2025) \ DOI: 10.1016/j.devcel.2024.12.012
Midas Segers, Enrico Skoruppa, Helmut Schiessel, Enrico Carlon\ Statistical mechanics of multiplectoneme phases in DNA\ Physical Review E 111 (4), 044408 (Apr 17, 2025) \ DOI: 10.1103/PhysRevE.111.044408
Alba Villaronga-Luque, Ryan G Savill, Natalia López-Anguita, Adriano Bolondi, Sumit Garai, Seher Ipek Gassaloglu, Roua Rouatbi, Kathrin Schmeisser, Aayush Poddar, Lisa Bauer, Tiago Alves, Sofia Traikov, Jonathan Rodenfels, Triantafyllos Chavakis, Aydan Bulut-Karslioglu, Jesse V Veenvliet\ Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model\ Cell Stem Cell (Apr 16, 2025) \ DOI: 10.1016/j.stem.2025.03.012
Kristina S Stapornwongkul, Elisa Hahn, Patryk Poliński, Laura Salamó Palau, Krisztina Arató, LiAng Yao, Kate Williamson, Nicola Gritti, Kerim Anlas, Mireia Osuna Lopez, Kiran R Patil, Idse Heemskerk, Miki Ebisuya, Vikas Trivedi\ Glycolytic activity instructs germ layer proportions through regulation of Nodal and Wnt signaling\ Cell Stem Cell (Apr 16, 2025) \ DOI: 10.1016/j.stem.2025.03.011
Henry Carey‐Morgan, Nabarun Polley, Till Korten, Claudia Pacholski, Stefan Diez\ Microscope‐Free Analyte Detection Based on Fiber‐Optic Gliding Motility Assays\ Small 21 (22), 2411836 (Apr 16, 2025) \ DOI: 10.1002/smll.202411836
Federica Luppino, Swantje Lenz, Chi Fung Willis Chow, Agnes Toth-Petroczy\ Deep learning tools predict variants in disordered regions with lower sensitivity\ BMC genomics 26 (1), 1-16 (Apr 12, 2025) \ DOI: 10.1186/s12864-025-11534-9
Diana Zhilina, Lizbeth A Bolaños Castro, Juan Sebastian Eguiguren, Sara Zocher, Anne Karasinsky, Dimitri Widmer, Alexandre Espinós, Victor Borrell, Michael Brand, Kyoko Miura, Oliver Zierau, Maximina H Yun, Tomohisa Toda\ Dynamic expression of lamin B1 during adult neurogenesis in the vertebrate brain\ Developmental Dynamics (Apr 11, 2025) \ DOI: 10.1002/dvdy.70023
Susanne Liese, Xueping Zhao, Christoph A. Weber, Frank Jülicher\ Chemically active wetting\ Proc. Natl. Acad. Sci. USA 122, e2403083122 (Apr 9, 2025) \ DOI: 10.1073/pnas.2403083122
Maria A Kharlamova, Manish S Kushwah, Tobias J Jachowski, Sivaraman Subramaniam, Viktor Schiff, A Francis Stewart, Philipp Kukura, Erik Schäffer\ Monomers and short oligomers of human RAD52 promote single-strand annealing\ Proceedings of the National Academy of Sciences 122 (14), e2420771122 (Apr 4, 2025) \ DOI: 10.1073/pnas.2420771122
Bhavesh Valecha, Hossein Vahid, Pietro Luigi Muzzeddu, Jens-Uwe Sommer, Abhinav Sharma\ Active Transport of Cargo-Carrying and Interconnected Chiral Particles\ Soft Matter, 21, 3384-3392 (Apr 1, 2025) \ DOI: 10.1039/D5SM00170F
Yaqing Zhang, Yuan Jiang, David Kuster, Qiwei Ye, Wenhao Huang, Simon Fürbacher, Jingye Zhang, Pia Doll, Wenjun Lin, Siwei Dong, Hui Wang, Zhipeng Tang, David Ibberson, Klemens Wild, Irmgard Sinning, Anthony A Hyman, Andres Jäschke\ Single-step discovery of high-affinity RNA ligands by UltraSelex\ Nature Chemical Biology, 1-9 (Mar 31, 2025) \ DOI: 10.1038/s41589-025-01868-6
Dorna Ravamehr-Lake, Sahar Hoveyda, Michael Schlierf, Jonathon A Ditlev, Charles M Deber\ Interaction of CFTR Modulators with Mammalian Membrane Mimetics: The Role of Cholesterol\ Biochemistry (Mar 26, 2025) \ DOI: 10.1021/acs.biochem.4c00780
Michela Milani, Francesco Starinieri, Anna Fabiano, Stefano Beretta, Tiziana Plati, Cesare Canepari, Mauro Biffi, Fabio Russo, Valeria Berno, Rossana Norata, Francesca Sanvito, Ivan Merelli, Luigi Aloia, Meritxell Huch, Luigi Naldini, Alessio Cantore\ Identification of hepatocyte-primed cholangiocytes in the homeostatic liver by in vivo lentiviral gene transfer to mice and non-human primates\ Cell Reports 44 (3) (Mar 25, 2025) \ DOI: 10.1016/j.celrep.2025.115341
Cheng-Wu Li, Holger Merlitz, Jens-Uwe Sommer\ How to estimate the surface coverage of polymer grafted planar substrates and spherical nanoparticles\ Soft Matter 21 (15), 2915-2922 (Mar 24, 2025) \ DOI: 10.1039/D5SM00005J
Rachele Catalano, Y Zhao, M Pecak, T Korten, S Diez\ Barcoding Microtubules: Encoding Information onto Macromolecules by Photobleaching\ Nano Letters (Mar 21, 2025) \ DOI: 10.1021/acs.nanolett.5c00105
Amaury Perez-Tirado, Ulla Unkelbach, Tabea A Oswald, Johannes Rheinlaender, Tilman E Schäffer, Markus Mukenhirn, Alf Honigmann, Andreas Janshoff\ Differences in apical and basal mechanics regulate compliance of curved epithelia\ (Mar 19, 2025) \ DOI: 10.1016/j.xcrp.2025.102485
Chi Fung Willis Chow, Swantje Lenz, Maxim Scheremetjew, Soumyadeep Ghosh, Doris Richter, Ceciel Jegers, Alexander von Appen, Simon Alberti, Agnes Toth‐Petroczy\ SHARK‐capture identifies functional motifs in intrinsically disordered protein regions\ Protein Science 34 (4), e70091 (Mar 18, 2025) \ DOI: 10.1002/pro.70091
Ian Seim, Stephan W Grill\ Empirical methods that provide physical descriptions of dynamic cellular processes\ Biophysical journal 124 (6), 861-875 (Mar 18, 2025) \ DOI: 10.1016/j.bpj.2024.12.003
Zhouyi He, Jens-Uwe Sommer, Tyler S Harmon\ Impact of Coiled-Coil Domains on the Phase Behavior of Biomolecular Condensates\ ACS Macro Letters 14, 413-419 (Mar 17, 2025) \ DOI: 10.1021/acsmacrolett.4c00821
Melanie Krass, Meike Kolster, José Ignacio Valenzuela, Lena Moldenhauer, Marten Kagelmacher, Nicole Niesler, Alexander Weng, Marino Zerial, Gregor Nagel, Hendrik Fuchs\ Recombinant Expression of a Ready-to-Use EGF Variant Equipped With a Single Conjugation Site for Click-Chemistry\ Engineering in life sciences 25 (3), e70015 (Mar 17, 2025) \ DOI: 10.1002/elsc.70015
Christine ME Kriebisch, Olga Bantysh, Lorena Baranda Pellejero, Andrea Belluati, Eva Bertosin, Kun Dai, Maria de Roy, Hailin Fu, Nicola Galvanetto, Julianne M Gibbs, Samuel Santhosh Gomez, Gaetano Granatelli, Alessandra Griffo, Maria Guix, Cenk Onur Gurdap, Johannes Harth-Kitzerow, Ivar S Haugerud, Gregor Häfner, Pranay Jaiswal, Sadaf Javed, Ashkan Karimi, Shuzo Kato, Brigitte AK Kriebisch, Sudarshana Laha, Pao-Wan Lee, Wojciech P Lipinski, Thomas Matreux, Thomas CT Michaels, Erik Poppleton, Alexander Ruf, Annemiek D Slootbeek, Iris BA Smokers, Héctor Soria-Carrera, Alessandro Sorrenti, Michele Stasi, Alisdair Stevenson, Advait Thatte, Mai Tran, Merlijn HI van Haren, Hidde D Vuijk, Shelley FJ Wickham, Pablo Zambrano, Katarzyna P Adamala, Karen Alim, Ebbe Sloth Andersen, Claudia Bonfio, Dieter Braun, Erwin Frey, Ulrich Gerland, Wilhelm TS Huck, Frank Jülicher, Nadanai Laohakunakorn, L Mahadavan, Sijbren Otto, James Saenz, Petra Schwille, Kerstin Göpfrich, Christoph A Weber, Job Boekhoven\ A roadmap toward the synthesis of life\ Chem 11 (3) (Mar 13, 2025) \ DOI: 10.1016/j.chempr.2024.102399
Gaurav Agavekar, Yoshihiko Suzuki, Miyuki Suenaga, Miguel Pacheco-Leiva, Michael Hiller, Adrián A Pinto-Tomas, Eugene Myers, Evan P Economo\ A Haplotype-resolved Chromosome-scale Genome Assembly and Annotation for the Leafcutter Ant, Acromyrmex octospinosus\ Genome Biology and Evolution 17 (3), evaf047 (Mar 11, 2025) \ DOI: 10.1093/gbe/evaf047
Artur Czajkowski, Abhirami Udayabanu, Manthan Raj, Likhitha Ch. P. Pulibandla, Marija Tursunović, Marcus Jahnel, Ellen M. Adams\ Protein modifications and ionic strength show the difference between protein-mediated and solvent-mediated regulation of biomolecular condensation\ Front. Nanotechnol. 7:1556384 (Mar 5, 2025) \ DOI: 10.3389/fnano.2025.1556384
- Ellen Adams
- Marcus Jahnel
Ryota Takaki, Yahor Savich, Jan Brugués, Frank Jülicher\ Active Loop Extrusion Guides DNA-Protein Condensation\ Phys. Rev. Lett. 134, 128401 (Feb 26, 2025) \ DOI: 10.1103/PhysRevLett.134.128401
Martin Striegler, Stefan Diez, Benjamin M Friedrich, Veikko F Geyer\ Twist–torsion coupling in beating axonemes\ Nature Physics, 1-9 (Feb 24, 2025) \ DOI: 10.1038/s41567-025-02783-2
Matthew R Devlin, Sangwoo Kim, Otger Campàs*, Elliot W Hawkes*\ Material-like robotic collectives with spatiotemporal control of strength and shape\ Science, Vol 387, Issue 6736, pp. 880-885 (Feb 21, 2025) \ * co-corresponding authors \ DOI: doi/10.1126/science.ads7942
Georgina A Stooke-Vaughan, Sangwoo Kim, Shuo-Ting Yen, Kevin Son, Samhita P Banavar, James Giammona, David Kimelman, Otger Campàs*\ The physical roles of different posterior tissues in zebrafish axis elongation\ Nat Commun 16, 1839 (Feb 21, 2025) \ * corresponding author \ DOI: 10.1038/s41467-025-56334-7
Enza Maria Verde, Francesco Antoniani, Laura Mediani, Valentina Secco, Samuele Crotti, Maria Celidea Ferrara, Jonathan Vinet, Aleksandra Sergeeva, Xiao Yan, Carsten Hoege, Cristiana Stuani, Francesca Paron, Tzu-Ting Kao, Rohit Shrivastava, Jolanta Polanowska, Aymeric Bailly, Alessandro Rosa, Eleonora Aronica, Anand Goswami, Neil Shneider, Anthony A Hyman, Emanuele Buratti, Dimitris Xirodimas, Titus M Franzmann, Simon Alberti, Serena Carra\ SUMO2/3 conjugation of TDP-43 protects against aggregation\ Science advances 11 (8), eadq2475 (Feb 21, 2025) \ DOI: 10.1126/sciadv.adq2475
Shashank Ravichandir, Bhavesh Valecha, Pietro Luigi Muzzeddu, Jens-Uwe Sommer, Abhinav Sharma\ Transport of partially active polymers in chemical gradients\ Soft Matter 21 (10), 1835-1840 (Feb 20, 2025) \ DOI: 10.1039/D4SM01357C
Christoph Zechner, Frank Jülicher\ Concentration buffering and noise reduction in non-equilibrium phase-separating systems\ Cell Systems 16, 101168 (Feb 19, 2025) \ DOI: 10.1016/j.cels.2025.101168
Gerhard Gompper, Howard A. Stone, Christina Kurzthaler, David Saintillan, Fernado Peruani, Dmitry A. Fedosov, Thorsten Auth, Cecile Cottin-Bizonne, Christophe Ybert, Eric Clement, Thierry Darnige, Anke Lindner, Raymond E. Goldstein, Benno Liebchen, Jack Binysh, Anton Souslov, Lucio Isa, Roberto di Leonardo, Giacomo Frangipane, Hongri Gu, Bradley J. Nelson, Fridtjof Brauns, M. Cristina Marchetti, Frank Cichos, Veit-Lorenz Heuthe, Clemens Bechinger, Amos Korman, Ofer Feinerman, Andrea Cavagna, Irene Giardina, Hannah Jeckel, Knut Drescher\ The 2025 motile active matter roadmap\ J. Phys.: Condens. Matter 37 (14), 143501 (Feb 19, 2025) \ DOI: 10.1088/1361-648X/adac98
H. Harrington, H. Schenck, M. Stillman\ Algebraic aspects of homogeneous Kuramoto oscillators\ Mathematics of Computation (Feb 18, 2025) \ DOI: 10.1090/mcom/4072
Mirko Residori, Suvendu Mandal, Axel Voigt, Christina Kurzthaler\ Flow through porous media at the percolation transition\ Physical Review Research 7 (1), L012032 (Feb 17, 2025) \ DOI: 10.1103/PhysRevResearch.7.L012032
Arthur Genthon, Carl D. Modes, Frank Jülicher, Stephan W. Grill\ Nonequilibrium Transitions in a Template Copying Ensemble\ Phys. Rev. Lett. 134, 068402 (Feb 14, 2025) \ DOI: 10.1103/PhysRevLett.134.068402
Lennart Kleinschmidt, Daxiao Sun, Tom Borianne, Alf Honigmann\ Role of adhesion receptor size for patterning of the apical junctional complex (BPS2025)\ Biophysical Journal 124 (3), 262a (Feb 13, 2025) \ DOI: 10.1016/j.bpj.2024.11.1422
Irmela REA Trussina, Andreas Hartmann, Christine Desroches Altamirano, Janani Natarajan, Charlotte M Fischer, Marta Aleksejczuk, Hannes Ausserwöger, Tuomas PJ Knowles, Michael Schlierf, Titus M Franzmann, Simon Alberti\ G3BP-driven RNP granules promote inhibitory RNA-RNA interactions resolved by DDX3X to regulate mRNA translatability\ Molecular Cell 85 (3), 585-601. e11 (Feb 6, 2025) \ DOI: 10.1016/j.molcel.2024.11.039
Helen M Byrne, Heather A Harrington, Alexey Ovchinnikov, Gleb Pogudin, Hamid Rahkooy, Pedro Soto\ Algebraic identifiability of partial differential equation models\ Nonlinearity 38 (2), 025022 (Jan 30, 2025) \ DOI: 10.1088/1361-6544/ada510
Ariadna E Morales, Yue Dong, Thomas Brown, Kaushal Baid, Dimitrios-Georgios Kontopoulos, Victoria Gonzalez, Zixia Huang, Alexis-Walid Ahmed, Arkadeb Bhuinya, Leon Hilgers, Sylke Winkler, Graham Hughes, Xiaomeng Li, Ping Lu, Yixin Yang, Bogdan M Kirilenko, Paolo Devanna, Tanya M Lama, Yomiran Nissan, Martin Pippel, Liliana M Dávalos, Sonja C Vernes, Sebastien J Puechmaille, Stephen J Rossiter, Yossi Yovel, Joseph B Prescott, Andreas Kurth, David A Ray, Burton K Lim, Eugene Myers, Emma C Teeling, Arinjay Banerjee, Aaron T Irving, Michael Hiller\ Bat genomes illuminate adaptations to viral tolerance and disease resistance\ Nature, 1-10 7 2025 (Jan 29, 2025) \ DOI: 10.1038/s41586-024-08471-0
Temitope Opeyemi Oriowo, Ioannis Chrysostomakis, Sebastian Martin, Sandra Kukowka, Thomas Brown, Sylke Winkler, Eugene W Myers, Astrid Böhne, Madlen Stange\ A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity\ GigaScience 14, giae116 (Jan 29, 2025) \ DOI: 10.1093/gigascience/giae116
Thomas Brown, Ketan Mishra, Ahmed Elewa, Svetlana Iarovenko, Elaiyaraja Subramanian, Alberto Joven Araus, Andreas Petzold, Bastian Fromm, Marc R Friedländer, Lennart Rikk, Miyuki Suzuki, T Suzuki Ken-ichi, Toshinori Hayashi, Atsushi Toyoda, Catarina R Oliveira, Ekaterina Osipova, Nicholas D Leigh, Maximina H Yun, András Simon\ Chromosome-scale genome assembly reveals how repeat elements shape non-coding RNA landscapes active during newt limb regeneration\ Cell Genomics (Jan 27, 2025) \ DOI: 10.1016/j.xgen.2025.100761
Aditya Chhatre, Ludek Stepanek, Adrian Pascal Nievergelt, Gonzalo Alvarez Viar, Stefan Diez, Gaia Pigino\ Tubulin tyrosination/detyrosination regulate the affinity and sorting of intraflagellar transport trains on axonemal microtubule doublets\ Nature Communications 16 (1), 1055 (Jan 26, 2025) \ DOI: 10.1038/s41467-025-56098-0
Endao Han, Chenyi Fei, Ricard Alert, Katherine Copenhagen, Matthias D Koch, Ned S Wingreen, Joshua W Shaevitz\ Local polar order controls mechanical stress and triggers layer formation in Myxococcus xanthus colonies\ Nature Communications 16 (1), 952 (Jan 22, 2025) \ DOI: 10.1038/s41467-024-55806-6
Mikhail V Tsurkan, Juliane Bessert, Rabea Selzer, Sarah D Tsurkan, Dagmar Pette, Manfred F Maitz, Petra B Welzel, Carsten Werner\ FXa‐Responsive Hydrogels to Craft Corneal Endothelial Lamellae\ Advanced Healthcare Materials, 2402593 (Jan 22, 2025) \ DOI: 10.1002/adhm.202402593
Rahul G Ramachandran, Ricard Alert, Pierre A Haas\ Buckling by disordered growth\ Physical Review E 110 (5), 054405 (Jan 20, 2025) \ DOI: 10.1103/PhysRevE.110.054405
Mitsuhiro Matsuda, Jorge Lázaro, Miki Ebisuya\ Metabolic activities are selective modulators for individual segmentation clock processes\ Nature Communications volume 16, Article number: 845 (Jan 20, 2025) \ DOI: 10.1038/s41467-025-56120-5
Fernando Ferreira, Sofia Moreira, Min Zhao, Elias H. Barriga\ Stretch-induced endogenous electric fields drive directed collective cell migration in vivo\ Nature Materials (Jan 17, 2025) \ DOI: 10.1038/s41563-024-02060-2
Akanksha Bhatt, Valentin Ruffine, Uwe Töpfer, Jinhee Ryu, Elisabeth Fischer-Friedrich, Christian Dahmann\ The WIRS motifs in Fat2 are required for Drosophila egg chamber rotation but not for elongation\ Development, 152 (2) (Jan 17, 2025) \ DOI: 10.1242/dev.204201
Oliver Gafvert, Peter Grindrod, Heather A Harrington, Catherine F Higham, Desmond J Higham, Ka Man Yim\ On the hidden layer-to-layer topology of the representations of reality realised within neural networks\ Engineering Computations (Jan 17, 2025) \ DOI: 10.1108/EC-06-2024-0508
Alex S Holehouse, Simon Alberti\ Molecular determinants of condensate composition\ Molecular Cell 85 (2), 290-308 (online: Jan 16, 2025) \ DOI: 10.1016/j.molcel.2024.12.021
Enrico Skoruppa, Helmut Schiessel\ Systematic coarse-graining of sequence-dependent structure and elasticity of double-stranded DNA\ Physical Review Research 7 (1), 013044 (Jan 14, 2025) \ DOI: 10.1103/PhysRevResearch.7.013044
Yitong Xu, Anna Chao, Melissa Rinaldin, Alison Kickuth, Jan Brugués, and Stefano Di Talia\ The cell cycle oscillator and spindle length set the speed of chromosome separation in Drosophila embryos\ Current Biology (online: Jan 2025) \ DOI: 10.1016/j.cub.2024.11.046
Maik Punke, Marco Salvalaglio, Axel Voigt, Steven M Wise\ A non-isothermal phase-field crystal model with lattice expansion: Analysis and benchmarks\ Modelling and Simulation in Materials Science and Engineering (online: Jan 8, 2025) \ DOI: 10.1088/1361-651X/ada784
César Augusto Quintana-Cataño, Ann Mukhortava, Mordjane A. Boukhet, Andreas Hartmann, Karl-Ludwig Schumann, Michael Schlierf\ Magnetic tweezers to capture the fast-folding λ6-85 in slow motion\ Commun Phys 8, 13 (Jan 7, 2025) \ DOI: 10.1038/s42005-024-01916-y
Nadia Bihari Padhan, Axel Voigt\ Suppression of hyperuniformity in hydrodynamic scalar active field theories\ Journal of Physics: Condensed Matter (Jan 6, 2025) \ DOI: 10.1088/1361-648X/ada243
Marko Barovic, Joke Johanna Hahn, Annett Heinrich, Trishla Adhikari, Peter Schwarz, Peter Mirtschink, Alexander Funk, Stefan Kabisch, Andreas FH Pfeiffer, Matthias Blüher, Jochen Seissler, Norbert Stefan, Robert Wagner, Andreas Fritsche, Reiner Jumpertz von Schwartzenberg, Sarantis Chlamydas, Hani Harb, Christos S Mantzoros, Triantafyllos Chavakis, Annette Schürmann, Andreas L Birkenfeld, Michael Roden, Michele Solimena, Stefan R Bornstein, Nikolaos Perakakis\ Proteomic and Metabolomic Signatures in Prediabetes Progressing to Diabetes or Reversing to Normoglycemia Within 1 Year\ Diabetes Care, dc241412 (Jan 2, 2025) \ DOI: 10.2337/dc24-1412
2024
211 publication(s) listed
Daxiao Sun, Xueping Zhao, Tina Wiegand, Cecilie Martin-Lemaitre, Tom Borianne, Lennart Kleinschmidt, Stephan W Grill, Anthony A Hyman, Christoph Weber, Alf Honigmann\ Assembly of tight junction belts by ZO1 surface condensation and local actin polymerization\ Developmental Cell (online: Dec 31, 2024) \ DOI: 10.1016/j.devcel.2024.12.012
Anne Grapin-Botton, Jonathan YH Loh\ Editorial overview: Regaining architecture and cell cross-talk upon regeneration\ Current opinion in genetics & development 91, 102302 (online: Dec 28, 2024) \ DOI: 10.1016/j.gde.2024.102302
Irmela R.E.A. Trussina, Andreas Hartmann, Christine Desroches Altamirano, Janani Natarajan, Charlotte M. Fischer, Marta Aleksejczuk, Hannes Ausserwöger, Tuomas P.J. Knowles, Michael Schlierf, Titus M. Franzmann, Simon Alberti\ G3BP-driven RNP granules promote inhibitory RNA-RNA interactions resolved by DDX3X to regulate mRNA translatability\ Molecular Cell (online: Dec 26, 2024) \ DOI: 10.1016/j.molcel.2024.11.039
Yohan Kim, Minseok Kang, Michael Girma Mamo, Michael Adisasmita, Meritxell Huch, Dongho Choi\ Liver organoids: Current advances and future applications for hepatology\ Clinical and Molecular Hepatology (Dec 26, 2024) \ DOI: 10.3350/cmh.2024.1040
Ali Al-Fatlawi, Md Ballal Hossen, Stella de Paula Lopes, A Francis Stewart, Michael Schroeder\ A structural phylogenetic tree of Rad52 and its annealase superfamily\ Computational and Structural Biotechnology Journal (Dec 24, 2024) \ DOI: 10.1016/j.csbj.2024.12.012
Joan Antoni Soler, Anupam Singh, Marino Zerial, Shashi Thutupalli\ Motor Function of the Two-Component EEA1-Rab5 Revealed by dcFCCS\ Molecular Motors: Methods and Protocols, 87-115 (online: Dec 21, 2024) \ DOI: 10.1007/978-1-0716-4280-1_4
Kinga Zolnacz, Ronja Stephan, Jakob Dremel, Katharina Hausmann, Matthias Ließmann, Michael Steinke, Juergen Czarske, Robert Kuschmierz\ Multicore fiber with thermally expanded cores for increased collection efficiency in endoscopic imaging\ Light: Advanced Manufacturing 5 (4), 580-587 (Dec 19, 2024) \ DOI: 10.37188/lam.2024.049
Burton K Lim, Martin Pippel, Thomas Brown, Sylke Winkler, Myrtani Pieri, Meike Mai, Eugene W Myers, Emma C Teeling, Sonja C Vernes, Bat1K consortium\ The genome sequence of the greater two-lined sac-winged bat Saccopteryx bilineata, Temminck, 1838 (Emballonuridae, Emballonurinae)\ Wellcome Open Research 9, 726 (Dec 18, 2024) \ DOI: 10.12688/wellcomeopenres.22972.1
Dominik Sturm, Suryanarayana Maddu, Ivo F Sbalzarini\ Learning locally dominant force balances in active particle systems\ Proceedings A 480 (2304), 20230532 (Dec 18, 2024) \ DOI: 10.1098/rspa.2023.0532
Tina Subic, Ivo F Sbalzarini\ Loss of bimolecular reactions in reaction–diffusion master equations is consistent with diffusion limited reaction kinetics in the mean field limit\ The Journal of Chemical Physics 161 (23) (Dec 16, 2024) \ DOI: 10.1063/5.0227527
Ekaterina Vorobevskaia, Céline Loot, Didier Mazel, Michael Schlierf\ The recombination efficiency of the bacterial integron depends on the mechanical stability of the synaptic complex\ Sci. Adv. 10(50):eadp8756 (Dec 13, 2024) \ DOI: 10.1126/sciadv.adp8756
Mansi Gupta, Thomas Kurth, Fabian Heinemann, Petra Schwille, Sebastian Keil, Franziska Knopf, and Michael Brand\ Fine-tuning of Fgf8 morphogen gradient by heparan sulfate proteoglycans in the extracellular matrix\ Biophysical Journal (Dec 11, 2024) \ DOI: 10.1016/j.bpj.2024.12.009
Anna Hadarovich, Hari Raj Singh, Soumyadeep Ghosh, Maxim Scheremetjew, Nadia Rostam, Anthony A Hyman, Agnes Toth-Petroczy\ PICNIC accurately predicts condensate-forming proteins regardless of their structural disorder across organisms\ Nature Communications 15 (1), 1-16 (Dec 11, 2024) \ DOI: 10.1038/s41467-024-55089-x
Jasmin Elurbide, Leticia Colyn, Maria U Latasa, Iker Uriarte, Stefano Mariani, Amaya Lopez-Pascual, Emiliana Valbuena, Borja Castello-Uribe, Robert Arnes-Benito, Elena Adan-Villaescusa, Luz A Martinez-Perez, Mikel Azkargorta, Felix Elortza, Hanghang Wu, Marcin Krawczyk, Kai Markus Schneider, Bruno Sangro, Luca Aldrighetti, Francesca Ratti, Andrea Casadei Gardini, Jose JG Marin, Irene Amat, Jesus M Urman, Maria Arechederra, Maria Luz Martinez-Chantar, Christian Trautwein, Meritxell Huch, Francisco Javier Cubero, Carmen Berasain, Maite G Fernandez-Barrena, Matias A Avila\ Identification of PRMT5 as a therapeutic target in cholangiocarcinoma\ Gut 74 (1), 116-127 (Dec 10, 2024) \ DOI: 10.1136/gutjnl-2024-333632
Ian Seim, Stephan W Grill\ Empirical methods that provide physical descriptions of dynamic cellular processes\ Biophysical Journal (Dec 5, 2024) \ DOI: 10.1016/j.bpj.2024.12.003
Tina Wiegand, Jinghui Liu, Lutz Vogeley, Isabel LuValle-Burke, Jan Geisler, Anatol W Fritsch, Anthony A Hyman, Stephan W Grill\ Actin polymerization counteracts prewetting of N-WASP on supported lipid bilayers\ PNAS 121 (50), e2407497121 (Dec 4, 2024) \ DOI: 10.1073/pnas.2407497121
Wolfgang Büschel, Katja Krug, Marc Satkowski, Stefan Gumhold, Raimund Dachselt\ A Research Platform for Studying Mixed-Presence Collaboration\ 2024 IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct) (online: Dec 2, 2024) \ DOI: 10.1109/ISMAR-Adjunct64951.2024.00058
Timon Beck, Lize-Mari van der Linden, Wade M Borcherds, Kyoohyun Kim, Raimund Schlüßler, Paul Müller, Titus M Franzmann, Conrad Möckel, Ruchi Goswami, Mark Leaver, Tanja Mittag, Simon Alberti, Jochen Guck\ Optical characterization of molecular interaction strength in protein condensates\ Molecular Biology of the Cell 35 (12), ar154 (online: Dec 2, 2024) \ DOI: 10.1091/mbc.E24-03-0128
Chi Fung Willis Chow, Agnes Toth-Petroczy\ The evolution and exploration of intrinsically disordered and phase-separated protein states\ The Three Functional States of Proteins, 353-379 (Nov 22, 2024) \ DOI: 10.1016/B978-0-443-21809-5.00014-4
Stefan Rothe, Fabio A Barbosa, Jürgen W Czarske, Filipe M Ferreira\ Unlocking mode programming with multi-plane light conversion using computer-generated hologram optimisation\ Journal of Physics: Photonics 7 (1), 015002 (Nov 22, 2024) \ DOI: 10.1088/2515-7647/ad9209
Maarten P Bebelman, Lenka Belicova, Elzbieta Gralinska, Tobias Jumel, Aparajita Lahree, Sarah Sommer, Andrej Shevchenko, Timofei Zatsepin, Yannis Kalaidzidis, Martin Vingron, Marino Zerial\ Hepatocyte differentiation requires anisotropic expansion of bile canaliculi\ Development 151 (22) (Nov 21, 2024) \ DOI: 10.1242/dev.202777
D Janka Bauer, Arash Nikoubashman\ The conformations of protein chains at the interface of biomolecular condensates\ Nature Communications 15 (1), 9975 (Nov 19, 2024) \ DOI: 10.1038/s41467-024-53575-w
Luis David García Puente, Elizabeth Gross, Heather A Harrington, Matthew Johnston, Nicolette Meshkat, Mercedes Pérez Millán, Anne Shiu\ Absolute concentration robustness: Algebra and geometry\ Journal of Symbolic Computation 128, 102398 (Nov 19, 2024) \ DOI: 10.1016/j.jsc.2024.102398
A Sophie Brumm, Afshan McCarthy, Claudia Gerri, Todd Fallesen, Laura Woods, Riley McMahon, Athanasios Papathanasiou, Kay Elder, Phil Snell, Leila Christie, Patricia Garcia, Valerie Shaikly, Mohamed Taranissi, Paul Serhal, Rabi A Odia, Mina Vasilic, Anna Osnato, Peter J Rugg-Gunn, Ludovic Vallier, Caroline S Hill, Kathy K Niakan\ Initiation and maintenance of the pluripotent epiblast in pre-implantation human development is independent of NODAL signaling\ Developmental Cell (Nov 18, 2024) \ DOI: 10.1016/j.devcel.2024.10.020
Mehrez Gammoudi, Isabel L Dittmann, Johannes Girstmair, Pavel Tomancak, Bernhard Egger, Verónica N Bulnes\ A new Phrikoceros species (Polycladida: Cotylea) from Ghar El Melh lagoon (Tunisia) with some remarks on the morphology of the genera Phrikoceros and Thytthosoceros\ Biologia, 1-15 (Nov 18, 2024) \ DOI: 10.1007/s11756-024-01818-y
Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Yang-Joon Kim, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, Bin Yang, Xiang Zhao, Yang Liu, Angela M Detweiler, Sheryl Paul, Ilan Theodoro, Honey Mekonen, Chris Charlton, Tiger Lao, Rachel Banks, Sheng Xiao, Adrian Jacobo, Keir Balla, Kyle Awayan, Samuel D’Souza, Robert Haase, Alexandre Dizeux, Olivier Pourquie, Rafael Gómez-Sjöberg, Greg Huber, Mattia Serra, Norma Neff, Angela Oliveira Pisco, Loïc A Royer\ A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors\ Cell 187 (23) (Nov 14, 2024) \ DOI: 10.1016/j.cell.2024.09.047
- (Alumni Group) Robert Haase
Wentao Zheng, Yuxuan Wang, Jie Cui, Guangyao Guo, Yufeng Li, Jin Hou, Qiang Tu, Yulong Yin, Francis Stewart, Youming Zhang, Xiaoying Bian, Xue Wang\ ReaL-MGE is a tool for enhanced multiplex genome engineering and application to malonyl-CoA anabolism\ Nature Communications 15 (1), 9790 (Nov 12, 2024) \ DOI: 10.1038/s41467-024-54191-4
Jiahui Wang, Dinesh Sundaravadivelu Devarajan, Keerthivasan Muthukumar, Young C. Kim, Arash Nikoubashman, Jeetain Mittal\ Sequence-dependent conformational transitions of disordered proteins\ Chemical Science (Nov 12, 2024) \ DOI: 10.1039/D4SC05004E
K. Yanín Guerra Santillán, Caroline Jantzen, Christian Dahmann, Elisabeth Fischer-Friedrich\ Epithelial folding through local degradation of an elastic basement membrane plate\ Advanced Physics Research, 2400062 (Nov 11, 2024) \ DOI: 10.1002/apxr.202400062
M Sreepadmanabh, Meenakshi Ganesh, Pratibha Sanjenbam, Christina Kurzthaler, Deepa Agashe & Tapomoy Bhattacharjee\ Cell shape affects bacterial colony growth under physical confinement\ Nat Commun 15, 9561 (Nov 8, 2024) \ DOI: 10.1038/s41467-024-53989-6
Johannes Pahlke, Ivo F Sbalzarini\ Proven Distributed Memory Parallelization of Particle Methods\ ACM Transactions on Parallel Computing 11 (4), 1-45 (Nov 8, 2024) \ DOI: 10.1145/3696189
Prannoy Seth, Jens Friedrichs, Yanuar Dwi Putra Limasale, Nicole Fertala, Uwe Freudenberg, Yixin Zhang, Ayala Lampel, Carsten Werner\ Interpenetrating Polymer Network Hydrogels with Tunable Viscoelasticity and Proteolytic Cleavability to Direct Stem Cells In Vitro\ Advanced Healthcare Materials, 2402656 (Nov 6, 2024) \ DOI: 10.1002/adhm.202402656
Abhimanyu Sharma, Benjamin M Friedrich, Veikko F Geyer\ Active fluctuations of axoneme oscillations scale with number of dynein motors\ PNAS 121 (46) e2406244121 (Nov 5, 2024) \ DOI: 10.1073/pnas.2406244121
Sudarshana Laha, Jonathan Bauermann, Frank Jülicher, Thomas C. T. Michaels, Christoph A. Weber\ Chemical reactions regulated by phase-separated condensates\ Phys. Rev. Research 6, 043092 (Nov 4, 2024) \ DOI: 10.1103/PhysRevResearch.6.043092
Nadiia Davydiuk, Vaidehi Londhe, Manfred F Maitz, Carsten Werner, Andreas Fery, Quinn A Besford\ The interaction of glycogen nanoparticles with human blood\ Nanoscale 17 (1), 252-260 (Nov 4, 2024) \ DOI: 10.1039/D4NR03034F
Clemens Bilsing, Uwe Janoske, Jürgen Czarske, Lars Büttner, Sebastian Burgmann\ 3D-3C measurements of flow reversal in small sessile drops in shear flow\ International Journal of Multiphase Flow 182, 105017 (Nov 3, 2024) \ DOI: 10.1016/j.ijmultiphaseflow.2024.105017
Juliane Hammer, Paul Röppenack, Sarah Yousuf, Anja Machate, Marika Fischer, Stefan Hans, and Michael Brand\ Blind But Alive – Congenital Loss of atoh7 Disrupts the Visual System of Adult Zebrafish\ Investigative Ophthalmology & Visual Science (Nov 1, 2024) \ DOI: 10.1167/iovs.65.13.42
Mariana Maia-Gil, Maria Gorjão, Roman Belousov, Jaime A. Espina, João Coelho, Juliette Gouhier, Ana P. Ramos, Elias H. Barriga, Anna Erzberger, and Caren Norden\ Nuclear deformability facilitates apical nuclear migration in the developing zebrafish retina\ Current Biology (Oct 30, 2024) \ DOI: 10.1016/j.cub.2024.10.015
Georg Börner, Malte Schröder, Moritz Thümler, Marc Timme\ Perturbation-response dynamics of coupled nonlinear systems\ Chaos: An Interdisciplinary Journal of Nonlinear Science 34 (10) (Oct 29, 2024) \ DOI: 10.1063/5.0223294
Christine Desroches Altamirano, Simon Alberti\ Surviving the heat: the role of macromolecular assemblies in promoting cellular shutdown\ Trends in Biochemical Sciences (online: Oct 28, 2024) \ DOI: 10.1016/j.tibs.2024.09.008
Yonit Maroudas-Sacks, Liora Garion, S Suganthan, Marko Popović, Kinneret Keren\ Confinement Modulates Axial Patterning in Regenerating Hydra\ PRX Life 2 (4), 043007 (Oct 28, 2024) \ DOI: 10.1103/PRXLife.2.043007
Julia Duque, Alessandra Bonfanti, Jonathan Fouchard, Lucia Baldauf, Sara R. Azenha, Emma Ferber, Andrew Harris, Elias H. Barriga, Alexandre J. Kabla, Guillaume Charras\ Rupture strength of living cell monolayers\ Nature Materials volume 23, pages 1563–1574 (Oct 28, 2024) \ DOI: 10.1038/s41563-024-02027-3
Whendy Contreras, Jody Groenendyk, Marc Gentzel, Pascal Y Schönberg, Frank Buchholz, Marek Michalak, Bernd Schröder, Torben Mentrup\ Selective regulation of aspartyl intramembrane protease activity by calnexin\ Cellular and Molecular Life Sciences 81 (1), 441 (Oct 26, 2024) \ DOI: 10.1007/s00018-024-05478-8
Dominica Cao, Sumit Garai, James DiFrisco, Jesse V Veenvliet\ The logic of monsters: development and morphological diversity in stem-cell-based embryo models\ Interface Focus 14 (5) (Oct 25, 2024) \ DOI: 10.1098/rsfs.2024.0023
Sebastian Kühn, Valentina Magno, Ralf Zimmermann, Yanuar Dwi Putra Limasale, Passant Atallah, Aukha Stoppa, Max J Männel, Julian Thiele, Jens Friedrichs, Uwe Freudenberg, Carsten Werner\ Microgels With Electrostatically Controlled Molecular Affinity to Direct Morphogenesis\ Advanced Materials, 2409731 (Oct 24, 2024) \ DOI: 10.1002/adma.202409731
Andreas Müller, Nikolai Klena, Song Pang, Leticia Elizabeth Galicia Garcia, Oleksandra Topcheva, Solange Aurrecoechea Duran, Davud Sulaymankhil, Monika Seliskar, Hassan Mziaut, Eyke Schöniger, Daniela Friedland, Nicole Kipke, Susanne Kretschmar, Carla Münster, Jürgen Weitz, Marius Distler, Thomas Kurth, Deborah Schmidt, Harald F Hess, C Shan Xu, Gaia Pigino, Michele Solimena\ Structure, interaction and nervous connectivity of beta cell primary cilia\ Nature Communications 15 (1), 9168 (Oct 24, 2024) \ DOI: 10.1038/s41467-024-53348-5
Xueping Zhao, Susanne Liese, Alf Honigmann, Frank Jülicher, Christoph A Weber\ Theory of wetting dynamics with surface binding\ New J. Phys. 26 103025 (Oct 23, 2024) \ DOI: 10.1088/1367-2630/ad80bb
Benjamin R Sabari, Anthony A Hyman, Denes Hnisz\ Functional specificity in biomolecular condensates revealed by genetic complementation\ Nature Reviews Genetics, 1-12 (Oct 21, 2024) \ DOI: 10.1038/s41576-024-00780-4
Francois El-Daher, Stephen J Enos, Louisa K Drake, Daniel Wehner, Markus Westphal, Nicola J Porter, Catherina G Becker, Thomas Becker\ Microglia are essential for tissue contraction in wound closure after brain injury in zebrafish larvae\ Life Science Alliance 8 (1) e202403052; (online: Oct 17, 2024) \ DOI: 10.26508/lsa.202403052
Maik Porrmann, Axel Voigt\ Shape evolution of fluid deformable surfaces under active geometric forces\ Physics of Fluids 36, 102120 (Oct 16, 2024) \ DOI: 10.1063/5.0233955
Romy Kronstein-Wiedemann, Jessica Thiel, Duran Sürün, Madeleine Teichert, Stephan R Künzel, Stefan Zimmermann, Lisa Wagenführ, Frank Buchholz, Torsten Tonn\ Characterization of immortalized bone marrow erythroid progenitor adult (imBMEP-A)—The first inducible immortalized red blood cell progenitor cell line derived from bone marrow CD71-positive cells\ Cytotherapy 26 (11), 1362-1373 (Oct 11, 2024) \ DOI: 10.1016/j.jcyt.2024.06.009
Tianfang Lin, Zhongyuan Yu, Matthew McGinity, Stefan Gumhold\ An immersive labeling method for large point clouds\ Computers & Graphics 124, 104101 (Oct 11, 2024) \ DOI: 10.1016/j.cag.2024.104101
Alexandra Schauer, Jesse V. Veenvliet\ Retinoid-enhanced human gastruloids\ Nat Cell Biol 26, 1634–1636 (Oct 10, 2024) \ DOI: 10.1038/s41556-024-01517-5
Leila Haj Abdullah Alieh, Beatriz Cardoso de Toledo, Anna Hadarovich, Agnes Toth-Petroczy, Federico Calegari\ Characterization of alternative splicing during mammalian brain development reveals the extent of isoform diversity and potential effects on protein structural changes\ Biology Open 13 (10) (Oct 10, 2024) \ DOI: 10.1242/bio.061721
Yanuar Dwi Putra Limasale, Maximilian Fusenig, Marten Samulowitz, Passant Atallah, Jana Sievers, Nicholas Dennison, Uwe Freudenberg, Jens Friedrichs, Carsten Werner\ Glycosaminoglycan Concentration and Sulfation Patterns of Biohybrid Polymer Matrices Direct Microvascular Network Formation and Stability\ Advanced Functional Materials 34 (49), 2411475 (Oct 10, 2024) \ DOI: 10.1002/adfm.202411475
U Sandy Tretbar, Joel G Rurik, Even H Rustad, Duran Sürün, Ulrike Köhl, Johanna Olweus, Frank Buchholz, Zoltán Ivics, Stephan Fricke, Ulrich Blache\ Non-viral vectors for chimeric antigen receptor immunotherapy\ Nature Reviews Methods Primers 4 (1), 74 (Oct 10, 2024) \ DOI: 10.1038/s43586-024-00348-w
Chi Fung Willis Chow, Soumyadeep Ghosh, Anna Hadarovich, Agnes Toth-Petroczy\ SHARK enables sensitive detection of evolutionary homologs and functional analogs in unalignable and disordered sequences\ Proc Natl Acad Sci USA 121(42):e2401622121 (Oct 9, 2024) \ DOI: 10.1073/pnas.2401622121
Shanshan Xu, Maria E Gierisch, Enrica Barchi, Ina Poser, Simon Alberti, Florian A Salomons, Nico P Dantuma\ Chemical inhibition of the integrated stress response impairs the ubiquitin-proteasome system\ Communications Biology 7 (1), 1282 (Oct 8, 2024) \ DOI: 10.1038/s42003-024-06974-0
Elias H. Barriga\ Following the electric current\ Nat Rev Mol Cell Biol 25, 844 (Oct 4, 2024) \ DOI: 10.1038/s41580-024-00781-5
Takashi Nishio, Helmut Schiessel\ Coalescence of liquid or gel-like DNA-encapsulating microdroplets\ J. Chem. Phys. 161, 134904 (Oct 2, 2024) \ DOI: 10.1063/5.0223951
Sami Tasmany, Daniel Kaiser, Jakob Woisetschläger, Johannes Gürtler, Robert Kuschmierz, Jürgen Czarske\ Heterodyne background-oriented schlieren for the measurement of thermoacoustic oscillations in flames\ Experiments in Fluids 65 (10), 151 (Oct 1, 2024) \ DOI: 10.1007/s00348-024-03890-1
Tomáš Takáč, Lenka Kuběnová, Olga Šamajová, Petr Dvořák, Jan Řehák, Jan Haberland, Sebastian T Bundschuh, Tibor Pechan, Pavel Tomančák, Miroslav Ovečka, Jozef Šamaj\ Actin cytoskeleton and plasma membrane aquaporins are involved in different drought response of Arabidopsis rhd2 and der1 root hair mutants\ Plant Physiology and Biochemistry 216, 109137 (Oct 1, 2024) \ DOI: 10.1016/j.plaphy.2024.109137
Wojciech Reise, Ximena Fernández, Maria Dominguez, Heather A Harrington, Mariano Beguerisse-Díaz\ Topological Fingerprints for Audio Identification\ SIAM Journal on Mathematics of Data Science 6 (3), 815-841 (Sep 30, 2024) \ DOI: 10.1137/23M1605090
Heidi L. van de Wouw, Shuo-Ting Yen, Manon Valet, Joseph A. Garcia, Carlos O. Gomez, Antoine Vian, Yucen Liu, Jennifer Pollock, Petr Pospíšil, Otger Campàs*, Ellen M. Sletten*\ Non-Ionic Fluorosurfactants for Droplet-Based in vivo Applications\ Angew. Chem. Int. Ed., e202404956 (Sep 27, 2024) \ * co-corresponding authors \ DOI: 10.1002/anie.202404956
Boyi Wang, Frank Jülicher, Patrick Pietzonka\ Condensate formation in a chiral lattice gas\ New J. Phys. 26 093031 (Sep 24, 2024) \ DOI: 10.1088/1367-2630/ad7490
Lukas Haugk, Holger Merlitz, Jens-Uwe Sommer\ Single Chain Polymer Condensates under External Force\ Macromolecules Vol 57/Issue 19 (Sep 24, 2024) \ DOI: 10.1021/acs.macromol.4c01060
Metin G. Davutoglu, Veikko F. Geyer, Lukas Niese, Johannes R. Soltwedel, Marcelo L. Zoccoler, Valeria Sabatino, Robert Haase, Nils Kröger, Stefan Diez, Nicole Poulsen\ Gliding motility of the diatom Craspedostauros australis coincides with the intracellular movement of raphid-specific myosins\ Commun Biol 7, 1187 (Sep 23, 2024) \ DOI: 10.1038/s42003-024-06889-w
- Stefan Diez
- Nils Kröger
- (Alumni Group) Robert Haase
Cheng-Wu Li, Holger Merlitz, Jens-Uwe Sommer\ Comparison of different thermostat settings in the implicit solvent approach for nanoparticles through brush-decorated nanopores\ Physical Review E 110 (3), 034503 (Sep 23, 2024) \ DOI: 10.1103/PhysRevE.110.034503
Christine Desroches Altamirano, Simon Alberti\ Protocol to reconstitute translationally arrested heat shock mRNPs and condensates in vitro\ STAR protocols 5 (3), 103275 (Sep 20, 2024) \ DOI: 10.1016/j.xpro.2024.103275
Rahul M Sarate, Joel Hochstetter, Manon Valet, Adrien Hallou, Yura Song, Nordin Bansaccal, Melanie Ligare, Mariaceleste Aragona, Dan Engelman, Anaïs Bauduin, Otger Campàs*, Benjamin D Simons*, Cedric Blanpain*\ Dynamic regulation of tissue fluidity controls skin repair during wound healing\ Cell 187(19):5298–5315.e19 (Sep 19, 2024) \ * co-corresponding authors \ DOI: 10.1016/j.cell.2024.07.031
Ann M Mc Cartney, Giulio Formenti, Alice Mouton, Diego De Panis, Luísa S Marins, Henrique G Leitão, Genevieve Diedericks, Joseph Kirangwa, Marco Morselli, Judit Salces-Ortiz, Nuria Escudero, Alessio Iannucci, Chiara Natali, Hannes Svardal, Rosa Fernández, Tim De Pooter, Geert Joris, Mojca Strazisar, Jonathan MD Wood, Katie E Herron, Ole Seehausen, Phillip C Watts, Felix Shaw, Robert P Davey, Alice Minotto, José M Fernández, Astrid Böhne, Carla Alegria, Tyler Alioto, Paulo C Alves, Isabel R Amorim, Jean-Marc Aury, Niclas Backstrom, Petr Baldrian, Laima Baltrunaite, Endre Barta, Bertrand BedHom, Caroline Belser, Johannes Bergsten, Laurie Bertrand, Helena Bilandija, Mahesh Binzer-Panchal, Iliana Bista, Mark Blaxter, Paulo AV Borges, Guilherme Borges Dias, Mirte Bosse, Tom Brown, Rémy Bruggmann, Elena Buena-Atienza, Josephine Burgin, Elena Buzan, Alessia Cariani, Nicolas Casadei, Matteo Chiara, Sergio Chozas, Fedor Čiampor Jr, Angelica Crottini, Corinne Cruaud, Fernando Cruz, Love Dalen, Alessio De Biase, Javier Del Campo, Teo Delic, Alice B Dennis, Martijn FL Derks, Maria Angela Diroma, Mihajla Djan, Simone Duprat, Klara Eleftheriadi, Philine GD Feulner, Jean-François Flot, Giobbe Forni, Bruno Fosso, Pascal Fournier, Christine Fournier-Chambrillon, Toni Gabaldon, Shilpa Garg, Carmela Gissi, Luca Giupponi, Jessica Gomez-Garrido, Josefa González, Miguel L Grilo, Björn Grüning, Thomas Guerin, Nadege Guiglielmoni, Marta Gut, Marcel P Haesler, Christoph Hahn, Balint Halpern, Peter W Harrison, Julia Heintz, Maris Hindrikson, Jacob Höglund, Kerstin Howe, Graham M Hughes, Benjamin Istace, Mark J Cock, Franc Janžekovič, Zophonias O Jonsson, Sagane Joye-Dind, Janne J Koskimäki, Boris Krystufek, Justyna Kubacka, Heiner Kuhl, Szilvia Kusza, Karine Labadie, Meri Lähteenaro, Henrik Lantz, Anton Lavrinienko, Lucas Leclère, Ricardo Jorge Lopes, Ole Madsen, Ghislaine Magdelenat, Giulia Magoga, Tereza Manousaki, Tapio Mappes, Joao Pedro Marques, Gemma I Martinez Redondo, Florian Maumus, Shane A McCarthy, Hendrik-Jan Megens, Jose Melo-Ferreira, Sofia L Mendes, Matteo Montagna, Joao Moreno, Mai-Britt Mosbech, Mónica Moura, Zuzana Musilova, Eugene Myers, Will J Nash, Alexander Nater, Pamela Nicholson, Manuel Niell, Reindert Nijland, Benjamin Noel, Karin Noren, Pedro H Oliveira, Remi-Andre Olsen, Lino Ometto, Rebekah A Oomen, Stephan Ossowski, Vaidas Palinauskas, Snaebjorn Palsson, Jerome P Panibe, Joana Pauperio, Martina Pavlek, Emilie Payen, Julia Pawlowska, Jaume Pellicer\ The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics\ npj Biodiversity 3 (1), 28 (Sep 17, 2024) \ DOI: 10.1038/s44185-024-00054-6
João P Marques, Paulo C Alves, Isabel R Amorim, Ricardo J Lopes, Monica Moura, Eugene Myers, Manuela Sim-Sim, Carla Sousa-Santos, M Judite Alves, Paulo AV Borges, Thomas Brown, Miguel Carneiro, Carlos Carrapato, Luís MP Ceríaco, Claúdio Ciofi, Luís P da Silva, Genevieve Diedericks, Maria Angela Diroma, Liliana Farelo, Giulio Formenti, Fátima Gil, Miguel Grilo, Alessio Iannucci, Henrique G Leitão, Cristina Máguas, Ann M Mc Cartney, Sofia L Mendes, João M Moreno, Marco Morselli, Alice Mouton, Chiara Natali, Fernando Pereira, Rúben MC Rego, Roberto Resendes, Guilherme Roxo, Hannes Svardal, Helena Trindade, Sara Vicente, Sylke Winkler, Marcela Alvarenga, Andreia J Amaral, Agostinho Antunes, Paula F Campos, Adelino VM Canário, Rita Castilho, L Filipe C Castro, Angelica Crottini, Mónica V Cunha, Gonçalo Espregueira Themudo, Pedro J Esteves, Rui Faria, Carlos Rodríguez Fernandes, Jean-Baptiste Ledoux, Bruno Louro, Sara Magalhaes, Octávio S Paulo, Gareth Pearson, João Pimenta, Francisco Pina-Martins, Teresa L Santos, Ester Serrão, José Melo-Ferreira, Vítor C Sousa\ Building a Portuguese coalition for biodiversity genomics\ npj Biodiversity 3 (1), 27 (Sep 17, 2024) \ DOI: 10.1038/s44185-024-00061-7
Bernadette J Stolz, Jagdeep Dhesi, Joshua A Bull, Heather A Harrington, Helen M Byrne, Iris HR Yoon\ Relational Persistent Homology for Multispecies Data with Application to the Tumor Microenvironment\ Bulletin of mathematical biology 86 (11), 128 (Sep 17, 2024) \ DOI: 10.1007/s11538-024-01353-6
Lucas Benoit–Maréchal, Ingo Nitschke, Axel Voigt, Marco Salvalaglio\ Mesoscale modeling of deformations and defects in thin crystalline sheets\ Mechanics of Materials 198, 105114 (Sep 13, 2024) \ DOI: 10.1016/j.mechmat.2024.105114
Pietro Luigi Muzzeddu, Andrea Gambassi, Jens-Uwe Sommer, Abhinav Sharma\ Migration and Separation of Polymers in Nonuniform Active Baths\ Phys. Rev. Lett. 133, 118102 (Sep 11, 2024) \ DOI: 10.1103/PhysRevLett.133.118102
Lior Aram, Diede de Haan, Neta Varsano, James B. Gilchrist, Christoph Heintze, Ron Rotkopf, Katya Rechav, Nadav Elad, Nils Kröger, Assaf Ga\ Intracellular morphogenesis of diatom silica is guided by local variations in membrane curvature\ Nat Commun 15, 7888 (Sep 10, 2024) \ DOI: 10.1038/s41467-024-52211-x
Jochen Krattenmacher, Manuel Lera-Ramirez, Alexandre Beber, Stepan Herynek, Lenka Grycova, Xiaocheng Liu, Pavel Neuzil, Francois Nedelec, Stefan Diez, Marcus Braun, Zdenek Lansky\ Ase1 selectively increases the lifetime of antiparallel microtubule overlaps\ Current Biology 34(17):4071–4080 (Sep 9, 2024) \ DOI: 10.1016/j.cub.2024.07.055
Georg Krainer, Raphael PB Jacquat, Matthias M Schneider, Timothy J Welsh, Jieyuan Fan, Quentin AE Peter, Ewa A Andrzejewska, Greta Šneiderienė, Magdalena A Czekalska, Hannes Ausserwoeger, Lin Chai, William E Arter, Kadi L Saar, Therese W Herling, Titus M Franzmann, Vasilis Kosmoliaptsis, Simon Alberti, F Ulrich Hartl, Steven F Lee, Tuomas PJ Knowles\ Single-molecule digital sizing of proteins in solution\ Nature Communications 15 (1), 7740 (Sep 4, 2024) \ DOI: 10.1038/s41467-024-50825-9
Heather A Harrington, Mike Stillman, Alan Veliz-Cuba\ Algebraic network reconstruction of discrete dynamical systems\ Advances in Applied Mathematics 161, 102760 (Sep 4, 2024) \ DOI: 10.1016/j.aam.2024.102760
Alfonso Martinez Arias, Nicolas Rivron, Naomi Moris, Patrick Tam, Cantas Alev, Jianping Fu, Anna-Katerina Hadjantonakis, Jacob H. Hanna, Gabriella Minchiotti, Olivier Pourquie, Guojun Sheng, Liliana Solnica Krezel, Jesse V. Veenvliet, Aryeh Warmflash\ Criteria for the standardization of stem-cell-based embryo models\ Nat Cell Biol 26, 1625–1628 (Sep 2, 2024) \ DOI: 10.1038/s41556-024-01492-x
Rachael Deis, Tali Lerer-Goldshtein, Olha Baiko, Zohar Eyal, Dolev Brenman-Begin, Moshe Goldsmith, Sylvia Kaufmann, Uwe Heinig, Yonghui Dong, Sofya Lushchekina, Neta Varsano, Tsviya Olender, Meital Kupervaser, Ziv Porat, Smadar Levin-Zaidman, Iddo Pinkas, Rita Mateus, Dvir Gur\ Genetic control over biogenic crystal morphogenesis in zebrafish\ Nature Chemical Biology (Aug 30, 2024) \ DOI: 10.1038/s41589-024-01722-1
Martin Schuessler, Luca Hormann, Raimund Dachselt, Andrew Blake, Carsten Rother\ Gazing Heads: Investigating Gaze Perception in Video-Mediated Communication\ ACM Transactions on Computer-Human Interaction, Volume 31, Issue 3 (Aug 30, 2024) \ DOI: 10.1145/3660343
Clemens Bilsing, Erik Nützenadel, Sebastian Burgmann, Jürgen Czarske, Lars Büttner\ Adaptive-optical 3D microscopy for microfluidic multiphase flows\ Light: Advanced Manufacturing 5, 35 (Aug 26, 2024) \ DOI: 10.37188/lam.2024.037
Thomas Chaplin, Heather A Harrington, Ulrike Tillmann\ Grounded Persistent Path Homology: A Stable, Topological Descriptor for Weighted Digraphs\ Foundations of Computational Mathematics, 1-66 (Aug 23, 2024) \ DOI: 10.1007/s10208-024-09679-2
Matthias P Lutolf, Milica Radisic, Jeffrey Beekman, Dan Dongeun Huh, Meritxell Huch, Margherita Yayoi Turco, Zeinab Niloofar Tahmasebi Birgani, Dong Gao, Rui Yao, Hang Lin, Takanori Takebe\ In vitro human cell-based models: What can they do and what are their limitations?\ Cell 187 (17), 4439-4443 (Aug 22, 2024) \ DOI: 10.1016/j.cell.2024.07.042
Evelyn Abraham, Hella Hartmann, Takeshi Yoshimatsu, Tom Baden, Michael Brand\ Restoration of cone-circuit functionality in the regenerating adult zebrafish retina\ Dev Cell, 59(16):2158-2170.e6. (Aug 19, 2024) \ DOI: 10.1016/j.devcel.2024.07.005
Harish P. Jain, Axel Voigt, Luiza Angheluta\ From cell intercalation to flow, the importance of T1 transitions\ Phys. Rev. Research 6, 033176 (Aug 15, 2024) \ DOI: 10.1103/PhysRevResearch.6.033176
Marcel Jipp, Bente D Wagner, Lisa Egbringhoff, Andreas Teichmann, Angela Rübeling, Paul Nieschwitz, Alf Honigmann, Alexey Chizhik, Tabea A Oswald, Andreas Janshoff\ Cell-substrate distance fluctuations of confluent cells enable fast and coherent collective migration\ Cell Reports 43 (8) (online: Aug 15, 2024) \ DOI: 16/j.celrep.2024.114553
Manfred Schartl, Joost M Woltering, Iker Irisarri, Kang Du, Susanne Kneitz, Martin Pippel, Thomas Brown, Paolo Franchini, Jing Li, Ming Li, Mateus Adolfi, Sylke Winkler, Josane de Freitas Sousa, Zhuoxin Chen, Sandra Jacinto, Evgeny Z Kvon, Luis Rogério Correa de Oliveira, Erika Monteiro, Danielson Baia Amaral, Thorsten Burmester, Domitille Chalopin, Alexander Suh, Eugene Myers, Oleg Simakov, Igor Schneider, Axel Meyer\ The genomes of all lungfish inform on genome expansion and tetrapod evolution\ Nature 634 (8032), 96-103 (Aug 14, 2024) \ DOI: 10.1038/s41586-024-07830-1
Sangwoo Kim, Rana Amini, Shuo-Ting Yen, Petr Pospisil, Arthur Boutillon, Ilker Ali Deniz, Otger Campàs*\ A nuclear jamming transition in vertebrate organogenesis\ Nat. Mater. 23(11):1592–1599 (Aug 12, 2024) \ * corresponding author \ DOI: 10.1038/s41563-024-01972-3
Leone Rossetti, Steffen Grosser, Juan Francisco Abenza, Léo Valon, Pere Roca-Cusachs, Ricard Alert, Xavier Trepat\ Optogenetic generation of leader cells reveals a force–velocity relation for collective cell migration\ Nature Physics, 1–11 (Aug 12, 2024) \ DOI: 10.1038/s41567-024-02600-2
Pilar Lörzing, Philipp Schake, Michael Schlierf\ Anisotropic DBSCAN for 3D SMLM Data Clustering\ The Journal of Physical Chemistry B, Vol 128/Issue 33 (Aug 12, 2024) \ DOI: doi/10.1021/acs.jpcb.4c02030
Markus Mukenhirn, Chen-Ho Wang, Tristan Guyomar, Matthew J. Bovyn, Michael F. Staddon, Rozemarijn E. van der Veen, Riccardo Maraspini, Linjie Lu, Cecilie Martin-Lemaitre, Masaki Sano, Martin Lehmann, Tetsuya Hiraiwa, Daniel Riveline, Alf Honigmann\ Tight junctions control lumen morphology via hydrostatic pressure and junctional tension\ Developmental Cell 59, 1–16 (online: Aug 12, 2024) \ DOI: 10.1016/j.devcel.2024.07.016
Jana F. Fuhrmann, Abhijeet Krishna, Joris Paijmans, Charlie Duclut, Greta Cwikla, Suzanne Eaton, Marko Popović, Frank Jülicher, Carl D. Modes, Natalie A. Dye\ Active shape programming drives Drosophila wing disc eversion\ Sci. Adv.10,eadp0860 (Aug 9, 2024) \ DOI: 10.1126/sciadv.adp0860
Tzer Han Tan, Aboutaleb Amiri, Irene Seijo-Barandiaran, Michael F. Staddon, Anne Materne, Sandra Tomas, Charlie Duclut, Marko Popović, Anne Grapin-Botton, Frank Jülicher\ Emergent Chirality in Active Solid Rotation of Pancreas Spheres\ PRX Life 2, 033006 (Aug 8, 2024) \ DOI: 10.1103/PRXLife.2.033006
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Karina Pombo-García, Omar Adame-Arana, Cecilie Martin-Lemaitre, Frank Jülicher, Alf Honigmann\ Membrane prewetting by condensates promotes tight-junction belt formation\ Nature 632, pages 647–655 (Aug 7, 2024) \ DOI: 10.1038/s41586-024-07726-0
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Ping Liu, Refeya Jannatul, Juan Chen, Lihua Hou, Mingjuan Gao, Pengjie Wang, Lulu Wang, Dekui Jin, Hao Chen, Rong Liu, Ran Wang, Yinhua Zhu, Bing Fang, Lirong Jia, Yanan Sun, Yixin Zhang, Fazheng Ren, Weilin Lin\ Programmable Chemical Evolution with Natural/Non-Natural Building Blocks\ Angewandte Chemie, 63(46):e202409746 (Jul 29, 2024) \ DOI: 10.1002/anie.202409746
Yanis Baouche, Thomas Franosch, Matthias Meiners, Christina Kurzthaler\ Active Brownian particle under stochastic orientational resetting\ New J. Phys. 26 073041 (Jul 25, 2024) \ DOI: 10.1088/1367-2630/ad602a
Rebecca Rothe, Yong Xu, Johanna Wodtke, Florian Brandt, Sebastian Meister, Markus Laube, Pier-Luigi Lollini, Yixin Zhang, Jens Pietzsch, Sandra Hauser\ Programmable Release of Chemotherapeutics from Ferrocene-Based Injectable Hydrogels Slows Melanoma Growth\ Advanced healthcare materials, 13(27):2400265 (Jul 24, 2024) \ DOI: 10.1002/adhm.202400265
Uwe Töpfer, Jinhee Ryu, Karla Yanín Guerra Santillán, Jana Schulze, Elisabeth Fischer-Friedrich, Guy Tanentzapf, Christian Dahmann\ AdamTS proteases control basement membrane heterogeneity and organ shape in Drosophila\ Cell Reports 43(7), 114399 (Jul 23, 2024) \ DOI: 10.1016/j.celrep.2024.114399
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Liyuan Sui, Christian Dahmann\ A cellular tilting mechanism important for dynamic tissue shape changes and cell differentiation in Drosophila\ Developmental Cell 59(14), 1794–1808 (Jul 22, 2024) \ DOI: 10.1016/j.devcel.2024.04.011
Jenna Hoersten, Gloria Ruiz-Gómez, Maciej Paszkowski-Rogacz, Giorgio Gilioli, Pedro Manuel Guillem-Gloria, Felix Lansing, M Teresa Pisabarro, Frank Buchholz\ Engineering spacer specificity of the Cre/loxP system\ Nucleic Acids Research, gkae481 (Jul 22, 2024) \ DOI: 10.1093/nar/gkae481
Michael Nestler, Axel Voigt\ A diffuse interface approach for vector-valued PDEs on surfaces\ Communications in Mathematical Sciences (Jul 18, 2024) \ DOI: 10.4310/CMS.2024.v22.n6.a13
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Oliver Bludau, Anke Weber, Viktoria Bosak, Veronika Kuscha, Kristin Dietrich, Stefan Hans, Michael Brand\ Inflammation is a critical factor for successful regeneration of the adult zebrafish retina in response to diffuse light lesion\ Front. Cell Dev. Biol. 12:1332347. (Jul 12, 2024) \ DOI: 10.3389/fcell.2024.1332347
Nicolás Bettancourt, Cristian Pérez-Gallardo, Valeria Candia, Pamela Guevara, Yannis Kalaidzidis, Marino Zerial, Fabián Segovia-Miranda, Hernán Morales-Navarrete\ Virtual tissue microstructure reconstruction across species using generative deep learning\ Plos one 19 (7), e0306073 (Jul 12, 2024) \ DOI: 10.1371/journal.pone.0306073
Hadrien Oliveri, Derek E Moulton, Heather A Harrington, Alain Goriely\ Active shape control by plants in dynamic environments\ Phys. Rev. E 110, 014405 (Jul 12, 2024) \ DOI: 10.1103/PhysRevE.110.014405
Xi Chen, Rabea Seyboldt, Jens-Uwe Sommer, Frank Jülicher, Tyler Harmon\ Droplet Differentiation by a Chemical Switch\ Phys. Rev. Lett. 133, 028402 (Jul 9, 2024) \ DOI: 10.1103/PhysRevLett.133.028402
Franziska Ullm, Alexander Renner, Uwe Freudenberg, Carsten Werner, Tilo Pompe\ The Influence of Sulfation Degree of Glycosaminoglycan-Functionalized 3D Collagen I Networks on Cytokine Profiles of In Vitro Macrophage–Fibroblast Cocultures\ Gels 10 (7), 450 (Jul 9, 2024) \ DOI: 10.3390/gels10070450
Lennart J Schulze, Sachin KT Veettil, Ivo F Sbalzarini\ A high-order fully Lagrangian particle level-set method for dynamic surfaces\ Journal of Computational Physics 515, 113262 (Jul 8, 2024) \ DOI: 10.1016/j.jcp.2024.113262
Miki Ebisuya, Teresa Rayon, Margarete Diaz-Cuadros, Kevin J. Chalut, Gang Wu, Antony N. Dodd, Maria-Elena Torres-Padilla, Michael Levine, Vadim N. Gladyshev\ Understanding how cells and organisms keep time during development\ Developmental Cell (Jul 8, 2024) \ DOI: 10.1016/j.devcel.2024.05.029
Lewis Marsh, Felix Y Zhou, Xiao Qin, Xin Lu, Helen M Byrne, Heather A Harrington\ Detecting Temporal shape changes with the Euler Characteristic Transform\ Transactions of Mathematics and Its Applications 8 (2), tnae002 (Jul 4, 2024) \ DOI: 10.1093/imatrm/tnae002
Cedric Landerer, Maxim Scheremetjew, HongKee Moon, Lena Hersemann, Agnes Toth-Petroczy\ deTELpy: Python package for high-throughput detection of amino acid substitutions in mass spectrometry datasets\ Bioinformatics, Volume 40, Issue 7 (Jun 28, 2024) \ DOI: 10.1093/bioinformatics/btae424
Natalia Jaroszynska, Andrea Salzinger, Themistoklis M. Tsarouchas, Catherina G. Becker, Thomas Becker, David A. Lyons, Ryan B. MacDonald, Marcus Keatinge\ C9ORF72 Deficiency Results in Neurodegeneration in the Zebrafish Retina\ Journal of Neuroscience, 44 (25) e2128232024 (Jun 19, 2024) \ DOI: 10.1523/JNEUROSCI.2128-23.2024
Katherine Benjamin, Aneesha Bhandari, Jessica D Kepple, Rui Qi, Zhouchun Shang, Yanan Xing, Yanru An, Nannan Zhang, Yong Hou, Tanya L Crockford, Oliver McCallion, Fadi Issa, Joanna Hester, Ulrike Tillmann, Heather A Harrington, Katherine R Bull\ Multiscale topology classifies cells in subcellular spatial transcriptomics\ Nature 630 (8018), 943-949 (Jun 19, 2024) \ DOI: 10.1038/s41586-024-07563-1
Julian Rode, Maja Novak, Benjamin M. Friedrich\ Information Theory of Chemotactic Agents Using Both Spatial and Temporal Gradient Sensing\ PRX Life 2(2), 023012 (Jun 18, 2024) \ DOI: 10.1103/PRXLife.2.023012
Adriano Bolondi, Benjamin K. Law, Helene Kretzmer, Seher Ipek Gassaloglu, René Buschow, Christina Riemenschneider, Dian Yang, Maria Walther, Jesse V. Veenvliet, Alexander Meissner, Zachary D. Smith, Michelle M. Chan\ Reconstructing axial progenitor field dynamics in mouse stem cell-derived embryoids\ Developmental Cell 59, 1489–1505 (Jun 17, 2024) \ DOI: 10.1016/j.devcel.2024.03.024
Teije C. Middelkoop, Jonas Neipel, Caitlin E. Cornell, Ronald Naumann, Lokesh G. Pimpale, Frank Jülicher, Stephan W. Grill\ A cytokinetic ring-driven cell rotation achieves Hertwig’s rule in early development\ Proc. Natl. Acad. Sci. USA 121(25), e2318838121 (Jun 13, 2024) \ DOI: 10.1073/pnas.2318838121
Anita Ludwig‐Husemann, Peter Schertl, Ananya Shrivastava, Udo Geckle, Johanna Hafner, Frank Schaarschmidt, Norbert Willenbacher, Uwe Freudenberg, Carsten Werner, Cornelia Lee‐Thedieck\ A Multifunctional Nanostructured Hydrogel as a Platform for Deciphering Niche Interactions of Hematopoietic Stem and Progenitor Cells\ Advanced Healthcare Materials 13 (22), 2304157 (Jun 13, 2024) \ DOI: 10.1002/adhm.202304157
Katharina Hilbig, Russell Towers, Marc Schmitz, Martin Bornhäuser, Petra Lennig, Yixin Zhang\ Cyclosporin A-Based PROTACs Can Deplete Abundant Cellular Cyclophilin A without Suppressing T Cell Activation\ Molecules, 29(12) (Jun 11, 2024) \ DOI: 10.3390/molecules29122779
Kush Mohan Mittal, Marc Timme, Malte Schröder\ Efficient self-organization of informal public transport networks\ Nature Communications 15 (1), 4910 (Jun 8, 2024) \ DOI: 10.1038/s41467-024-49193-1
Rainer Backofen, Abdelrahman Y. A. Altawil, Marco Salvalaglio, and Axel Voigt\ Nonequilibrium hyperuniform states in active turbulence\ Proc Natl Acad Sci U S A 121(24):e2320719121 (Jun 7, 2024) \ DOI: 10.1073/pnas.2320719121
Sophie Klempahn, Helmut Schiessel, Ralf Blossey\ Chromatin remodelers: a concise introduction for biophysicists\ Biophysical Reviews Volume 16, pages 357–363 (Jun 6, 2024) \ DOI: 10.1007/s12551-024-01199-1
Sophie Klempahn, Ralf Blossey, Helmut Schiessel\ Molecular motor in a box: Attractors, repellers, and ratchets in chromatin\ Phys. Rev. Research 6, 023236 (Jun 3, 2024) \ DOI: 10.1103/PhysRevResearch.6.023236
Laura Meißner, Lukas Niese, Stefan Diez\ Helical motion and torque generation by microtubule motors\ Current Opinion in Cell Biology 88:102367 (Jun 1, 2024) \ DOI: 10.1016/j.ceb.2024.102367
Julian Lich, Tom Glosemeyer, Jürgen Czarske, Robert Kuschmierz\ Single-shot 3D incoherent imaging with diffuser endoscopy\ Light: Advanced Manufacturing 5(2):218-228 (online: May 30, 2024) \ DOI: 10.37188/lam.2024.015
Seungjae Lee, Lucas Braun, Frieder Bönisch, Malte Schröder, Moritz Thümler, Marc Timme\ Complexified synchrony\ Chaos: An Interdisciplinary Journal of Nonlinear Science 34 (5) (May 30, 2024) \ DOI: 10.1063/5.0205897
Hongjuan Zhang, Dongqi Liu, Jiawei Zhang, Ellen Adams, Jingjing Gong, Wenhui Li, Bing Wang, Xueqing Liu, Renqiang Yang, Feng Wei, Heather C. Allen\ GMP affected assembly behaviors of phosphatidylethanolamine monolayers elucidated by multi-resolved SFG-VS and BAM\ Colloids and Surfaces B: Biointerfaces, 241, 113995 (May 26, 2024) \ DOI: 10.1016/j.colsurfb.2024.113995
Maria Luisa Romero, Jonas Poehls, Anastasiia Kirilenko, Doris Richter, Tobias Jumel, Anna Shevchenko, Agnes Toth-Petroczy\ Environment modulates protein heterogeneity through transcriptional and translational stop codon readthrough\ Nature Communications volume 15, Article number: 4446 (May 24, 2024) \ DOI: 10.1038/s41467-024-48387-x
Suse Seidemann, Florian Salomon, Karl B. Hoffmann, Thomas Kurth, Ivo F. Sbalzarini, Robert Haase, Marius Ader\ Automated quantification of photoreceptor outer segments in developing and degenerating retinas on microscopy images across scales\ Front. Mol. Neurosci. Sec. Methods and Model Organisms Volume 17 (May 24, 2024) \ DOI: 10.3389/fnmol.2024.1398447
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Mrityunjoy Kar, Laura T Vogel, Gaurav Chauhan, Suren Felekyan, Hannes Ausserwöger, Timothy J Welsh, Furqan Dar, Anjana R Kamath, Tuomas PJ Knowles, Anthony A Hyman, Claus AM Seidel, Rohit V Pappu\ Solutes unmask differences in clustering versus phase separation of FET proteins\ Nature communications 15 (1), 4408 (May 23, 2024) \ DOI: 10.1038/s41467-024-48775-3
Arthur Boutillon, Samhita P. Banavar, Otger Campàs*\ Conserved physical mechanisms of cell and tissue elongation\ Development 151(10): dev202687 (May 20, 2024) \ * corresponding author \ DOI: 10.1242/dev.202687
Arun Pal, Dajana Grossmann, Hannes Glaß, Vitaly Zimyanin, René Günther, Marica Catinozzi, Tobias M Boeckers, Jared Sterneckert, Erik Storkebaum, Susanne Petri, Florian Wegner, Stephan W Grill, Francisco Pan-Montojo, Andreas Hermann\ Glycolic acid and D-lactate—putative products of DJ-1—restore neurodegeneration in FUS - and SOD1-ALS\ Life Science Alliance, 7 (8) e202302535; (May 17, 2024) \ DOI: /10.26508/lsa.202302535
Chao-Yuan Chang, Glen Pearce, Viktoria Betaneli, Tatsiana Kapustsenka, Kamran Hosseini, Elisabeth Fischer-Friedrich, Denis Corbeil, Jana Karbanová, Anna Taubenberger, Björn Dahncke, Martina Rauner, Giulia Furesi, Sven Perner, Fabian Rost, Rolf Jessberger\ The F-actin bundler SWAP-70 promotes tumor metastasis\ Life Science Alliance 7(8) (May 17, 2024) \ DOI: 10.26508/lsa.202302307
Georgios Tsissios, Anthony Sallese, J. Raul Perez-Estrada, Jared A. Tangeman, Weihao Chen, Byran Smucker, Sophia C. Ratvasky, Erika Grajales-Esquivel, Arielle Martinez, Kimberly J. Visser, Alberto Joven Araus, Hui Wang, András Simon, Maximina H. Yun, Katia Del Rio-Tsonis\ Macrophages modulate fibrosis during newt lens regeneration\ Stem Cell Res Ther. 14;15(1):141 (May 14, 2024) \ DOI: 10.1186/s13287-024-03740-1
Jiawei Sun, Robert Kuschmierz, Ori Katz, Nektarios Koukourakis, Juergen W. Czarske\ Lensless fiber endomicroscopy in biomedicine\ PhotoniX 5, 18 (May 14, 2024) \ DOI: 10.1186/s43074-024-00133-8
Linjie Lu, Tristan Guyomar, Quentin Vagne, Rémi Berthoz, Alejandro Torres-Sánchez, Michèle Lieb, Cecilie Martin-Lemaitre, Kobus van Unen, Alf Honigmann, Olivier Pertz, Daniel Riveline, Guillaume Salbreux\ Polarity-driven three-dimensional spontaneous rotation of a cell doublet\ Nature Physics (May 13, 2024) \ DOI: 10.1038/s41567-024-02460-w
Zeyu Gao, Xinlan Ge, Licheng Zhu, Shiqing Ma, Li Ao, Lars Büttner, Jürgen Czarske, Ping Yang\ Flow Field Estimation with Distortion Correction Based on Multiple Input Deep Convolutional Neural Networks and Hartmann–Shack Wavefront Sensing\ Photonics 11 (5), 452 (May 11, 2024) \ DOI: 10.3390/photonics11050452
Conrad Möckel, Timon Beck, Sara Kaliman, Shada Abuhattum, Kyoohyun Kim, Julia Kolb, Daniel Wehner, Vasily Zaburdaev, Jochen Guck\ Estimation of the mass density of biological matter from refractive index measurements\ Biophysical Reports 4 (2) (May 7, 2024) \ DOI: 10.1016/j.bpr.2024.100156
Miki Ebisuya, James Briscoe\ Timing and Tempo in Development\ Current Opinion in Genetics & Development (online: May 3, 2024) \ DOI: 10.1016/j.gde.2024.102202
Christine Desroches Altamirano, Moo-Koo Kang, Mareike A Jordan, Tom Borianne, Irem Dilmen, Maren Gnädig, Alexander von Appen, Alf Honigmann, Titus M Franzmann, Simon Alberti\ eIF4F is a thermo-sensing regulatory node in the translational heat shock response\ Molecular Cell 84 (9), 1727-1741. e12 (May 2, 2024) \ DOI: 10.1016/j.molcel.2024.02.038
Marco Salvalaglio, Dominic J. Skinner, Jörn Dunkel, Axel Voigt\ Persistent homology and topological statistics of hyperuniform point clouds\ Phys. Rev. Research 6, 023107 (May 1, 2024) \ DOI: 10.1103/PhysRevResearch.6.023107
Ilyasse Belkacem, Christian Tominski, Nicolas Médoc, Søren Knudsen, Raimund Dachselt, Mohammad Ghoniem\ Interactive Visualization on Large High‐Resolution Displays: A Survey\ Computer Graphics Forum 43 (6), e15001 (Apr 30, 2024) \ DOI: 10.1111/cgf.15001
OSBP-mediated PI(4)P-cholesterol exchange at endoplasmic reticulum-secretory granule contact sites controls insulin secretion\ OSBP-mediated PI(4)P-cholesterol exchange at endoplasmic reticulum-secretory granule contact sites controls insulin secretion\ Cell Reports 43 (4) (Apr 23, 2024) \ DOI: 10.1016/j.celrep.2024.113992
Daniel Dornbusch, Marcel Hanke, Emilia Tomm, Charlotte Kielar, Guido Grundmeier, Adrian Keller, Karim Fahmy\ Cold denaturation of DNA origami nanostructures\ Chem. Commun., 60, 5590-5593 (Apr 22, 2024) \ DOI: 10.1039/D3CC05985E
Charlie Duclut, Stefano Bo, Ruben Lier, Jay Armas, Piotr Surówka, Frank Jülicher\ Probe particles in odd active viscoelastic fluids: How activity and dissipation determine linear stability\ Phys. Rev. E 109, 044126 (Apr 10, 2024) \ DOI: 10.1103/PhysRevE.109.044126
Charlotte Lotze, Philip Marszal, Malte Schröder, Marc Timme\ Taming travel time fluctuations through adaptive stop pooling\ Journal of Physics: Complexity 5 (2), 025001 (Apr 10, 2024) \ DOI: 10.1088/2632-072X/ad370a
Cristina Cacho-Navas, Carmen López-Pujante, Natalia Reglero-Real, Natalia Colás-Algora, Ana Cuervo, José Javier Conesa, Susana Barroso, Gema de Rivas, Sergio Ciordia, Alberto Paradela, Gianluca D'Agostino, Carlo Manzo, Jorge Feito, Germán Andrés, Francisca Molina-Jiménez, Pedro Majano, Isabel Correas, José-Maria Carazo, Sussan Nourshargh, Meritxell Huch, Jaime Millán\ ICAM-1 nanoclusters regulate hepatic epithelial cell polarity by leukocyte adhesion-independent control of apical actomyosin\ Elife 12, RP89261 (Apr 10, 2024) \ DOI: 10.7554/eLife.89261.3
Abrar Hakami, Kaushik Narasimhan, Giulia Comini, Julian Thiele, Carsten Werner, Eilís Dowd, Ben Newland\ Cryogel microcarriers for sustained local delivery of growth factors to the brain\ Journal of Controlled Release 369, 404-419 (Apr 4, 2024) \ DOI: 10.1016/j.jconrel.2024.03.023
Neha Pincha Shroff, Pengfei Xu, Sangwoo Kim, Elijah R Shelton, Ben J Gross, Yucen Liu, Carlos O Gomez, Qianlin Ye, Tingsheng Yu Drennon, Jimmy K Hu, Jeremy BA Green, Otger Campàs*, Ophir D Klein*\ Proliferation-driven mechanical compression induces signalling centre formation during mammalian organ development\ Nature Cell Biology 26, 519–529 (Apr 3, 2024) \ * co-corresponding authors \ DOI: 10.1038/s41556-024-01380-4
Otger Campàs*, Ivar Noordstra, Alpha S. Yap*\ Adherens junctions as molecular regulators of emergent tissue mechanics\ Nat Rev Mol Cell Biol 25(4):252–269 (Apr 2024) \ * co-corresponding authors \ DOI: 10.1038/s41580-023-00688-7
Bethan Clark, Aaron Hickey, Aleksandra Marconi, Bettina Fischer, Joel Elkin, Rita Mateus, M. Emília Santos\ Developmental plasticity and variability in the formation of egg-spots, a pigmentation ornament in the cichlid Astatotilapia calliptera\ Evolution & Development, 26, e12475 (Mar 30, 2024) \ DOI: 10.1111/ede.12475
Johannes Soltwedel, Theresa Suckert, Elke Beyreuther, Moritz Schneider, Marc Boucsein, Elisabeth Bodenstein, Sindi Nexhipi, Liane Stolz-Kieslich, Mechthild Krause, Cläre von Neubeck, Robert Haase, Armin Lühr, Antje Dietrich\ Slice2Volume: Fusion of multimodal medical imaging and light microscopy data of irradiation-injured brain tissue in 3D\ Radiotherapy and Oncology 182, 109591 (Mar 30, 2024) \ DOI: 10.1016/j.radonc.2023.109591
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Martin Neukam, Pia Sala, Andreas-David Brunner, Katharina Ganß, Alessandra Palladini, Michal Grzybek, Oleksandra Topcheva, Jovana Vasiljević, Johannes Broichhagen, Kai Johnsson, Thomas Kurth, Matthias Mann, Ünal Coskun, Michele Solimena\ Purification of time-resolved insulin granules reveals proteomic and lipidomic changes during granule aging\ Cell Reports 43 (3) (Mar 26, 2024) \ DOI: 10.1016/j.celrep.2024.113836
Giulio Superti‐Furga, Marta Agostinho, Jo Bury, Simon Cook, Christine Durinx, Anita Ender, Henri van Luenen, Anders H Lund, René H Medema, Marta Miączyńska, Dorthe Nickel, Pier Giuseppe Pelicci, Alain Puisieux, Samuli Ripatti, Maike Sander, Dirk Schubeler, Luis Serrano, Thomas Sommer, Katrine Sonne‐Hansen, Pavel Tomančák, Joan Vives, John Vontas, Mónica Bettencourt‐Dias\ EU-LIFE charter of independent life science research institutes\ FEBS letters 598 (7), 719-724 (Mar 21, 2024) \ DOI: 10.1002/1873-3468.14855
Maja Illig, Kevin Jahnke, Lukas P Weise, Marlene Scheffold, Ulrike Mersdorf, Hauke Drechsler, Yixin Zhang, Stefan Diez, Jan Kierfeld, Kerstin Göpfrich\ Triggered contraction of self-assembled micron-scale DNA nanotube rings\ Nat Commun 15(1):2307 (Mar 14, 2024) \ DOI: 10.1038/s41467-024-46339-z
Pavan K Bendapudi, Sumaiya Nazeen, Justine Ryu, Onuralp Söylemez, Alissa Robbins, Betty Rouaisnel, Jillian K O’Neil, Ruchika Pokhriyal, Moua Yang, Meaghan Colling, Bryce Pasko, Michael Bouzinier, Lindsay Tomczak, Lindsay Collier, David Barrios, Sanjay Ram, Agnes Toth-Petroczy, Joel Krier, Elizabeth Fieg, Walter H Dzik, James C Hudspeth, Olga Pozdnyakova, Valentina Nardi, James Knight, Richard Maas, Shamil Sunyaev, Julie-Aurore Losman\ Low-frequency inherited complement receptor variants are associated with purpura fulminans\ Blood 143 (11), 1032-1044 (Mar 14, 2024) \ DOI: 10.1182/blood.2023021231
Ivan Mestres, Azra Atabay, Joan-Carles Escolano, Solveig Arndt, Klara Schmidtke, Maximilian Einsiedel, Melina Patsonis, Lizbeth Airais Bolaños-Castro, Maximina Yun, Nadine Bernhardt, Anna Taubenberger, Federico Calegari\ Manipulation of the nuclear envelope-associated protein SLAP during mammalian brain development affects cortical lamination and exploratory behavior\ Biol Open 1;13(3):bio060359 (Mar 11, 2024) \ DOI: 10.1242/bio.060359
Christina Kurzthaler, Danielle L. Chase, Howard A. Stone\ Surface corrugations induce helical near-surface flows and transport in microfluidic channels\ Journal of Fluid Mechanics. 982:A31 (Mar 11, 2024) \ DOI: 10.1017/jfm.2024.106
Frank Jülicher, Christoph A Weber\ Droplet Physics and Intracellular Phase Separation\ Annual Review of Condensed Matter Physics 15 (1), 237-261 (Mar 11, 2024) \ DOI: 10.1146/annurev-conmatphys-031720-032917
Nicholas R Dennison, Maximilian Fusenig, Lisa Grönnert, Manfred F Maitz, Maria Alejandra Ramirez Martinez, Manja Wobus, Uwe Freudenberg, Martin Bornhäuser, Jens Friedrichs, Peter D Westenskow, Carsten Werner\ Precision Culture Scaling to Establish High‐Throughput Vasculogenesis Models\ Advanced Healthcare Materials, 2400388 (Mar 11, 2024) \ DOI: 10.1002/adhm.202400388
Niklas Beschorner, Paul Künzle, Maike Voges, Ilona Hauber, Daniela Indenbirken, Jacqueline Nakel, Sanamjeet Virdi, Peter Bradtke, Niels Christian Lory, Michael Rothe, Maciej Paszkowski-Rogacz, Frank Buchholz, Adam Grundhoff, Axel Schambach, Christian Thirion, Hans-Willi Mittrücker, Julian Schulze zur Wiesch, Joachim Hauber, Jan Chemnitz\ Preclinical toxicity analyses of lentiviral vectors expressing the HIV-1 LTR-specific designer-recombinase Brec1\ Plos one 19 (3), e0298542 (Mar 8, 2024) \ DOI: 10.1371/journal.pone.0298542
Tina Helmecke, Dominik Hahn, André Ruland, Mikhail V. Tsurkan, Manfred F. Maitz, Carsten Werner\ Adsorbed polymer conjugates to adaptively inhibit blood coagulation activation by medical membranes\ Journal of Controlled Release 368:344–354 (Mar 6, 2024) \ DOI: 10.1016/j.jconrel.2024.02.034
Tim Pasch, Nicole Bäumer, Sebastian Bäumer, Frank Buchholz, Henning D Mootz\ Towards targeted Cas9 (CRISPR-Cas) delivery: Preparation of IgG antibody-Cas9 conjugates using a split intein\ Journal of Peptide Science 30 (7), e3592 (Mar 6, 2024) \ DOI: 10.1002/psc.3592
Federica Vecchio, Alexia Carré, Daniil Korenkov, Zhicheng Zhou, Paola Apaolaza, Soile Tuomela, Orlando Burgos-Morales, Isaac Snowhite, Javier Perez-Hernandez, Barbara Brandao, Georgia Afonso, Clémentine Halliez, John Kaddis, Sally C Kent, Maki Nakayama, Sarah J Richardson, Joelle Vinh, Yann Verdier, Jutta Laiho, Raphael Scharfmann, Michele Solimena, Zuzana Marinicova, Elise Bismuth, Nadine Lucidarme, Janine Sanchez, Carmen Bustamante, Patricia Gomez, Soren Buus, nPOD-Virus Working Group, Sylvaine You, Alberto Pugliese, Heikki Hyoty, Teresa Rodriguez-Calvo, Malin Flodstrom-Tullberg, Roberto Mallone\ Coxsackievirus infection induces direct pancreatic β cell killing but poor antiviral CD8+ T cell responses\ Science Advances 10 (10), eadl1122 (Mar 6, 2024) \ DOI: 10.1126/sciadv.adl1122
Federico Biavati, Luca Saba, Melinda Boussoussou, Klaus F. Kofoed, Theodora Benedek, Patrick Donnelly, José Rodríguez-Palomares, Andrejs Erglis, Cyril Štěchovský, Gintarė Šakalytė, Nada Čemerlić Ađić, Matthias Gutberlet, Jonathan D. Dodd, Ignacio Diez, Gershan Davis, Elke Zimmermann, Cezary Kępka, Radosav Vidakovic, Marco Francone, Małgorzata Ilnicka-Suckiel, Fabian Plank, Juhani Knuuti, Rita Faria, Stephen Schröder, Colin Berry, Balazs Ruzsics, Nina Rieckmann, Christine Kubiak, Kristian Schultz Hansen, Jacqueline Müller-Nordhorn, Pál Maurovich-Horvat, Per E. Sigvardsen, Imre Benedek, Clare Orr, Filipa Xavier Valente, Ligita Zvaigzne, Vojtěch Suchánek, Antanas Jankauskas, Filip Ađić, Michael Woinke, Diarmaid Cadogan, Iñigo Lecumberri, Erica Thwaite, Mariusz Kruk, Aleksandar N. Neskovic, Massimo Mancone, Donata Kuśmierz, Gudrun Feuchtner, Mikko Pietilä, Vasco Gama Ribeiro, Tanja Drosch, Christian Delles, Riccardo Cau, Michael Fisher, Bela Merkely, Charlotte Kragelund, Rosca Aurelian, Stephanie Kelly, Bruno García del Blanco, Ainhoa Rubio, Bálint Szilveszter, Jens D. Hove, Ioana Rodean, Susan Regan, Hug Cuéllar Calabria, István Ferenc Édes, Linnea Larsen, Roxana Hodas, Adriane E. Napp, Robert Haase, Sarah Feger, Mahmoud Mohamed, Lina M. Serna-Higuita, Konrad Neumann, Henryk Dreger, Matthias Rief, Viktoria Wieske, Matthew J. Budoff, Melanie Estrella, Peter Martus, Maria Bosserdt, Marc Dewey\ Coronary Artery Calcium Score Predicts Major Adverse Cardiovascular Events in Stable Chest Pain\ Radiology 310(3) (Mar 5, 2024) \ DOI: 10.1148/radiol.231557
- (Alumni Group) Robert Haase
Felix Horst, Elisabeth Bodenstein, Michael Brand, Stefan Hans, Leonhard Karsch, Elisabeth Lessmann, Steffen Löck, Michael Schürer, Jörg Pawelke, Elke Beyreuther\ Dose and dose rate dependence of the tissue sparing effect at ultra-high dose rate studied for proton and electron beams using the zebrafish embryo model\ Radiother Oncol. 194:110197. (online: Mar 5, 2024) \ DOI: 10.1016/j.radonc.2024.110197
Rhandrey Maestri, Subhadrakutty Radhakrishnakumar, Florian Bürkle, Wei Ding, Lars Büttner, Jürgen Czarske, Uwe Hampel, Gregory Lecrivain\ Equilibrium Taylor bubble in a narrow vertical tube with constriction\ Physics of Fluids 36(3) (Mar 4, 2024) \ DOI: 10.1063/5.0180157
Dinesh Sundaravadivelu Devarajan, Jiahui Wang, Beata Szała-Mendyk, Shiv Rekhi, Arash Nikoubashman, Young C. Kim, Jeetain Mittal\ Sequence-dependent material properties of biomolecular condensates and their relation to dilute phase conformations\ Nat Commun 15(1), 1912 (Mar 1, 2024) \ DOI: 10.1038/s41467-024-46223-w
Volodymyr Prokopets, Sebastian Götz, Uwe Aßmann, Christian Gutsche, Atul Anantheswar, Ines Wollny, Jerome Thiessat, Juliana Hildebrandt, Michael Kaliske, Wolfgang Lehner\ Work in Progress: Towards a Single Underlying Model for the Digital Twin of Future Road Infrastructures\ 2023 IEEE Smart World Congress (SWC) (Mar 1, 2024) \ DOI: 10.1109/swc57546.2023.10449106
Laura Meißner, Lukas Niese, Irene Schüring, Aniruddha Mitra, Stefan Diez\ Human kinesin-5 KIF11 drives the helical motion of anti-parallel and parallel microtubules around each other\ EMBO J 43:1244–1256 (Feb 29, 2024) \ DOI: 10.1038/s44318-024-00048-x
Iaroslav Babenko, Nils Kröger, Benjamin M. Friedrich\ Mechanism of branching morphogenesis inspired by diatom silica formation\ PNAS 121(10) e2309518121 (Feb 29, 2024) \ DOI: 10.1073/pnas.2309518121
Andreas Müller, Deborah Schmidt, Jan Philipp Albrecht, Lucas Rieckert, Maximilian Otto, Leticia Elizabeth Galicia Garcia, Gunar Fabig, Michele Solimena, Martin Weigert\ Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets\ Nat Protoc 19(5):1436–1466 (Feb 29, 2024) \ DOI: 10.1038/s41596-024-00957-5
Cara F Webster, Michael Smotherman, Martin Pippel, Thomas Brown, Sylke Winkler, Myrtani Pieri, Meike Mai, Eugene W Myers, Emma C Teeling, Sonja C Vernes, Bat1K Consortium\ The genome sequence of Tadarida brasiliensis I. Geoffroy Saint-Hilaire, 1824 [Molossidae; Tadarida]\ Wellcome Open Research 9 (Feb 29, 2024) \ DOI: 10.12688/wellcomeopenres.20603.1
Connor A. Schmidt, Eric Tambutté, Alexander A. Venn, Zhaoyong Zou, Cristina Castillo Alvarez, Laurent S. Devriendt, Hans A. Bechtel, Cayla A. Stifler, Samantha Anglemyer, Carolyn P. Breit, Connor L. Foust, Andrii Hopanchuk, Connor N. Klaus, Isaac J. Kohler, Isabelle M. LeCloux, Jaiden Mezera, Madeline R. Patton, Annie Purisch, Virginia Quach, Jaden S. Sengkhammee, Tarak Sristy, Shreya Vattem, Evan J. Walch, Marie Albéric, Yael Politi, Peter Fratzl, Sylvie Tambutté, Pupa U.P.A. Gilbert\ Myriad Mapping of nanoscale minerals reveals calcium carbonate hemihydrate in forming nacre and coral biominerals\ Nat Commun 15(1), 1812 (Feb 28, 2024) \ DOI: 10.1038/s41467-024-46117-x
Cedric Landerer, Jonas Poehls, Agnes Toth-Petroczy\ Fitness Effects of Phenotypic Mutations at Proteome-Scale Reveal Optimality of Translation Machinery\ Molecular Biology and Evolution 41(3) (Feb 27, 2024) \ DOI: 10.1093/molbev/msae048
Stefan Golfier, Thomas Quail, Jan Brugués\ Single-Molecule Approaches to Study DNA Condensation\ Castro, A., Lacroix, B. (eds) Cell Cycle Control. Methods in Molecular Biology, vol 2740. Humana, New York, NY (Feb 24, 2024) \ DOI: 10.1007/978-1-0716-3557-5_1
A. Emile J. Hendriks, M. Loredana Marcovecchio, Rachel E. J. Besser, Ezio Bonifacio, Kristina Casteels, Helena Elding Larsson, Gita Gemulla, Markus Lundgren, Olga Kordonouri, Roberto Mallone, Flemming Pociot, Agnieszka Szypowska, Jorma Toppari, Thekla von dem Berge, Anette G. Ziegler, Chantal Mathieu, Peter Achenbach\ Clinical care advice for monitoring of islet autoantibody positive individuals with presymptomatic type 1 diabetes\ Diabetes Metabolism Res 40(2) (Feb 20, 2024) \ DOI: 10.1002/dmrr.3777
Nishant Kumar, Lukas Krause, Thomas Wondrak, Sven Eckert, Kerstin Eckert, Stefan Gumhold\ Robust Reconstruction of the Void Fraction from Noisy Magnetic Flux Density Using Invertible Neural Networks\ Sensors 24(4):1213 (Feb 14, 2024) \ DOI: 10.3390/s24041213
Zahra Ghadiri, Afra Mashhadi, Marc Timme, Fakhteh Ghanbarnejad\ Recreational mobility prior and during the COVID-19 pandemic\ Communications Physics 7 (1), 55 (Feb 14, 2024) \ DOI: 10.1038/s42005-024-01535-7
Lea Happel, Axel Voigt\ Coordinated Motion of Epithelial Layers on Curved Surfaces\ Phys. Rev. Lett. 132, 078401 (Feb 13, 2024) \ DOI: 10.1103/PhysRevLett.132.078401
Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A Riegler, Manuel Wiesenfarth, A Emre Kavur, Carole H Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Tim Rädsch, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B Blaschko, M Jorge Cardoso, Veronika Cheplygina, Beth A Cimini, Gary S Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Robert Haase, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Florian Kofler, Annette Kopp-Schneider, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Peter Mattson, Erik Meijering, Bjoern Menze, Karel GM Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Nasir Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F Jäger\ Metrics reloaded: recommendations for image analysis validation\ Nature methods 21 (2) (Feb 12, 2024) \ DOI: 10.1038/s41592-023-02151-z
- (Alumni Group) Robert Haase
Nagaraja Chappidi, Thomas Quail, Simon Doll, Laura T. Vogel, Radoslav Aleksandrov, Suren Felekyan, Ralf Kühnemuth, Stoyno Stoynov, Claus A.M. Seidel, Jan Brugués, Marcus Jahnel, Titus M. Franzmann, Simon Alberti\ PARP1-DNA co-condensation drives DNA repair site assembly to prevent disjunction of broken DNA ends\ Cell 187(4):945–961.e18 (Feb 5, 2024) \ DOI: 10.1016/j.cell.2024.01.015
- Simon Alberti
- Marcus Jahnel
- Jan Brugués
Dilan Martínez-Torres, Valentina Maldonado, Cristian Pérez-Gallardo, Rodrigo Yañez, Valeria Candia, Yannis Kalaidzidis, Marino Zerial, Hernán Morales-Navarrete, Fabián Segovia-Miranda\ Phenotypic characterization of liver tissue heterogeneity through a next-generation 3D single-cell atlas\ Scientific reports 14 (1), 2823 (Feb 3, 2024) \ DOI: 10.1038/s41598-024-53309-4
Liliya Mukhametzyanova, Lukas Theo Schmitt, Julia Torres-Rivera, Teresa Rojo-Romanos, Felix Lansing, Maciej Paszkowski-Rogacz, Heike Hollak, Melanie Brux, Martina Augsburg, Paul Martin Schneider, Frank Buchholz\ Activation of recombinases at specific DNA loci by zinc-finger domain insertions\ Nat Biotechnol (online: Jan 31, 2024) \ DOI: 10.1038/s41587-023-02121-y
Erik Kalz, Hidde Derk Vuijk, Jens-Uwe Sommer, Ralf Metzler, Abhinav Sharma\ Oscillatory Force Autocorrelations in Equilibrium Odd-Diffusive Systems\ Phys. Rev. Lett. 132(5), 057102 (Jan 31, 2024) \ DOI: 10.1103/physrevlett.132.057102
Tijue Wang, Jakob Dremel, Sven Richter, Witold Polanski, Ortrud Uckermann, Ilker Eyüpoglu, Jürgen W. Czarske, Robert Kuschmierz\ Resolution-enhanced multi-core fiber imaging learned on a digital twin for cancer diagnosis\ Neurophoton. 11(S1) S11505 (Jan 31, 2024) \ DOI: 10.1117/1.nph.11.s1.s11505
Kathrin Schmeisser, Damla Kaptan, Bharath Kumar Raghuraman, Andrej Shevchenko, Jonathan Rodenfels, Sider Penkov, Teymuras V. Kurzchalia\ Mobilization of cholesterol induces the transition from quiescence to growth in Caenorhabditis elegans through steroid hormone and mTOR signaling\ Commun Biol 7(1), 121 (Jan 24, 2024) \ DOI: 10.1038/s42003-024-05804-7
K. Yanín Guerra Santillán, Christian Dahmann, Elisabeth Fischer-Friedrich\ Elastic Contractile Stress in the Basement Membrane Generates Basal Tension in Epithelia\ PRX Life 2, 013004 (Jan 23, 2024) \ DOI: 10.1103/PRXLife.2.013004
Michael Nestler, Simon Praetorius, Zhi-Feng Huang, Hartmut Löwen, Axel Voigt\ Active smectics on a sphere\ J. Phys.: Condens. Matter 36(18):185001 (Jan 23, 2024) \ DOI: 10.1088/1361-648x/ad21a7
Richard Nauber, Lars Büttner, Jürgen Czarske\ Special Issue on Computational Ultrasound Imaging and Applications\ Applied Sciences 14(3):964 (Jan 23, 2024) \ DOI: 10.3390/app14030964
Alexandra Meliou, Sourav Bhowmick, Karl Aberer, Divy Agrawal, Angela Bonifati, Vanessa Braganholo, Floris Geerts, Wolfgang Lehner, Divesh Srivastava\ Peer-Reviewing Processes and Incentives: Data Management Community Survey Results\ SIGMOD Rec. 52(4):41–46 (Jan 20, 2024) \ DOI: 10.1145/3641832.3641844
Priyanka Bhatia, Marc Bickle, Amay A. Agrawal, Buster Truss, Aikaterina Nikolaidi, Kathrin Brockmann, Lydia Reinhardt, Stefanie Vogel, Eva M. Szegoe, Arun Pal, Andreas Hermann, Ivan Mikicic, Maximina Yun, Björn Falkenburger, Jared Sterneckert\ Axonal Lysosomal Assays for Characterizing the Effects of LRRK2 G2019S\ Biology (Basel) 13(1):58 (Jan 20, 2024) \ DOI: 10.3390/biology13010058
Yongfeng Zhao, Christina Kurzthaler, Nan Zhou, Jana Schwarz-Linek, Clemence Devailly, Jochen Arlt, Jian-Dong Huang, Wilson CK Poon, Thomas Franosch, Vincent A Martinez, Julien Tailleur\ Quantitative characterization of run-and-tumble statistics in bulk bacterial suspensions\ Physical Review E 109 (1), 014612 (Jan 19, 2024) \ DOI: 10.1103/PhysRevE.109.014612
Christina Kurzthaler, Yongfeng Zhao, Nan Zhou, Jana Schwarz-Linek, Clemence Devailly, Jochen Arlt, Jian-Dong Huang, Wilson CK Poon, Thomas Franosch, Julien Tailleur, Vincent A Martinez\ Characterization and Control of the Run-and-Tumble Dynamics of Escherichia Coli\ Physical Review Letters 132 (3), 038302 (Jan 19, 2024) \ DOI: 10.1103/PhysRevLett.132.038302
Angela L. Caipa Garcia, Jill E. Kucab, Halh Al-Serori, Rebekah S. S. Beck, Madjda Bellamri, Robert J. Turesky, John D. Groopman, Hayley E. Francies, Mathew J. Garnett, Meritxell Huch, Jarno Drost, Matthias Zilbauer, Volker M. Arlt, David H. Phillips\ Tissue Organoid Cultures Metabolize Dietary Carcinogens Proficiently and Are Effective Models for DNA Adduct Formation\ Chem. Res. Toxicol. 37(2):234–247 (Jan 17, 2024) \ DOI: 10.1021/acs.chemrestox.3c00255
Marietta Döring, Melanie Brux, Maciej Paszkowski-Rogacz, Pedro M Guillem-Gloria, Frank Buchholz, M Teresa Pisabarro, Mirko Theis\ Nucleolar protein TAAP1/C22orf46confers pro-survival signaling in non-small cell lung cancer\ Life Sci. Alliance 7(4):e202302257 (Jan 16, 2024) \ DOI: 10.26508/lsa.202302257
Francine Kolley, Clara Sidor, Benoit Dehapiot, Frank Schnorrer, Benjamin M. Friedrich\ Mechanisms of Sarcomere Assembly in Muscle Cells Inferred from Sequential Ordering of Myofibril Components\ PRX Life 2(1), 013002 (Jan 11, 2024) \ DOI: 10.1103/PRXLife.2.013002
Aaron D. Wolfe, John N. Koberstein, Chadwick B. Smith, Melissa L. Stewart, Ian J. Gonzalez, Marc Hammarlund, Anthony A. Hyman, Philip J. S. Stork, Richard H. Goodman, Daniel A. Colón-Ramos\ Local and dynamic regulation of neuronal glycolysis in vivo\ Proc. Natl. Acad. Sci. U.S.A. 121(3) (Jan 10, 2024) \ DOI: 10.1073/pnas.2314699121
Jorge Lázaro, Jaroslaw Sochacki, Miki Ebisuya\ The stem cell zoo for comparative studies of developmental tempo\ Current Opinion in Genetics & Development 84:102149 (Jan 9, 2024) \ DOI: 10.1016/j.gde.2023.102149
Jiawei Sun, Bin Zhao, Dong Wang, Zhigang Wang, Jie Zhang, Nektarios Koukourakis, Júergen W. Czarske, Xuelong Li\ Calibration-free quantitative phase imaging in multi-core fiber endoscopes using end-to-end deep learning\ Opt. Lett. 49(2):342 (Jan 5, 2024) \ DOI: 10.1364/ol.509772
Shayan Vazirieh Lenjani, Cheng-Wu Li, Sezer Seçkin, Tobias AF König, Holger Merlitz, Jens-Uwe Sommer, Christian Rossner\ Kinetically Controlled Site-Specific Self-assembly of Hairy Colloids\ Langmuir 40 (5), 2487-2499 (Jan 5, 2024) \ DOI: 10.1021/acs.langmuir.3c02207
Laura K. Wiley, Jonathan A. Shortt, Emily R. Roberts, Jan Lowery, Elizabeth Kudron, Meng Lin, David Mayer, Melissa Wilson, Tonya M. Brunetti, Sameer Chavan, Tzu L. Phang, Nikita Pozdeyev, Joseph Lesny, Stephen J. Wicks, Ethan T. Moore, Joshua L. Morgenstern, Alanna N. Roff, Elise L. Shalowitz, Adrian Stewart, Cole Williams, Michelle N. Edelmann, Madelyne Hull, J. Tacker Patton, Lisen Axell, Lisa Ku, Yee Ming Lee, Jean Jirikowic, Anna Tanaka, Emily Todd, Sarah White, Brett Peterson, Emily Hearst, Richard Zane, Casey S. Greene, Rasika Mathias, Marilyn Coors, Matthew Taylor, Debashis Ghosh, Michael G. Kahn, Ian M. Brooks, Christina L. Aquilante, David Kao, Nicholas Rafaels, Kristy R. Crooks, Steve Hess, Kathleen C. Barnes, Christopher R. Gignoux\ Building a vertically integrated genomic learning health system: The biobank at the Colorado Center for Personalized Medicine\ The American Journal of Human Genetics 111(1):11–23 (Jan 4, 2024) \ DOI: 10.1016/j.ajhg.2023.12.001
Jiawei Sun, Bin Yang, Nektarios Koukourakis, Jochen Guck, Juergen W. Czarske\ AI-driven projection tomography with multicore fibre-optic cell rotation\ Nat Commun 15(1), 147 (Jan 2, 2024) \ DOI: 10.1038/s41467-023-44280-1
Marek Uvizl, Sebastien J Puechmaille, Sarahjane Power, Martin Pippel, Samuel Carthy, Wilfried Haerty, Eugene W Myers, Emma C Teeling, Zixia Huang\ Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals\ Molecular biology and evolution 41 (1), msad278 (Jan 2024) \ DOI: 10.1093/molbev/msad278
2023
250 publication(s) listed
Dennis Pohle, Fabio A. Barbosa, Filipe M. Ferreira, Stefan Rothe, Juergen W Czarske\ Digital few-mode fiber multiplexer using multiplane light conversion\ 2023 IEEE Photonics Conference (IPC) (Dec 25, 2023) \ DOI: 10.1109/ipc57732.2023.10360545
Qian Zhang, Yuan Sui, Stefan Rothe, Jürgen Czarske\ Physics-informed mode decomposition neural network for structured light in multimode fibers\ 2023 IEEE Photonics Conference (IPC) (Dec 25, 2023) \ DOI: 10.1109/ipc57732.2023.10360643
T.‐Y. Dora Tang, Xin Huang\ Artificial Cells: From Basic Assembly to Directed Functionality\ Small Methods 7(12) (Dec 23, 2023) \ DOI: 10.1002/smtd.202301446
Elena Bachini, Veit Krause, Ingo Nitschke, Axel Voigt\ Derivation and simulation of a two-phase fluid deformable surface model\ Journal of Fluid Mechanics 977:A41 (Dec 21, 2023) \ DOI: 10.1017/jfm.2023.943
Romina Piscitello-Gómez, Franz S Gruber, Abhijeet Krishna, Charlie Duclut, Carl D Modes, Marko Popović, Frank Jülicher, Natalie A Dye, Suzanne Eaton\ Core PCP mutations affect short-time mechanical properties but not tissue morphogenesis in the Drosophila pupal wing\ eLife 12:e85581 (Dec 20, 2023) \ DOI: 10.7554/eLife.85581
Piotr Surówka, Anton Souslov, Frank Jülicher, Debarghya Banerjee\ Odd Cosserat Elasticity in Active Materials\ Phys. Rev. E 108, 064609 (Dec 15, 2023) \ DOI: 10.1103/PhysRevE.108.064609
Abhinav Singh, Ivo F. Sbalzarini, Anas Obeidat\ Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics\ Computers & Fluids 267, 106074 (Dec 15, 2023) \ DOI: 10.1016/j.compfluid.2023.106074
Katarzyna P. Adamala, Marileen Dogterom, Yuval Elani, Petra Schwille, Masahiro Takinoue, T-Y Dora Tang\ Present and future of synthetic cell development\ Nat Rev Mol Cell Biol 25(3):162–167 (Dec 15, 2023) \ DOI: 10.1038/s41580-023-00686-9
Jonathan Bauermann, Giacomo Bartolucci, Job Boekhoven, Christoph A. Weber, Frank Jülicher\ Formation of Liquid Shells in Active Droplet systems\ Phys. Rev. Research 5, 043246 (Dec 14, 2023) \ DOI: 10.1103/PhysRevResearch.5.043246
Adrian Pascal Nievergelt, Dennis Ray Diener, Aliona Bogdanova, Thomas Brown, Gaia Pigino\ Protocol for precision editing of endogenous Chlamydomonas reinhardtii genes with CRISPR-Cas\ STAR Protocols 5(1):102774 (Dec 13, 2023) \ DOI: 10.1016/j.xpro.2023.102774
Dennis Pohle, Fabio A. Barbosa, Filipe M. Ferreira, Stefan Rothe, Juergen W Czarske\ Smart few-mode fiber multiplexer using multiplane light conversion\ Frontiers in Optics + Laser Science 2023 (FiO, LS) (Dec 11, 2023) \ DOI: 10.1364/fio.2023.fm1c.3
Qian Zhang, Yuan Sui, Stefan Rothe, Jürgen W. Czarske\ Learning to demultiplex the superposition of spatial modes in multimode fiber using physics-informed deep learning\ Frontiers in Optics + Laser Science 2023 (FiO, LS) (Dec 11, 2023) \ DOI: 10.1364/fio.2023.ftu1d.3
Tommaso Bianucci, Christoph Zechner\ A local polynomial moment approximation for compartmentalized biochemical systems\ Math Biosci 367:109110 (Dec 8, 2023) \ DOI: 10.1016/j.mbs.2023.109110
Xavier Trepat, Ricard Alert\ How to bridge the gap between theory and experiments in biological physics\ Nat. Phys. 19(12):1738–1739 (Dec 8, 2023) \ DOI: 10.1038/s41567-023-02276-0
Lars Büttner, Zeyu Gao, Ping Yang, Clemens Bilsing, Jürgen Czarske\ Distortion Correction for Imaging Using a Wavefront Sensing Based Multiple-Input Deep Neural Network\ Optica Imaging Congress (3D, COSI, DH, FLatOptics, IS, pcAOP) (Nov 29, 2023) \ DOI: 10.1364/cosi.2023.ctu3b.4
Elias Scharf, Ronja Stephan, Kinga Zolnacz, Michael Steinke, Robert Kuschmierz, Juergen Czarske\ Lensless Single-Shot Endoscopy with Needle-Thin Multicore Fiber Bundles enabled by 2PP 3D Printing on the Fiber Tip\ Optica Imaging Congress (3D, COSI, DH, FLatOptics, IS, pcAOP) (Nov 29, 2023) \ DOI: 10.1364/isa.2023.im3e.2
Josefine Metzkes-Ng, Florian-Emanuel Brack, Florian Kroll, Constantin Bernert, Stefan Bock, Elisabeth Bodenstein, Michael Brand, Thomas E. Cowan, René Gebhardt, Stefan Hans, Uwe Helbig, Felix Horst, Jeannette Jansen, Stephan D. Kraft, Mechthild Krause, Elisabeth Leßmann, Steffen Löck, Jörg Pawelke, Thomas Püschel, Marvin Reimold, Martin Rehwald, Christian Richter, Hans-Peter Schlenvoigt, Ulrich Schramm, Michael Schürer, Joao Seco, Emília Rita Szabó, Marvin E. P. Umlandt, Karl Zeil, Tim Ziegler, Elke Beyreuther\ The DRESDEN PLATFORM is a research hub for ultra-high dose rate radiobiology\ Sci Rep 13(1):20611 (Nov 23, 2023) \ DOI: 10.1038/s41598-023-46873-8
Joseph L. Watson, Estere Seinkmane, Christine T. Styles, Andrei Mihut, Lara K. Krüger, Kerrie E. McNally, Vicente Jose Planelles-Herrero, Michal Dudek, Patrick M. McCall, Silvia Barbiero, Michael Vanden Oever, Sew Yeu Peak-Chew, Benjamin T. Porebski, Aiwei Zeng, Nina M. Rzechorzek, David C. S. Wong, Andrew D. Beale, Alessandra Stangherlin, Margot Riggi, Janet Iwasa, Jörg Morf, Christos Miliotis, Alina Guna, Alison J. Inglis, Jan Brugués, Rebecca M. Voorhees, Joseph E. Chambers, Qing-Jun Meng, John S. O’Neill, Rachel S. Edgar, Emmanuel Derivery\ Macromolecular condensation buffers intracellular water potential\ Nature 623, 842–852 (Nov 23, 2023) \ DOI: 10.1038/s41586-023-06626-z
Massimo Mancone, Aldo J. Vázquez Mézquita, Lucia Ilaria Birtolo, Pal Maurovich-Horvat, Klaus F. Kofoed, Theodora Benedek, Patrick Donnelly, Jose Rodriguez-Palomares, Andrejs Erglis, Cyril Štěchovský, Gintare Šakalytė, Nada Čemerlić Ađić, Matthias Gutberlet, Ignacio Diez, Gershan Davis, Elke Zimmermann, Cezary Kępka, Radosav Vidakovic, Marco Francone, Małgorzata Ilnicka-Suckiel, Fabian Plank, Juhanni Knuuti, Rita Faria, Stephen Schröder, Colin Berry, Luca Saba, Balazs Ruzsics, Nina Rieckmann, Christine Kubiak, Kristian Schultz Hansen, Jaqueline Müller-Nordhorn, Bela Merkely, Per E. Sigvardsen, Imre Benedek, Clare Orr, Filipa Xavier Valente, Ligita Zvaigzne, Vojtěch Suchánek, Antanas Jankauskas, Filip Ađić, Michael Woinke, Stephen Keane, Ignacio Lecumberri, Erica Thwaite, Mariusz Kruk, Vladimir Jovanovic, Donata Kuśmierz, Gudren Feuchtner, Mikko Pietilä, Vasco Gama Ribeiro, Tanja Drosch, Christian Delles, Vitanio Palmisano, Michael Fisher, Zsófia D. Drobni, Charlotte Kragelund, Rosca Aurelian, Stephanie Kelly, Bruno Garcia del Blanco, Ainhoa Rubio, Melinda Boussoussou, Jens D. Hove, Ioana Rodean, Susan Regan, Hug Cuéllar Calabria, Dávid Becker, Linnea Larsen, Roxana Hodas, Adriane E. Napp, Robert Haase, Sarah Feger, Mahmoud Mohamed, Konrad Neumann, Henryk Dreger, Matthias Rief, Viktoria Wieske, Pamela S. Douglas, Melanie Estrella, Maria Bosserdt, Peter Martus, Lina M. Serna-Higuita, Jonathan D. Dodd, Marc Dewey\ Impact of smoking in patients with suspected coronary artery disease in the randomised DISCHARGE trial\ Eur Radiol 34(6):4127–4141 (Nov 22, 2023) \ DOI: 10.1007/s00330-023-10355-2
- (Alumni Group) Robert Haase
Laura Celotto, Fabian Rost, Anja Machate, Juliane Bläsche, Andreas Dahl, Anke Weber, Stefan Hans, Michael Brand\ Single-cell RNA sequencing unravels the transcriptional network underlying zebrafish retina regeneration\ eLife 12:RP86507 (Nov 21, 2023) \ DOI: 10.7554/eLife.86507.3
Ashwin I. D’Souza, Rahul Grover, Gina A. Monzon, Ludger Santen, Stefan Diez\ Vesicles driven by dynein and kinesin exhibit directional reversals without regulators\ Nat Commun 14, 7532 (Nov 20, 2023) \ DOI: 10.1038/s41467-023-42605-8
Qinghao Yu, Hannah E Walters, Giovanni Pasquini, Sumeet Pal Singh, Martina Lachnit, Catarina R Oliveira, Daniel León-Periñán, Andreas Petzold, Preethi Kesavan, Cristina Subiran Adrados, Ines Garteizgogeascoa, Dunja Knapp, Anne Wagner, Andrea Bernardos, María Alfonso, Gayathri Nadar, Alwin M Graf, Konstantin E Troyanovskiy, Andreas Dahl, Volker Busskamp, Ramón Martínez-Máñez, Maximina H Yun\ Cellular senescence promotes progenitor cell expansion during axolotl limb regeneration\ Dev Cell 58(22):2416-2427.e7 (Nov 20, 2023) \ DOI: 10.1016/j.devcel.2023.09.009
Lucas Woltmann, Jonas Deepe, Claudio Hartmann, Wolfgang Lehner\ evalPM: a framework for evaluating machine learning models for particulate matter prediction\ Environ Monit Assess 195(12), 1491 (Nov 18, 2023) \ DOI: 10.1007/s10661-023-11996-y
Archit Bhatnagar, Michael Nestler, Peter Gross, Mirna Kramar, Mark Leaver, Axel Voigt, Stephan W. Grill\ Axis convergence in C. elegans embryos\ Current Biology 33, 1–13 (Nov 17, 2023) \ DOI: 10.1016/j.cub.2023.10.050
David T Gonzales, Milena Schuhmacher, H Mathilda Lennartz, Juan M Iglesias-Artola, Sascha M Kuhn, Pavel Barahtjan, Christoph Zechner, André Nadler\ Quantifying single-cell diacylglycerol signaling kinetics after uncaging\ Biophysical journal 122 (24), 4699-4709 (online: Nov 16, 2023) \ DOI: 10.1016/j.bpj.2023.11.013
Zehua Dou, Laura Tropf, Harry Hoster, Hagen Schmidt, Juergen Czarske, David Weik\ Advanced Ultrasonic Diagnostic Technology Towards Green Hydrogen Energy Systems\ 2023 IEEE International Ultrasonics Symposium (IUS) (Nov 7, 2023) \ DOI: 10.1109/ius51837.2023.10307141
Lukas Theo Schmitt, Aksana Schneider, Jonas Posorski, Felix Lansing, Milica Jelicic, Manavi Jain, Shady Sayed, Frank Buchholz, Duran Sürün\ Quantification of evolved DNA-editing enzymes at scale with DEQSeq\ Genome Biol 24(1), 254 (Nov 6, 2023) \ DOI: 10.1186/s13059-023-03097-3
Mengfei Gao, Dishi Wang, Michaela Wilsch‐Bräuninger, Weihua Leng, Jonathan Schulte, Nina Morgner, Dietmar Appelhans, T‐Y. Dora Tang\ Cell Free Expression in Proteinosomes Prepared from Native Protein‐PNIPAAm Conjugates\ Macromolecular Bioscience 24(3) (Nov 5, 2023) \ DOI: 10.1002/mabi.202300464
Zehua Dou, Bowen Fang, Laura Tropf, Harry Hoster, Hagen Schmidt, Jürgen Czarske, David Weik\ A Water Monitoring System for Proton Exchange Membrane Fuel Cells Based on Ultrasonic Lamb Waves: An Ex Situ Proof of Concept\ IEEE Trans. Instrum. Meas. 72:1–12 (Nov 3, 2023) \ DOI: 10.1109/tim.2023.3329101
Antoine Vian, Marie Pochitaloff, Shuo-Ting Yen, Sangwoo Kim, Jennifer Pollock, Yucen Liu, Ellen M. Sletten, Otger Campàs*\ In situ quantification of osmotic pressure within living embryonic tissues\ Nat Commun 14(1), 7023 (Nov 2, 2023) \ * corresponding author \ DOI: 10.1038/s41467-023-42024-9
Aboutaleb Amiri, Charlie Duclut, Frank Jülicher, Marko Popović\ Random Traction Yielding Transition in Epithelial Tissues\ Phys. Rev. Lett. 131, 188401 (Oct 30, 2023) \ DOI: 10.1103/PhysRevLett.131.188401
Max Korn, Julián Méndez, Sascha Klüppelholz, Ricardo Langner, Christel Baier, Raimund Dachselt\ PMC-VIS: An Interactive Visualization Tool for Probabilistic Model Checking\ Lecture Notes in Computer Science 361–375 (Oct 30, 2023) \ DOI: 10.1007/978-3-031-47115-5_20
Zheng Shen, Daxiao Sun, Adriana Savastano, Sára Joana Varga, Maria-Sol Cima-Omori, Stefan Becker, Alf Honigmann, Markus Zweckstetter\ Multivalent Tau/PSD-95 interactions arrest in vitro condensates and clusters mimicking the postsynaptic density\ Nat Commun 14(1), 6839 (Oct 27, 2023) \ DOI: 10.1038/s41467-023-42295-2
Dennis Schifferl, Manuela Scholze-Wittler, Alba Villaronga Luque, Milena Pustet, Lars Wittler, Jesse V. Veenvliet, Frederic Koch, Bernhard G. Herrmann\ Genome-wide identification of notochord enhancers comprising the regulatory landscape of the brachyury locus in mouse\ Development 150(22) (Oct 26, 2023) \ DOI: 10.1242/dev.202111
Cheng-Wu Li, Holger Merlitz, Jens-Uwe Sommer\ Scaling Behaviors of Nanoparticle Clusters That Are Driven through Brush-Decorated Nanopores\ Macromolecules 56(21):8710–8720 (Oct 25, 2023) \ DOI: 10.1021/acs.macromol.3c01762
Shivraj B. Kotkar, Michael P. Howard, Arash Nikoubashman, Jacinta C. Conrad, Ryan Poling-Skutvik, Jeremy C. Palmer\ Confined Dynamics in Spherical Polymer Brushes\ ACS Macro Lett. 12(11):1503–1509 (Oct 25, 2023) \ DOI: 10.1021/acsmacrolett.3c00505
Elisabeth Knust\ Der Crumbs-Komplex – von Epithelpolarität zu retinaler Degeneration\ Biospektrum 29(6):574–577 (Oct 19, 2023) \ DOI: 10.1007/s12268-023-2038-0
Ashley T. Sendell-Price, Frank J. Tulenko, Mats Pettersson, Du Kang, Margo Montandon, Sylke Winkler, Kathleen Kulb, Gavin P. Naylor, Adam Phillippy, Olivier Fedrigo, Jacquelyn Mountcastle, Jennifer R. Balacco, Amalia Dutra, Rebecca E. Dale, Bettina Haase, Erich D. Jarvis, Gene Myers, Shawn M. Burgess, Peter D. Currie, Leif Andersson, Manfred Schartl\ Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks\ Nat Commun 14(1), 6628 (Oct 19, 2023) \ DOI: 10.1038/s41467-023-42238-x
Jiahui Wang, Dinesh Sundaravadivelu Devarajan, Arash Nikoubashman, Jeetain Mittal\ Conformational Properties of Polymers at Droplet Interfaces as Model Systems for Disordered Proteins\ ACS Macro Letters, Vol 12/Issue 11 (Oct 19, 2023) \ DOI: 10.1021/acsmacrolett.3c00456
Nils Kröger, Marc Gentzel\ Wie man ein Glashaus baut: die außergewöhnlichen Proteine der Kieselalgen\ Biospektrum 29, 621–624 (Oct 19, 2023) \ DOI: 10.1007/s12268-023-2031-7
Tom Glosemeyer, Julian Lich, Robert Kuschmierz, Jürgen Czarske\ Diffuser-based fiber endoscopy for single-shot 3D fluorescence imaging\ EPJ Web Conf. 287:03013 (Oct 18, 2023) \ DOI: 10.1051/epjconf/202328703013
Cassie L. Kemmler, Jana Smolikova, Hannah R. Moran, Brandon J. Mannion, Dunja Knapp, Fabian Lim, Anna Czarkwiani, Viviana Hermosilla Aguayo, Vincent Rapp, Olivia E. Fitch, Seraina Bötschi, Licia Selleri, Emma Farley, Ingo Braasch, Maximina Yun, Axel Visel, Marco Osterwalder, Christian Mosimann, Zbynek Kozmik, Alexa Burger\ Conserved enhancers control notochord expression of vertebrate Brachyury\ Nat Commun 14(1):6594 (Oct 18, 2023) \ DOI: 10.1038/s41467-023-42151-3
Alexander M. Bergmann, Jonathan Bauermann, Giacomo Bartolucci, Carsten Donau, Michele Stasi, Anna-Lena Holtmannspötter, Frank Jülicher, Christoph A. Weber, Job Boekhoven\ Liquid spherical shells are a non-equilibrium steady state of active droplets\ Nat Commun 14(1), 6552 (Oct 17, 2023) \ DOI: 10.1038/s41467-023-42344-w
Andreas Hartmann, Koushik Sreenivasa, Mathias Schenkel, Neharika Chamachi, Philipp Schake, Georg Krainer, Michael Schlierf\ An automated single-molecule FRET platform for high-content, multiwell plate screening of biomolecular conformations and dynamics\ Nat Commun 14, 6511 (Oct 16, 2023) \ DOI: 10.1038/s41467-023-42232-3
Mahmoud Mohamed, Maria Bosserdt, Viktoria Wieske, Benjamin Dubourg, Hatem Alkadhi, Mario J. Garcia, Sebastian Leschka, Elke Zimmermann, Abbas A. Shabestari, Bjarne L. Nørgaard, Matthijs F. L. Meijs, Kristian A. Øvrehus, Axel C. P. Diederichsen, Juhani Knuuti, Bjørn A. Halvorsen, Vladymir Mendoza-Rodriguez, Yung-Liang Wan, Nuno Bettencourt, Eugenio Martuscelli, Ronny R. Buechel, Hans Mickley, Kai Sun, Simone Muraglia, Philipp A. Kaufmann, Bernhard A. Herzog, Jean-Claude Tardif, Georg M. Schütz, Michael Laule, David E. Newby, Stephan Achenbach, Matthew Budoff, Robert Haase, Federico Biavati, Aldo Vásquez Mézquita, Peter Schlattmann, Marc Dewey\ Combination of computed tomography angiography with coronary artery calcium score for improved diagnosis of coronary artery disease: a collaborative meta-analysis of stable chest pain patients referred for invasive coronary angiography\ Eur Radiol 34(4):2426–2436 (Oct 13, 2023) \ DOI: 10.1007/s00330-023-10223-z
- (Alumni Group) Robert Haase
Ping Liu, Nils Schumann, Fabian Abele, Fazheng Ren, Marcel Hanke, Yang Xin, Andreas Hartmann, Michael Schlierf, Adrian Keller, Weilin Lin*, Yixin Zhang*\ Thermophoretic Analysis of Biomolecules across the Nanoscales in Self-Assembled Polymeric Matrices\ ACS Appl. Nano Mater (Oct 10, 2023) \ * corresponding authors \ DOI: 10.1021/acsanm.3c03623
Andreas Geyer, Johannes Pietrzyk, Alexander Krause, Dirk Habich, Wolfgang Lehner, Christian Färber, Thomas Willhalm\ Near to Far: An Evaluation of Disaggregated Memory for In-Memory Data Processing\ Proceedings of the 1st Workshop on Disruptive Memory Systems (Oct 10, 2023) \ DOI: 10.1145/3609308.3625271
Qian Zhang, Yuan Sui, Dennis Pohle, Nektarios Koukourakis, Jürgen W. Czarske, Stefan Rothe\ Reference-less phase retrieval of multimode fibers using a deep neural network\ Emerging Topics in Artificial Intelligence (ETAI) 2023 (Oct 5, 2023) \ DOI: 10.1117/12.2674072
Jiawei Sun, Nektarios Koukourakis, Juergen W. Czarske\ 3D cell rotation in multicore fiber-based optical diffraction tomography with isotropic resolution using deep learning\ Optical Trapping and Optical Micromanipulation XX (Oct 5, 2023) \ DOI: 10.1117/12.2676123
Rohit Krishnan Harish, Mansi Gupta, Daniela Zöller, Hella Hartmann, Ali Gheisari, Anja Machate, Stefan Hans, Michael Brand\ Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation\ Development 150(19):dev201559 (Oct 3, 2023) \ DOI: 10.1242/dev.201559
Clemens Bilsing, Lars Büttner, Sebastian Burgmann, Jürgen W. Czarske\ High-speed 3D particle tracking with dynamic aberration correction using a Fresnel guide star\ Unconventional Imaging, Sensing, and Adaptive Optics 2023 (Oct 3, 2023) \ DOI: 10.1117/12.2675483
Abhinav Singh, Philipp H. Suhrcke, Pietro Incardona, Ivo F. Sbalzarini\ A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence\ Physics of Fluids 35(10):105155 (Oct 1, 2023) \ DOI: 10.1063/5.0169546
Thomas Pinetz, Erich Kobler, Robert Haase, Katerina Deike-Hofmann, Alexander Radbruch, Alexander Effland\ Faithful Synthesis of Low-Dose Contrast-Enhanced Brain MRI Scans Using Noise-Preserving Conditional GANs\ Lecture Notes in Computer Science 607–617 (Sep 30, 2023) \ DOI: 10.1007/978-3-031-43895-0_57
- (Alumni Group) Robert Haase
Jaime A. Espina, Marilia H. Cordeiro, Elias H. Barriga\ Tissue interplay during morphogenesis\ Seminars in Cell and Developmental Biology 147:12–23 (Sep 30, 2023) \ DOI: 10.1016/j.semcdb.2023.03.010
Fang-Chu Lin, Heidi L. van de Wouw, Otger Campàs, Ellen M. Sletten, Jeffrey I. Zink*\ Synthesis of Fluorous Ferrofluids and Effects of the Nanoparticle Coatings on Field- and Temperature-Dependent Magnetizations\ Chem. Mater. 35(19):7957–7966 (Sep 29, 2023) \ * corresponding author \ DOI: 10.1021/acs.chemmater.3c01172
Katharina Schmidt, Ning Guo, Wenjie Wang, Juergen W. Czarske, Nektarios Koukourakis\ Chromatic aberration correction using reinforcement learning\ Emerging Topics in Artificial Intelligence (ETAI) 2023 (Sep 28, 2023) \ DOI: 10.1117/12.2675887
Tijue Wang, Jakob Dremel, Jiachen Wu, Ortrud Uckermann, Roberta Galli, Ilker Eyüpoglu, Jürgen W. Czarske, Robert Kuschmierz\ Learning-based lensless fiber bundle imaging with real-time resolution enhancement for biomedicine\ Emerging Topics in Artificial Intelligence (ETAI) 2023 (Sep 28, 2023) \ DOI: 10.1117/12.2675989
Nektarios Koukourakis, Jiawei Sun, Jürgen W. Czarske\ Optical diffraction tomography based on AI-driven adaptive optical cell-rotation\ Emerging Topics in Artificial Intelligence (ETAI) 2023 (Sep 28, 2023) \ DOI: 10.1117/12.2678217
Guoming Gao, Emily S. Sumrall, Sethuramasundaram Pitchiaya, Markus Bitzer, Simon Alberti, Nils G. Walter\ Biomolecular condensates in kidney physiology and disease\ Nat Rev Nephrol 19(12):756–770 (Sep 26, 2023) \ DOI: 10.1038/s41581-023-00767-0
Arvid Sandforth, Reiner Jumpertz von Schwartzenberg, Elsa Vazquez Arreola, Robert L Hanson, Gencer Sancar, Sarah Katzenstein, Karl Lange, Hubert Preißl, Simon I Dreher, Cora Weigert, Robert Wagner, Kostantinos Kantartzis, Jürgen Machann, Fritz Schick, Rainer Lehmann, Andreas Peter, Nikoletta Katsouli, Vasilis Ntziachristos, Corinna Dannecker, Louise Fritsche, Nikolaos Perakakis, Martin Heni, Peter Paul Nawroth, Stefan Kopf, Andreas F H Pfeiffer, Stefan Kabisch, Michael Stumvoll, Peter E H Schwarz, Hans Hauner, Andreas Lechner, Jochen Seissler, Iryna Yurchenko, Andrea Icks, Michele Solimena, Hans-Ulrich Häring, Julia Szendroedi, Annette Schürmann, Martin Hrabé de Angelis, Matthias Blüher, Michael Roden, Stefan R Bornstein, Norbert Stefan, Andreas Fritsche, Andreas L Birkenfeld\ Mechanisms of weight loss-induced remission in people with prediabetes: a post-hoc analysis of the randomised, controlled, multicentre Prediabetes Lifestyle Intervention Study (PLIS)\ The Lancet Diabetes & Endocrinology 11(11):798–810 (Sep 25, 2023) \ DOI: 10.1016/s2213-8587(23)00235-8
Meghali Aich, Asgar Hussain Ansari, Li Ding, Vytautas Iesmantavicius, Deepanjan Paul, Chunaram Choudhary, Souvik Maiti, Frank Buchholz, Debojyoti Chakraborty\ TOBF1 modulates mouse embryonic stem cell fate through regulating alternative splicing of pluripotency genes\ Cell Reports 42(10):113177 (Sep 25, 2023) \ DOI: 10.1016/j.celrep.2023.113177
Jaime A. Espina, Marilia H. Cordeiro, Milan Milivojevic, Ivana Pajić-Lijaković, Elias H. Barriga\ Response of cells and tissues to shear stress\ Journal of Cell Science 136(18) (Sep 25, 2023) \ DOI: 10.1242/jcs.260985
Jay Gopalakrishnan, Kerstin Feistel, Benjamin M Friedrich, Anne Grapin‐Botton, Nathalie Jurisch‐Yaksi, Elvira Mass, David U Mick, Roman‐Ulrich Müller, Helen May‐Simera, Bernhard Schermer, Miriam Schmidts, Peter Walentek, Dagmar Wachten\ Emerging principles of primary cilia dynamics in controlling tissue organization and function\ The EMBO Journal 42(21) (Sep 25, 2023) \ DOI: 10.15252/embj.2023113891
Tina Helmecke, Ilka I. Rose, Mikhail V. Tsurkan, Hannah Roth, Manfred F. Maitz, Carsten Werner, Matthias Wessling\ Poly(styrene-alt-maleic anhydride)-copolymers blended in poly(ether sulfone) membranes as a platform for effective biomolecular surface functionalization\ Journal of Membrane Science 689:122050 (Sep 23, 2023) \ DOI: 10.1016/j.memsci.2023.122050
Felix Kramer, Carl D. Modes\ Ensnarled: Topological linkage of spatially embedded network pairs\ Phys. Rev. Research 5(3), 033203 (Sep 22, 2023) \ DOI: 10.1103/physrevresearch.5.033203
Ali Tahaei, Giulio Biroli, Misaki Ozawa, Marko Popović, Matthieu Wyart\ Scaling Description of Dynamical Heterogeneity and Avalanches of Relaxation in Glass-Forming Liquids\ Phys. Rev. X 13(3), 031034 (Sep 21, 2023) \ DOI: 10.1103/physrevx.13.031034
Marcel Hanke, Daniel Dornbusch, Emilia Tomm, Guido Grundmeier, Karim Fahmy, Adrian Keller\ Superstructure-dependent stability of DNA origami nanostructures in the presence of chaotropic denaturants\ Nanoscale 15(41):16590–16600 (Sep 19, 2023) \ DOI: 10.1039/d3nr02045b
Theodora Benedek, Viktoria Wieske, Bálint Szilveszter, Klaus F. Kofoed, Patrick Donnelly, José Rodriguez-Palomares, Andrejs Erglis, Josef Veselka, Gintarė Šakalytė, Nada Čemerlić Ađić, Matthias Gutberlet, Ignacio Diez, Gershan Davis, Elke Zimmermann, Cezary Kępka, Radosav Vidakovic, Marco Francone, Małgorzata Ilnicka-Suckiel, Fabian Plank, Juhani Knuuti, Rita Faria, Stephen Schröder, Colin Berry, Luca Saba, Balazs Ruzsics, Nina Rieckmann, Christine Kubiak, Kristian Schultz Hansen, Jacqueline Müller-Nordhorn, Bela Merkely, Per E. Sigvardsen, Imre Benedek, Clare Orr, Filipa Xavier Valente, Ligita Zvaigzne, Martin Horváth, Antanas Jankauskas, Filip Ađić, Michael Woinke, Niall Mulvihill, Iñigo Lecumberri, Erica Thwaite, Michael Laule, Mariusz Kruk, Milica Stefanovic, Massimo Mancone, Donata Kuśmierz, Gudrun Feuchtner, Mikko Pietilä, Vasco Gama Ribeiro, Tanja Drosch, Christian Delles, Marco Melis, Michael Fisher, Melinda Boussoussou, Charlotte Kragelund, Rosca Aurelian, Stephanie Kelly, Bruno Garcia del Blanco, Ainhoa Rubio, Mihály Károlyi, Jens D. Hove, Ioana Rodean, Susan Regan, Hug Cuéllar Calabria, László Gellér, Linnea Larsen, Roxana Hodas, Adriane E. Napp, Robert Haase, Sarah Feger, Mahmoud Mohamed, Lina M. Serna-Higuita, Konrad Neumann, Henryk Dreger, Matthias Rief, John Danesh, Melanie Estrella, Maria Bosserdt, Peter Martus, Jonathan D. Dodd, Marc Dewey\ Computed Tomography Versus Invasive Coronary Angiography in Patients With Diabetes and Suspected Coronary Artery Disease\ Diabetes Care 46(11):2015–2023 (Sep 19, 2023) \ DOI: 10.2337/dc23-0710
- (Alumni Group) Robert Haase
Veit Krause, Eric Kunze, Axel Voigt\ A surface finite element method for the Navier–Stokes equations on evolving surfaces\ Proc Appl Math and Mech 23(3) (Sep 12, 2023) \ DOI: 10.1002/pamm.202300014
Michael Nestler, Axel Voigt\ Stability of rotating equilibrium states of fluid deformable surfaces\ Proc Appl Math and Mech 23(3) (Sep 12, 2023) \ DOI: 10.1002/pamm.202300044
Castillo Bautista, Cristina Marisol, Kristin Eismann, Marc Gentzel, Silvia Pelucchi, Jerome Mertens, Hannah E. Walters, Maximina H. Yun, Jared Sterneckert\ Obatoclax Rescues FUS-ALS Phenotypes in iPSC-Derived Neurons by Inducing Autophagy\ Cells;12(18):2247 (Sep 11, 2023) \ DOI: 10.3390/cells12182247
Ranajay Datta, Fabian Berressem, Friederike Schmid, Arash Nikoubashman, Peter Virnau\ Viscosity of Flexible and Semiflexible Ring Melts: Molecular Origins and Flow-Induced Segregation\ Macromolecules 56(18):7247–7255 (Sep 7, 2023) \ DOI: 10.1021/acs.macromol.3c01046
Xingyu Zhang, Sider Penkov, Teymuras V. Kurzchalia, Vasily Zaburdaev\ Periodic ethanol supply as a path toward unlimited lifespan of Caenorhabditis elegans dauer larvae\ Front. Aging 4 (Sep 5, 2023) \ DOI: 10.3389/fragi.2023.1031161
Nikolai Klena, Giovanni Maltinti, Umut Batman, Gaia Pigino, Paul Guichard, Virginie Hamel\ An In-depth Guide to the Ultrastructural Expansion Microscopy (U-ExM) of Chlamydomonas reinhardtii\ BIO-PROTOCOL 13(17) (Sep 4, 2023) \ DOI: 10.21769/bioprotoc.4792
Valentin Ruffine, Andreas Hartmann, Annika Frenzel, Michael Schlierf, Elisabeth Fischer-Friedrich\ Twofold Mechanosensitivity Ensures Actin Cortex Reinforcement upon Peaks in Mechanical Tension\ Adv. Physics Res, 2300046 (Sep 3, 2023) \ DOI: 10.1002/apxr.202300046
Fabio Schittler Neves, Marc Timme\ Volatile Memory Motifs: Minimal Spiking Neural Networks\ IEEE Access (online: Sep 2023) \ DOI: 10.1109/ACCESS.2023.3305277
Kamran Hosseini, Annika Frenzel, Elisabeth Fischer-Friedrich\ EMT induces characteristic changes of Rho GTPases and downstream effectors with a mitosis-specific twist\ Phys. Biol. 20(6):066001 (Aug 31, 2023) \ DOI: 10.1088/1478-3975/acf5bd
Manish Yadav, Martijn Zuiddam, Helmut Schiessel\ The role of transcript regions and amino acid choice in nucleosome positioning\ NAR Genomics and Bioinformatics 5(3) (Aug 30, 2023) \ DOI: 10.1093/nargab/lqad080
Julius Gonsior, Christian Falkenberg, Silvio Magino, Anja Reusch, Claudio Hartmann, Maik Thiele, Wolfgang Lehner\ Comparing and Improving Active Learning Uncertainty Measures for Transformer Models\ Lecture Notes in Computer Science 119–132 (Aug 27, 2023) \ DOI: 10.1007/978-3-031-42914-9_9
Lucas Woltmann, Jerome Thiessat, Claudio Hartmann, Dirk Habich, Wolfgang Lehner\ FASTgres: Making Learned Query Optimizer Hinting Effective\ Proc. VLDB Endow. 16(11):3310–3322 (Aug 25, 2023) \ DOI: 10.14778/3611479.3611528
Alexander von der Malsburg, Gracie M. Sapp, Kelly E. Zuccaro, Alexander von Appen, Frank R. Moss, Raghav Kalia, Jeremy A. Bennett, Luciano A. Abriata, Matteo Dal Peraro, Martin van der Laan, Adam Frost, Halil Aydin\ Structural mechanism of mitochondrial membrane remodelling by human OPA1\ Nature 620(7976):1101–1108 (Aug 23, 2023) \ DOI: 10.1038/s41586-023-06441-6
Adrian Pascal Nievergelt, Dennis Ray Diener, Aliona Bogdanova, Thomas Brown, Gaia Pigino\ Efficient precision editing of endogenous Chlamydomonas reinhardtii genes with CRISPR-Cas\ Cell Reports Methods 3(8):100562 (Aug 22, 2023) \ DOI: 10.1016/j.crmeth.2023.100562
Alexa Sadier, Neal Anthwal, Andrew L. Krause, Renaud Dessalles, Michael Lake, Laurent A. Bentolila, Robert Haase, Natalie A. Nieves, Sharlene E. Santana, Karen E. Sears\ Bat teeth illuminate the diversification of mammalian tooth classes\ Nat Commun 14(1), 4687 (Aug 22, 2023) \ DOI: 10.1038/s41467-023-40158-4
- (Alumni Group) Robert Haase
Wenjie Wang, Katharina Schmidt, Matthias C. Wapler, Ulrike Wallrabe, Jürgen W. Czarske, Nektarios Koukourakis\ Fully refractive telecentric f-theta microscope based on adaptive elements for 3D raster scanning of biological tissues\ Opt. Express 31(18):29703 (Aug 22, 2023) \ DOI: 10.1364/oe.496150
Georg Börner, Fabio Schittler Neves, Marc Timme\ Designing spiking neural networks for robust and reconfigurable computation\ Chaos: An Interdisciplinary Journal of Nonlinear Science 33(8) (Aug 21, 2023) \ DOI: 10.1063/5.0156447
Nils Christian Lehnen, Arndt-Hendrik Schievelkamp, Christian Gronemann, Robert Haase, Inga Krause, Max Gansen, Tobias Fleckenstein, Franziska Dorn, Alexander Radbruch, Daniel Paech\ P127/305 Impact of an AI software on the diagnostic performance of radiologists for the detection of cerebral aneurysms on time of flight MR-angiography\ Abstracts (Aug 21, 2023) \ DOI: 10.1136/jnis-2023-esmint.155
- (Alumni Group) Robert Haase
Brigitte Voit, Andreas Fery, Markus Stommel, Jens‐Uwe Sommer, Carsten Werner\ 75 years of polymer research in Dresden\ Journal of Polymer Science 61(16):1705–1706 (Aug 18, 2023) \ DOI: 10.1002/pol.20230508
Belin Selcen Beydag-Tasöz, Joyson Verner D’Costa, Lena Hersemann, Byung Ho Lee, Federica Luppino, Yung Hae Kim, Christoph Zechner, Anne Grapin-Botton\ Integrating single-cell imaging and RNA sequencing datasets links differentiation and morphogenetic dynamics of human pancreatic endocrine progenitors\ Dev Cell, 2023. 58(21):2292–2308.e6 (Aug 16, 2023) \ DOI: 10.1016/j.devcel.2023.07.019
Julian Lich, Tino Wollmann, Robert Kuschmierz, Maik Gude, Jürgen Czarske\ Optical sensor for localized damage detection and modal analysis on fast rotating fiber reinforced polymer structures\ Optical Measurement Systems for Industrial Inspection XIII (Aug 16, 2023) \ DOI: 10.1117/12.2673813
Juergen W. Czarske, Nektarios Koukourakis, Jiawei Sun\ Multicore fiber endoscopy for 3D rotation of cancer cells\ Optical Methods for Inspection, Characterization, and Imaging of Biomaterials VI (Aug 11, 2023) \ DOI: 10.1117/12.2678494
Mauricio Rocha-Martins, Elisa Nerli, Jenny Kretzschmar, Martin Weigert, Jaroslav Icha, Eugene W. Myers, Caren Norden\ Neuronal migration prevents spatial competition in retinal morphogenesis\ Nature 620(7974):615–624 (Aug 9, 2023) \ DOI: 10.1038/s41586-023-06392-y
Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini\ STENCIL-NET for equation-free forecasting from data\ Sci Rep 13, 12787 (Aug 7, 2023) \ DOI: 10.1038/s41598-023-39418-6
Justina Stark, Ivo F. Sbalzarini\ An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media\ Journal of Computational Science 72, 102118 (Aug 7, 2023) \ DOI: 10.1016/j.jocs.2023.102118
Abhinav Singh, Alejandra Foggia, Pietro Incardona, Ivo F. Sbalzarini\ A Meshfree Collocation Scheme for Surface Differential Operators on Point Clouds\ J Sci Comput 96, 89 (Aug 7, 2023) \ DOI: 10.1007/s10915-023-02313-3
Yu-Hsuan Peng, Syuan-Ku Hsiao, Krishna Gupta, André Ruland, Günter K. Auernhammer, Manfred F. Maitz, Susanne Boye, Johanna Lattner, Claudia Gerri, Alf Honigmann, Carsten Werner, Elisha Krieg\ Dynamic matrices with DNA-encoded viscoelasticity for cell and organoid culture\ Nat. Nanotechnol. 18(12):1463–1473 (Aug 7, 2023) \ DOI: 10.1038/s41565-023-01483-3
Felix Schmieder, Lars Büttner, Wouter Derks, Olaf Bergmann, Jürgen W. Czarske\ Simultaneous optogenetic stimulation and inhibition using fast ferroelectric spatial light modulators and digital holograms\ Digital Optical Technologies 2023 (Aug 7, 2023) \ DOI: 10.1117/12.2675919
Jirina Zackova Suchanova, Gust Bilcke, Beata Romanowska, Ali Fatlawi, Martin Pippel, Alastair Skeffington, Michael Schroeder, Wim Vyverman, Klaas Vandepoele, Nils Kröger, Nicole Poulsen\ Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation\ New Phytologist 240, 770–783 (Aug 7, 2023) \ DOI: 10.1111/nph.19145
Ryota Takaki, Louise Jawerth, Marko Popović, Frank Jülicher\ Theory of Rheology and Aging of Protein Condensates\ PRX Life, 1, 013006 (Aug 4, 2023) \ DOI: 10.1103/PRXLife.1.013006
Anja Reusch, Wolfgang Lehner\ Extracting Operator Trees from Model Embeddings\ Proceedings of the 1st Workshop on Mathematical Natural Language Processing (MathNLP) (Aug 4, 2023) \ DOI: 10.18653/v1/2022.mathnlp-1.6
Johannes Gürtler, Sami Tasmany, Robert Kuschmierz, Jakob Woisetschläger, Jürgen Czarske\ Neural network-based tomographic reconstruction of high-speed interferometric and Schlieren image data for density and velocity detection\ Multimodal Sensing and Artificial Intelligence: Technologies and Applications III (Aug 3, 2023) \ DOI: 10.1117/12.2673762
Sachin Krishnan Thekke Veettil, Gentian Zavalani, Uwe Hernandez Acosta, Ivo F. Sbalzarini, Michael Hecht\ Global Polynomial Level Sets for Numerical Differential Geometry of Smooth Closed Surfaces\ SIAM J. Sci. Comput. 45(4):A1995–A2018 (Aug 2, 2023) \ DOI: 10.1137/22m1536510
Ruben Lier, Charlie Duclut, Stefano Bo, Jay Armas, Frank Jülicher, Piotr Surówka\ Lift force in odd compressible fluids\ Physical Review E 108 (2), L023101 (Aug 2, 2023) \ DOI: 10.1103/PhysRevE.108.L023101
Veit Krause, Axel Voigt\ A numerical approach for fluid deformable surfaces with conserved enclosed volume\ Journal of Computational Physics, 486, 112097, (Aug 1, 2023) \ DOI: 10.1016/j.jcp.2023.112097
Carlotta Mayer, Sophie Nehring, Michael Kücken, Urska Repnik, Sarah Seifert, Aleksandra Sljukic, Julien Delpierre, Hernán Morales‐Navarrete, Sebastian Hinz, Mario Brosch, Brian Chung, Tom Karlsen, Meritxell Huch, Yannis Kalaidzidis, Lutz Brusch, Jochen Hampe, Clemens Schafmayer, Marino Zerial\ Apical bulkheads accumulate as adaptive response to impaired bile flow in liver disease\ EMBO reports 24 (9), e57181 (Jul 31, 2023) \ DOI: 10.15252/embr.202357181
Nikolaos Perakakis, Hani Harb, Benjamin G Hale, Zsuzsanna Varga, Charlotte Steenblock, Waldemar Kanczkowski, Vasileia Ismini Alexaki, Barbara Ludwig, Peter Mirtschink, Michele Solimena, Nicole Toepfner, Sebastian Zeissig, Manuel Gado, Irene Alma Abela, Felix Beuschlein, Giatgen A Spinas, Claudia Cavelti-Weder, Philipp A Gerber, Michael Huber, Alexandra Trkola, Milo A Puhan, Wendy Wei-Lynn Wong, Andreas Linkermann, Viswanathan Mohan, Hendrik Lehnert, Peter Nawroth, Triantafyllos Chavakis, Geltrude Mingrone, Christian Wolfrum, Annelies S Zinkernagel, Stefan R Bornstein\ Mechanisms and clinical relevance of the bidirectional relationship of viral infections with metabolic diseases\ The Lancet Diabetes & Endocrinology 11(9):675–693 (Jul 28, 2023) \ DOI: 10.1016/s2213-8587(23)00154-7
Juliane Valtin, Stephan Behrens, André Ruland, Florian Schmieder, Frank Sonntag, Lars D. Renner, Manfred F. Maitz, Carsten Werner\ A New In Vitro Blood Flow Model for the Realistic Evaluation of Antimicrobial Surfaces\ Adv Healthcare Materials 12(28) (Jul 27, 2023) \ DOI: 10.1002/adhm.202301300
Stefan Rothe, David Krause, Qian Zhang, Dennis Pohle, Nektarios Koukourakis, Jürgen W. Czarske\ Learning to control the complex light propagation through few-mode fiber without a reference wave\ CLEO 2023 (Jul 27, 2023) \ DOI: 10.1364/cleo_si.2023.sm3l.5
Anastasia Shatilovich, Vamshidhar R. Gade, Martin Pippel, Tarja T. Hoffmeyer, Alexei V. Tchesunov, Lewis Stevens, Sylke Winkler, Graham M. Hughes, Sofia Traikov, Michael Hiller, Elizaveta Rivkina, Philipp H. Schiffer, Eugene W. Myers, Teymuras V. Kurzchalia\ A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva\ PLoS Genet 19(7):e1010798 (Jul 27, 2023) \ DOI: 10.1371/journal.pgen.1010798
Daniel Martin Klotz, Franziska Maria Schwarz, Anna Dubrovska, Kati Schuster, Mirko Theis, Alexander Krüger, Oliver Kutz, Theresa Link, Pauline Wimberger, Stephan Drukewitz, Frank Buchholz, Jürgen Thomale, Jan Dominik Kuhlmann\ Establishment and Molecular Characterization of an In Vitro Model for PARPi-Resistant Ovarian Cancer\ Cancers 15(15):3774 (Jul 26, 2023) \ DOI: 10.3390/cancers15153774
Alexandra Parichenko, Wonyeong Choi, Seonghwan Shin, Marlena Schlecht, Rafael Gutierrez, Teuku Fawzul Akbar, Carsten Werner, Jeong‐Soo Lee, Bergoi Ibarlucea, Gianaurelio Cuniberti\ Hydrogel‐Gated Silicon Nanotransistors for SARS‐CoV‐2 Antigen Detection in Physiological Ionic Strength\ Adv Materials Inter 10(29) (Jul 24, 2023) \ DOI: 10.1002/admi.202300391
Georg Börner, Hauke Haehne, Jose Casadiego, Marc Timme\ Revealing system dimension from single-variable time series\ Chaos: An Interdisciplinary Journal of Nonlinear Science 33(7) (Jul 18, 2023) \ DOI: 10.1063/5.0156448
Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James Torrance, Eugene W. Myers, Richard Durbin, Mark Blaxter, Shane A. McCarthy\ MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads\ BMC Bioinformatics 24(1), 288 (Jul 18, 2023) \ DOI: 10.1186/s12859-023-05385-y
David T. Gonzales, Surased Suraritdechachai, Christoph Zechner, T.‐Y. Dora Tang\ Bidirectional Communication between Droplet Interface Bilayers Driven by Cell‐Free Quorum Sensing Gene Circuits**\ ChemSystemsChem 5(6) (Jul 17, 2023) \ DOI: 10.1002/syst.202300029
Dirk Habich, Alexander Krause, Johannes Pietrzyk, Christian Faerber, Wolfgang Lehner\ Simplicity done right for SIMDified query processing on CPU and FPGA\ Proceedings of the 1st Workshop on Simplicity in Management of Data (Jul 17, 2023) \ DOI: 10.1145/3596225.3596229
Claudia Sperling, Manfred F. Maitz, Vincent Körber, Stefanie Hänsel, Carsten Werner\ Advanced in vitro hemocompatibility assessment of biomaterials using a new flow incubation system\ Biomaterials Advances 153:213555 (Jul 14, 2023) \ DOI: 10.1016/j.bioadv.2023.213555
Tohid Siddiqui, Mehmet Ilyas Cosacak, Stanislava Popova, Prabesh Bhattarai, Elanur Yilmaz, Annie J. Lee, Yuhao Min, Xue Wang, Mariet Allen, Özkan İş, Zeynep Tansu Atasavum, Natalia Rodriguez-Muela, Badri N. Vardarajan, Delaney Flaherty, Andrew F. Teich, Ismael Santa-Maria, Uwe Freudenberg, Carsten Werner, Giuseppe Tosto, Richard Mayeux, Nilüfer Ertekin-Taner, Caghan Kizil\ Nerve growth factor receptor (Ngfr) induces neurogenic plasticity by suppressing reactive astroglial Lcn2/Slc22a17 signaling in Alzheimer’s disease\ npj Regen Med 8(1), 33 (Jul 10, 2023) \ DOI: 10.1038/s41536-023-00311-5
Nicole Poulsen, Nils Kröger\ Thalassiosira pseudonana (Cyclotella nana) (Hustedt) Hasle et Heimdal (Bacillariophyceae): A genetically tractable model organism for studying diatom biology, including biological silica formation\ Journal of Phycology 59(5):809–817 (Jul 10, 2023) \ DOI: 10.1111/jpy.13362
Sarah Perez, Suryanarayana Maddu, Ivo F. Sbalzarini, Philippe Poncet\ Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems\ Journal of Computational Physics 491:112342 (Jul 7, 2023) \ DOI: 10.1016/j.jcp.2023.112342
Caren Norden\ A Fish Eye View: Retinal Morphogenesis from Optic Cup to Neuronal Lamination\ Annu. Rev. Cell Dev. Biol. 39(1):175–196 (Jul 7, 2023) \ DOI: 10.1146/annurev-cellbio-012023-013036
Jorge Lázaro, Maria Costanzo, Marina Sanaki-Matsumiya, Charles Girardot, Masafumi Hayashi, Katsuhiko Hayashi, Sebastian Diecke, Thomas B Hildebrandt, Giovanna Lazzari, Jun Wu, Stoyan Petkov, Rüdiger Behr, Vikas Trivedi*, Mitsuhiro Matsuda*, Miki Ebisuya*\ A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals\ Cell Stem Cell, 30, 938–949 (Jul 6, 2023) \ * co-corresponding \ DOI: 10.1016/j.stem.2023.05.014
Dhawal Choudhary, Laura Mediani, Mario J. Avellaneda, Sveinn Bjarnason, Simon Alberti, Edgar E. Boczek, Pétur O. Heidarsson, Alessandro Mossa, Serena Carra, Sander J. Tans, Ciro Cecconi\ Human Small Heat Shock Protein B8 Inhibits Protein Aggregation without Affecting the Native Folding Process\ J. Am. Chem. Soc. 145(28):15188–15196 (Jul 6, 2023) \ DOI: 10.1021/jacs.3c02022
Wolfgang Lehner\ Datenbank-Community vernetzt sich in Dresden\ Datenbank Spektrum 23(2):153–158 (Jul 5, 2023) \ DOI: 10.1007/s13222-023-00447-0
M. Residori, S. Praetorius, P. de Anna, A. Voigt\ Influence of finite-size particles on fluid velocity and transport through porous media\ Phys. Rev. Fluids 8(7), 074501 (Jul 5, 2023) \ DOI: 10.1103/physrevfluids.8.074501
Qian Zhang, Sujay Charania, Stefan Rothe, Nektarios Koukourakis, Niels Neumann, Dirk Plettemeier, Juergen W. Czarske\ Multimode Optical Interconnects on Silicon Interposer Enable Confidential Hardware-to-Hardware Communication\ Sensors 23(13):6076 (Jul 3, 2023) \ DOI: 10.3390/s23136076
Felix Meyer, Benjamin Hernandez, Richard Pausch, René Widera, David Groß, Sergei Bastrakov, Axel Huebl, Guido Juckeland, Jeffrey Kelling, Matt Leinhauser, David Rogers, Ulrich Schramm, Klaus Steiniger, Stefan Gumhold, Jeff Young, Michael Bussmann, Sunita Chandrasekaran, Alexander Debus\ Hardware-Agnostic Interactive Exascale In Situ Visualization of Particle-In-Cell Simulations\ Proceedings of the Platform for Advanced Scientific Computing Conference (Jun 26, 2023) \ DOI: 10.1145/3592979.3593408
Abhinav Singh, Quentin Vagne, Frank Jülicher, Ivo F. Sbalzarini\ Spontaneous Flow Instabilities of Active Polar Fluids in Three Dimensions\ Phys. Rev. Research, 5, L022061 (Jun 22, 2023) \ DOI: 10.1103/PhysRevResearch.5.L022061
Jens Friedrichs, Ralf Helbig, Julia Hilsenbeck, Prithvi Raj Pandey, Jens-Uwe Sommer, Lars David Renner, Tilo Pompe, Carsten Werner\ Entropic repulsion of cholesterol-containing layers counteracts bioadhesion\ Nature 618(7966):733–739 (Jun 21, 2023) \ DOI: 10.1038/s41586-023-06033-4
Harish P Jain, Axel Voigt, Luiza Angheluta\ Robust statistical properties of T1 transitions in a multi-phase field model of cell monolayers\ Sci Rep 13(1), 10096 (Jun 21, 2023) \ DOI: 10.1038/s41598-023-37064-6
Kristian Kyle Le Vay, Elia Salibi, Basusree Ghosh, TY Dora Tang, Hannes Mutschler\ Ribozyme activity modulates the physical properties of RNA–peptide coacervates\ eLife 12 (Jun 16, 2023) \ DOI: 10.7554/elife.83543
Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, Ivo F. Sbalzarini\ Efficient Raycasting of Volumetric Depth Images for Remote Visualization of Large Volumes at High Frame Rates\ 2023 IEEE 16th Pacific Visualization Symposium (PacificVis) (Jun 14, 2023) \ DOI: 10.1109/pacificvis56936.2023.00014
Mehdi Moghaddamfar, Christian Färber, Wolfgang Lehner, Akash Kumar\ KeRRaS: Sort-Based Database Query Processing on Wide Tables Using FPGAs\ Proceedings of the 19th International Workshop on Data Management on New Hardware (Jun 14, 2023) \ DOI: 10.1145/3592980.3595300
Valentina Magno, Carsten Werner\ Tissue-Derived Decellularized Materials for Biomedical Applications\ Handbook of the Extracellular Matrix 1–33 (Jun 13, 2023) \ DOI: 10.1007/978-3-030-92090-6_42-1
David T Gonzales, Surased Suraritdechachai, T -Y Dora Tang\ Compartmentalized Cell-Free Expression Systems for Building Synthetic Cells\ Advances in Biochemical Engineering/Biotechnology (ABE,volume 186) (Jun 13, 2023) \ DOI: 10.1007/10_2023_221
Miguel A. Ruiz-Fresneda, Sebastian Schaefer, René Hübner, Karim Fahmy, Mohamed L. Merroun\ Exploring Antibacterial Activity and Bacterial-Mediated Allotropic Transition of Differentially Coated Selenium Nanoparticles\ ACS Appl. Mater. Interfaces 15(25):29958–29970 (Jun 9, 2023) \ DOI: 10.1021/acsami.3c05100
Anna M. Dowbaj, Timo N. Kohler, Lucía Cordero-Espinoza, Florian Hollfelder, Meritxell Huch\ Generation of liver mesenchyme and ductal cell organoid co-culture using cell self-aggregation and droplet microfluidics\ STAR Protocols 4(2):102333 (Jun 3, 2023) \ DOI: 10.1016/j.xpro.2023.102333
Moritz Thümler, Marc Timme\ Boosted fluctuation responses in power grids with active voltage dynamics\ J. Phys. Complex. 4(2):025019 (Jun 2, 2023) \ DOI: 10.1088/2632-072x/acdb26
Baldwin Nsonga, Jordi Ventosa-Molina, Denis Koschichow, Jochen Fröhlich, Stefan Gumhold, Gerik Scheuermann\ Visual analysis of the impact of periodic wakes on the pressure side of a turbine blade\ J Vis 26(5):1115–1137 (Jun 1, 2023) \ DOI: 10.1007/s12650-023-00930-6
Jan S. Schuhmacher, Susanne tom Dieck, Savvas Christoforidis, Cedric Landerer, Jimena Davila Gallesio, Lena Hersemann, Sarah Seifert, Ramona Schäfer, Angelika Giner, Agnes Toth-Petroczy, Yannis Kalaidzidis, Katherine E. Bohnsack, Markus T. Bohnsack, Erin M. Schuman, Marino Zerial\ The Rab5 effector FERRY links early endosomes with mRNA localization\ Molecular Cell 83(11):1839–1855.e13 (Jun 1, 2023) \ DOI: 10.1016/j.molcel.2023.05.012
Dennis Quentin, Jan S. Schuhmacher, Björn U. Klink, Jeni Lauer, Tanvir R. Shaikh, Pim J. Huis in’t Veld, Luisa M. Welp, Henning Urlaub, Marino Zerial, Stefan Raunser\ Structural basis of mRNA binding by the human FERRY Rab5 effector complex\ Mol Cell 83(11):1856-1871.e9 (Jun 1, 2023) \ DOI: 10.1016/j.molcel.2023.05.009
Ana Patricia Ramos, Alicja Szalapak, Lucrezia Camilla Ferme, Carl D. Modes\ From cells to form: A roadmap to study shape emergence in vivo\ Biophysical Journal 122(18):3587–3599 (May 26, 2023) \ DOI: 10.1016/j.bpj.2023.05.015
Giulia Pierini, Christian Dahmann\ Hedgehog morphogen gradient is robust towards variations in tissue morphology in Drosophila\ Sci Rep 13, 8454 (May 25, 2023) \ DOI: 10.1038/s41598-023-34632-8
Tomi Suomi, Inna Starskaia, Ubaid Ullah Kalim, Omid Rasool, Maria K. Jaakkola, Toni Grönroos, Tommi Välikangas, Caroline Brorsson, Gianluca Mazzoni, Sylvaine Bruggraber, Lut Overbergh, David Dunger, Mark Peakman, Piotr Chmura, Søren Brunak, Anke M. Schulte, Chantal Mathieu, Mikael Knip, Riitta Lahesmaa, Laura L. Elo, Chantal Mathieu, Pieter Gillard, Kristina Casteels, Lutgart Overbergh, David Dunger, Chris Wallace, Mark Evans, Ajay Thankamony, Emile Hendriks, Sylvaine Bruggraber, Loredana Marcoveccchio, Mark Peakman, Timothy Tree, Noel G. Morgan, Sarah Richardson, John A. Todd, Linda Wicker, Adrian Mander, Colin Dayan, Mohammad Alhadj Ali, Thomas Pieber, Decio L. Eizirik, Myriam Cnop, Søren Brunak, Flemming Pociot, Jesper Johannesen, Peter Rossing, Cristina Legido Quigley, Roberto Mallone, Raphael Scharfmann, Christian Boitard, Mikael Knip, Timo Otonkoski, Riitta Veijola, Riitta Lahesmaa, Matej Oresic, Jorma Toppari, Thomas Danne, Anette G. Ziegler, Peter Achenbach, Teresa Rodriguez-Calvo, Michele Solimena, Ezio E. Bonifacio, Stephan Speier, Reinhard Holl, Francesco Dotta, Francesco Chiarelli, Piero Marchetti, Emanuele Bosi, Stefano Cianfarani, Paolo Ciampalini, Carine De Beaufort, Knut Dahl-Jørgensen, Torild Skrivarhaug, Geir Joner, Lars Krogvold, Przemka Jarosz-Chobot, Tadej Battelino, Bernard Thorens, Martin Gotthardt, Bart O. Roep, Tanja Nikolic, Arnaud Zaldumbide, Ake Lernmark, Marcus Lundgren, Guillaume Costacalde, Thorsten Strube, Anke M. Schulte, Almut Nitsche, Mark Peakman, Jose Vela, Matthias Von Herrath, Johnna Wesley, Antonella Napolitano-Rosen, Melissa Thomas, Nanette Schloot, Allison Goldfine, Frank Waldron-Lynch, Jill Kompa, Aruna Vedala, Nicole Hartmann, Gwenaelle Nicolas, Jean van Rampelbergh, Nicolas Bovy, Sanjoy Dutta, Jeannette Soderberg, Simi Ahmed, Frank Martin, Esther Latres, Gina Agiostratidou, Anne Koralova, Ruben Willemsen, Anne Smith, Binu Anand, Vipan Datta, Vijith Puthi, Sagen Zac-Varghese, Renuka Dias, Premkumar Sundaram, Bijay Vaidya, Catherine Patterson, Katharine Owen, Colin Dayan, Barbara Piel, Simon Heller, Tabitha Randell, Tasso Gazis, Elise Bismuth Reismen, Jean-Claude Carel, Jean-Pierre Riveline, Jean-Francoise Gautier, Fabrizion Andreelli, Florence Travert, Emmanuel Cosson, Alfred Penfornis, Catherine Petit, Bruno Feve, Nadine Lucidarme, Emmanuel Cosson, Jean-Paul Beressi, Catherina Ajzenman, Alina Radu, Stephanie Greteau-Hamoumou, Cecile Bibal, Thomas Meissner, Bettina Heidtmann, Sonia Toni, Birgit Rami-Merhar, Bart Eeckhout, Bernard Peene, N. Vantongerloo, Toon Maes, Leen Gommers\ Gene expression signature predicts rate of type 1 diabetes progression\ eBioMedicine 92:104625 (May 22, 2023) \ DOI: 10.1016/j.ebiom.2023.104625
Mateusz Susik, Ivo F. Sbalzarini\ Variational inference accelerates accurate DNA mixture deconvolution\ Forensic Science International: Genetics 65:102890 (May 20, 2023) \ DOI: 10.1016/j.fsigen.2023.102890
Johannes Richard Soltwedel, Robert Haase\ Challenges and opportunities for bioimage analysis core‐facilities\ Journal of Microscopy 294(3):338–349 (May 18, 2023) \ DOI: 10.1111/jmi.13192
- (Alumni Group) Robert Haase
Jiawei Sun, Juergen W. Czarske\ Compressive holographic sensing simplifies quantitative phase imaging\ Light Sci Appl 12(1), 121 (May 17, 2023) \ DOI: 10.1038/s41377-023-01145-y
Felix Kramer, Carl D. Modes\ Biological flow networks: Antagonism between hydrodynamic and metabolic stimuli as driver of topological transitions\ Phys. Rev. Research 5(2), 023106 (May 17, 2023) \ DOI: 10.1103/physrevresearch.5.023106
Yuki Kanakubo, Chiho Watanabe, Johtaro Yamamoto, Naoya Yanagisawa, Hiroki Sakuta, Arash Nikoubashman, Miho Yanagisawa\ Cell-Sized Confinements Alter Molecular Diffusion in Concentrated Polymer Solutions Due to Length-Dependent Wetting of Polymers\ ACS Mater. Au 3(5):442–449 (May 16, 2023) \ DOI: 10.1021/acsmaterialsau.3c00018
E M de Kinkelder, E Fischer-Friedrich, S Aland\ Pulsatory patterns in active viscoelastic fluids with distinct relaxation time scales\ New J. Phys. 25(5):053035 (May 16, 2023) \ DOI: 10.1088/1367-2630/acd5f7
Elisa Nerli, Jenny Kretzschmar, Tommaso Bianucci, Mauricio Rocha-Martins, Christoph Zechner, Caren Norden\ Deterministic and probabilistic fate decisions co-exist in a single retinal lineage\ EMBO J 42(14):e112657 (May 15, 2023) \ DOI: 10.15252/embj.2022112657
Rahul O. Ramakrishnan, Benjamin M. Friedrich\ Learning run-and-tumble chemotaxis with support vector machines\ EPL 142 47001 (May 12, 2023) \ DOI: 10.1209/0295-5075/acd0d3
Zeynep Bendella, Catherine Nichols Widmann, Julian Philipp Layer, Yonah Lucas Layer, Robert Haase, Malte Sauer, Luzie Bieler, Nils Christian Lehnen, Daniel Paech, Michael T. Heneka, Alexander Radbruch, Frederic Carsten Schmeel\ Brain Volume Changes after COVID-19 Compared to Healthy Controls by Artificial Intelligence-Based MRI Volumetry\ Diagnostics 13(10):1716 (May 12, 2023) \ DOI: 10.3390/diagnostics13101716
- (Alumni Group) Robert Haase
Juliana Hildebrandt, Dirk Habich, Wolfgang Lehner\ BOUNCE: memory-efficient SIMD approach for lightweight integer compression\ Distrib Parallel Databases 41(3):439–466 (May 11, 2023) \ DOI: 10.1007/s10619-023-07426-0
Pamela L. Toledo, Diego S. Vazquez, Alejo R. Gianotti, Milagros B. Abate, Carolin Wegbrod, Juha M. Torkko, Michele Solimena, Mario R. Ermácora\ Condensation of the β‐cell secretory granule luminal cargoes pro/insulin and ICA512 RESP18 homology domain\ Protein Science 32(6) (May 10, 2023) \ DOI: 10.1002/pro.4649
Milica Jelicic, Lukas Theo Schmitt, Maciej Paszkowski-Rogacz, Angelika Walder, Nadja Schubert, Jenna Hoersten, Duran Sürün, Frank Buchholz\ Discovery and characterization of novel Cre-type tyrosine site-specific recombinases for advanced genome engineering\ Nucleic Acids Research 51(10):5285–5297 (May 10, 2023) \ DOI: 10.1093/nar/gkad366
Daumantas Matulis, Lars Wadsö, Karim Fahmy\ Special Issue “Advances in Monitoring Metabolic Activities of Microorganisms by Calorimetry”\ Microorganisms 11(5):1204 (May 5, 2023) \ DOI: 10.3390/microorganisms11051204
Anupam Singh, Joan Antoni Soler, Janelle Lauer, Stephan W. Grill, Marcus Jahnel, Marino Zerial, Shashi Thutupalli\ Two-component molecular motor driven by a GTPase cycle\ Nat. Phys. (May 4, 2023) \ DOI: 10.1038/s41567-023-02009-3
- Marcus Jahnel
- Stephan W. Grill
- Marino Zerial
Robert Haase, Thomas Pinetz, Zeynep Bendella, Erich Kobler, Daniel Paech, Wolfgang Block, Alexander Effland, Alexander Radbruch, Katerina Deike-Hofmann\ Reduction of Gadolinium-Based Contrast Agents in MRI Using Convolutional Neural Networks and Different Input Protocols\ Invest Radiol 58(6):420–430 (May 4, 2023) \ DOI: 10.1097/rli.0000000000000955
- (Alumni Group) Robert Haase
Ana-Maria Oprişoreanu, Fari Ryan, Claire Richmond, Yuliya Dzekhtsiarova, Neil O. Carragher, Thomas Becker, Samuel David, Catherina G. Becker\ Drug screening in zebrafish larvae reveals inflammation-related modulators of secondary damage after spinal cord injury in mice\ Theranostics 13(8):2531–2551 (May 4, 2023) \ DOI: 10.7150/thno.81332
Roderick C. Slieker, Louise A. Donnelly, Elina Akalestou, Livia Lopez-Noriega, Rana Melhem, Ayşim Güneş, Frederic Abou Azar, Alexander Efanov, Eleni Georgiadou, Hermine Muniangi-Muhitu, Mahsa Sheikh, Giuseppe N. Giordano, Mikael Åkerlund, Emma Ahlqvist, Ashfaq Ali, Karina Banasik, Søren Brunak, Marko Barovic, Gerard A. Bouland, Frédéric Burdet, Mickaël Canouil, Iulian Dragan, Petra J. M. Elders, Celine Fernandez, Andreas Festa, Hugo Fitipaldi, Phillippe Froguel, Valborg Gudmundsdottir, Vilmundur Gudnason, Mathias J. Gerl, Amber A. van der Heijden, Lori L. Jennings, Michael K. Hansen, Min Kim, Isabelle Leclerc, Christian Klose, Dmitry Kuznetsov, Dina Mansour Aly, Florence Mehl, Diana Marek, Olle Melander, Anne Niknejad, Filip Ottosson, Imre Pavo, Kevin Duffin, Samreen K. Syed, Janice L. Shaw, Over Cabrera, Timothy J. Pullen, Kai Simons, Michele Solimena, Tommi Suvitaival, Asger Wretlind, Peter Rossing, Valeriya Lyssenko, Cristina Legido Quigley, Leif Groop, Bernard Thorens, Paul W. Franks, Gareth E. Lim, Jennifer Estall, Mark Ibberson, Joline W. J. Beulens, Leen M ’t Hart, Ewan R. Pearson, Guy A. Rutter\ Identification of biomarkers for glycaemic deterioration in type 2 diabetes\ Nat Commun 14(1), 2533 (May 3, 2023) \ DOI: 10.1038/s41467-023-38148-7
Moritz Thümler, Shesha G. M. Srinivas, Malte Schröder, Marc Timme\ Synchrony for Weak Coupling in the Complexified Kuramoto Model\ Phys. Rev. Lett. 130(18), 187201 (May 3, 2023) \ DOI: 10.1103/physrevlett.130.187201
Joke Johanna Hahn, Peter Egbert Hermann Schwarz, Manuel Gado, Jochen Seißler, Martin Hrabě de Angelis, Annette Schürmann, Stefan Kabisch, Andreas Pfeiffer, Hans-Ulrich Häring, Matthias Blüher, Julia Szendrödi, Sebastian M. Meyhöfer, Michael Roden, Louise Fritsche, Norbert Stefan, Robert Wagner, Andreas Fritsche, Reiner Jumpertz von Schwarzenberg, Andreas L. Birkenfeld, Michele Solimena, Stefan Bornstein, Nikolaos Perakakis\ Plasma proteomic profiles in prediabetes reversing to normoglycemia or progressing to diabetes in a year – a cross-sectional and prospective analysis\ Diabetologie und Stoffwechsel (May 2, 2023) \ DOI: 10.1055/s-0043-1767842
Marta Venturas, Xingbo Yang, Denny Sakkas, Dan Needleman\ Noninvasive metabolic profiling of cumulus cells, oocytes, and embryos via fluorescence lifetime imaging microscopy: a mini-review\ Hum Reprod 38(5):799–810 (May 2, 2023) \ DOI: 10.1093/humrep/dead063
Pietro Incardona, Aryaman Gupta, Serhii Yaskovets, Ivo F. Sbalzarini\ A C++ Library for Memory Layout and Performance Portability of Scientific Applications\ Lecture Notes in Computer Science 109–120 (May 1, 2023) \ DOI: 10.1007/978-3-031-31209-0_8
Tianfang Lin, Zhongyuan Yu, Nico Volkens, Matthew McGinity, Stefan Gumhold\ An Immersive Labeling Method for Large Point Clouds\ 2023 IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops (VRW) (May 1, 2023) \ DOI: 10.1109/vrw58643.2023.00257
Pavel Tsaytler, Jinhua Liu, Gaby Blaess, Dennis Schifferl, Jesse V. Veenvliet, Lars Wittler, Bernd Timmermann, Bernhard G. Herrmann, Frederic Koch\ BMP4 triggers regulatory circuits specifying the cardiac mesoderm lineage\ Development 150 (10): dev201450. (May 2023) \ DOI: 10.1242/dev.201450
Katharina Schmidt, Ning Guo, Wenjie Wang, Juergen Czarske, Nektarios Koukourakis\ Chromatic aberration correction employing reinforcement learning\ Opt. Express 31(10):16133 (Apr 28, 2023) \ DOI: 10.1364/oe.487045
Yong Xu, Rebecca Rothe, Dagmar Voigt, Ahmed Sayed, Can Huang, Sandra Hauser, Pao-Wan Lee, Meiying Cui, James P. Sáenz, Aldo R. Boccaccini, Kai Zheng, Jens Pietzsch, Yixin Zhang\ A self-assembled dynamic extracellular matrix-like hydrogel system with multi-scale structures for cell bioengineering applications\ Acta biomaterialia. 162, p. 211-225, 15 p. (Apr 27, 2023) \ DOI: 10.1016/j.actbio.2023.03.015
Xiaojie Zhang, Sindhuja Sridharan, Ievgeniia Zagoriy, Christina Eugster Oegema, Cyan Ching, Tim Pflaesterer, Herman KH Fung, Isabelle Becher, Ina Poser, Christoph W Müller, Anthony A Hyman, Mikhail M Savitski, Julia Mahamid\ Molecular mechanisms of stress-induced reactivation in mumps virus condensates\ Cell 186 (9), 1877-1894. e27 (Apr 27, 2023) \ DOI: 10.1016/j.cell.2023.03.015
E M de Kinkelder, E Fischer-Friedrich, S Aland\ Chiral flows can induce neck formation in viscoelastic surfaces\ New J. Phys. 25(5):053034 (Apr 26, 2023) \ DOI: 10.1088/1367-2630/acd079
Konstantin Okonechnikov, Aylin Camgöz, Owen Chapman, Sameena Wani, Donglim Esther Park, Jens-Martin Hübner, Abhijit Chakraborty, Meghana Pagadala, Rosalind Bump, Sahaana Chandran, Katerina Kraft, Rocio Acuna-Hidalgo, Derek Reid, Kristin Sikkink, Monika Mauermann, Edwin F. Juarez, Anne Jenseit, James T. Robinson, Kristian W. Pajtler, Till Milde, Natalie Jäger, Petra Fiesel, Ling Morgan, Sunita Sridhar, Nicole G. Coufal, Michael Levy, Denise Malicki, Charlotte Hobbs, Stephen Kingsmore, Shareef Nahas, Matija Snuderl, John Crawford, Robert J. Wechsler-Reya, Tom Belle Davidson, Jennifer Cotter, George Michaiel, Gudrun Fleischhack, Stefan Mundlos, Anthony Schmitt, Hannah Carter, Kulandaimanuvel Antony Michealraj, Sachin A. Kumar, Michael D. Taylor, Jeremy Rich, Frank Buchholz, Jill P. Mesirov, Stefan M. Pfister, Ferhat Ay, Jesse R. Dixon, Marcel Kool, Lukas Chavez\ 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma\ Nat Commun 14(1), 2300 (Apr 21, 2023) \ DOI: 10.1038/s41467-023-38044-0
Shiv Rekhi, Dinesh Sundaravadivelu Devarajan, Michael P. Howard, Young C. Kim, Arash Nikoubashman, Jeetain Mittal\ Role of Strong Localized vs Weak Distributed Interactions in Disordered Protein Phase Separation\ J. Phys. Chem. B 127(17):3829–3838 (Apr 20, 2023) \ DOI: 10.1021/acs.jpcb.3c00830
Simon Alberti, Serena Carra\ A shared fate for nuclear and cytosolic inclusions\ Nat Cell Biol 25(5):629–630 (Apr 20, 2023) \ DOI: 10.1038/s41556-023-01121-z
Weizhou Luo, Zhongyuan Yu, Rufat Rzayev, Marc Satkowski, Stefan Gumhold, Matthew McGinity, Raimund Dachselt\ Pearl: Physical Environment based Augmented Reality Lenses for In-Situ Human Movement Analysis\ Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems 1–15 (Apr 20, 2023) \ DOI: 10.1145/3544548.3580715
Marzan Tasnim Oyshi, Sebastian Vogt, Stefan Gumhold\ TmoTA: Simple, Highly Responsive Tool for Multiple Object Tracking Annotation\ Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems 1–11 (Apr 20, 2023) \ DOI: 10.1145/3544548.3581185
Wolfgang Büschel, Katja Krug, Konstantin Klamka, Raimund Dachselt\ Demonstrating CleAR Sight: Transparent Interaction Panels for Augmented Reality\ Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems (Apr 20, 2023) \ DOI: 10.1145/3544549.3583891
Mats Ole Ellenberg, Marc Satkowski, Weizhou Luo, Raimund Dachselt\ Spatiality and Semantics - Towards Understanding Content Placement in Mixed Reality\ Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems (Apr 20, 2023) \ DOI: 10.1145/3544549.3585853
Katja Krug, Marc Satkowski, Reuben Docea, Tzu-Yu Ku, Raimund Dachselt\ Point Cloud Alignment through Mid-Air Gestures on a Stereoscopic Display\ Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems (Apr 20, 2023) \ DOI: 10.1145/3544549.3585862
Federica Luppino, Ivan A. Adzhubei, Christopher A. Cassa, Agnes Toth-Petroczy\ DeMAG predicts the effects of variants in clinically actionable genes by integrating structural and evolutionary epistatic features\ Nat Commun 14(1), 2230 (Apr 19, 2023) \ DOI: 10.1038/s41467-023-37661-z
J V Roggeveen, H A Stone, C Kurzthaler\ Transport of a passive scalar in wide channels with surface topography: An asymptotic theory\ J. Phys.: Condens. Matter 35(27):274003 (Apr 19, 2023) \ DOI: 10.1088/1361-648x/acc8ad
Christian B. Schimper, Paul Pachschwöll, Manfred F. Maitz, Carsten Werner, Thomas Rosenau, Falk Liebner\ Hemocompatibility of cellulose phosphate aerogel membranes with potential use in bone tissue engineering\ Front. Bioeng. Biotechnol. 11 (Apr 19, 2023) \ DOI: 10.3389/fbioe.2023.1152577
Dennis Pohle, Fabio A. Barbosa, Filipe M. Ferreira, Jürgen Czarske, Stefan Rothe\ Intelligent self calibration tool for adaptive few-mode fiber multiplexers using multiplane light conversion\ J. Eur. Opt. Society-Rapid Publ. 19(1):29 (Apr 18, 2023) \ DOI: 10.1051/jeos/2023020
Nicole S Paulat, Jessica M Storer, Diana D Moreno-Santillán, Austin B Osmanski, Kevin A M Sullivan, Jenna R Grimshaw, Jennifer Korstian, Michaela Halsey, Carlos J Garcia, Claudia Crookshanks, Jaquelyn Roberts, Arian F A Smit, Robert Hubley, Jeb Rosen, Emma C Teeling, Sonja C Vernes, Eugene Myers, Martin Pippel, Thomas Brown, Michael Hiller, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang, Danny Rojas, Liliana M Dávalos, Kerstin Lindblad-Toh, Elinor K Karlsson, David A Ray\ Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia\ Molecular Biology and Evolution 40(5) (Apr 18, 2023) \ DOI: 10.1093/molbev/msad092
Uwe Freudenberg, Passant Atallah, Jens‐Uwe Sommer, Carsten Werner, Matthias Ballauff\ Analysis of the Binding of Cytokines to Highly Charged Polymer Networks\ Macromolecular Bioscience 23(6) (Apr 15, 2023) \ DOI: 10.1002/mabi.202200561
Christian Hoyer, Lucas Wetzel, Dimitrios Prousalis, Jens Wagner, Frank Jülicher, Frank Ellinger\ Entrainment of Mutually Synchronized Spatially Distributed 24 GHz Oscillators\ IEEE Trans. Circuits Syst. I 70(7):2665–2678 (Apr 13, 2023) \ DOI: 10.1109/tcsi.2023.3264996
Veikko F. Geyer, Stefan Diez\ Horizontal Magnetic Tweezers to Directly Measure the Force-Velocity Relationship for Multiple Kinesin Motors\ Small 2300558 (Apr 10, 2023) \ DOI: 10.1002/smll.202300558
Hannah E. Walters, Konstantin E. Troyanovskiy, Alwin M. Graf, Maximina H. Yun\ Senescent cells enhance newt limb regeneration by promoting muscle dedifferentiation\ Aging Cell, 22, e013826 (Apr 6, 2023) \ DOI: 10.1111/acel.13826
Nadia Rostam, Soumyadeep Ghosh, Chi Fung Willis Chow, Anna Hadarovich, Cedric Landerer, Rajat Ghosh, HongKee Moon, Lena Hersemann, Diana M. Mitrea, Isaac A. Klein, Anthony A. Hyman, Agnes Toth-Petroczy\ CD-CODE: crowdsourcing condensate database and encyclopedia\ Nature Methods volume 20, pages 673–676 (Apr 6, 2023) \ DOI: 10.1038/s41592-023-01831-0
Despina Soteriou, Markéta Kubánková, Christine Schweitzer, Rocío López-Posadas, Rashmita Pradhan, Oana-Maria Thoma, Andrea-Hermina Györfi, Alexandru-Emil Matei, Maximilian Waldner, Jörg HW Distler, Stefan Scheuermann, Jens Langejürgen, Markus Eckstein, Regine Schneider-Stock, Raja Atreya, Markus F Neurath, Arndt Hartmann, Jochen Guck\ Rapid single-cell physical phenotyping of mechanically dissociated tissue biopsies\ Nature Biomedical Engineering 7 (11) (Apr 6, 2023) \ DOI: 10.1038/s41551-023-01015-3
Elena Bachini, Veit Krause, Axel Voigt\ The interplay of geometry and coarsening in multicomponent lipid vesicles under the influence of hydrodynamics\ Physics of Fluids 35, 042102 (Apr 5, 2023) \ DOI: 10.1063/5.0145884
Mark Skamrahl, Justus Schünemann, Markus Mukenhirn, Hongtao Pang, Jannis Gottwald, Marcel Jipp, Maximilian Ferle, Angela Rübeling, Tabea A. Oswald, Alf Honigmann, Andreas Janshoff\ Cellular segregation in cocultures is driven by differential adhesion and contractility on distinct timescales\ Proc. Natl. Acad. Sci. U.S.A. 120(15) (Apr 3, 2023) \ DOI: 10.1073/pnas.2213186120
Takashi Nishio, Yohji Shimada, Yuko Yoshikawa, Takahiro Kenmotsu, Helmut Schiessel, Kenichi Yoshikawa\ The Anticancer Drug Daunomycin Directly Affects Gene Expression and DNA Structure\ IJMS 24(7):6631 (Apr 3, 2023) \ DOI: 10.3390/ijms24076631
Weida Liao, Elena Erben, Moritz Kreysing, Eric Lauga\ Theoretical model of confined thermoviscous flows for artificial cytoplasmic streaming\ Phys. Rev. Fluids 8(3), 034202 (Mar 30, 2023) \ DOI: 10.1103/physrevfluids.8.034202
Ralf Zimmermann, Mirko Nitschke, Valentina Magno, Uwe Freudenberg, Katja Sockel, Friedrich Stölzel, Manja Wobus, Uwe Platzbecker, Carsten Werner\ Discriminant Principal Component Analysis of ToF‐SIMS Spectra for Deciphering Compositional Differences of MSC‐Secreted Extracellular Matrices\ Small Methods 7(6) (Mar 29, 2023) \ DOI: 10.1002/smtd.202201157
Ganesh Agam, Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose, Neharika Chamachi, Sang Yoon Chung, Timothy D. Craggs, Marijn de Boer, Dina Grohmann, Taekjip Ha, Andreas Hartmann, Jelle Hendrix, Verena Hirschfeld, Christian G. Hübner, Thorsten Hugel, Dominik Kammerer, Hyun-Seo Kang, Achillefs N. Kapanidis, Georg Krainer, Kevin Kramm, Edward A. Lemke, Eitan Lerner, Emmanuel Margeat, Kirsten Martens, Jens Michaelis, Jaba Mitra, Gabriel G. Moya Muñoz, Robert B. Quast, Nicole C. Robb, Michael Sattler, Michael Schlierf, Jonathan Schneider, Tim Schröder, Anna Sefer, Piau Siong Tan, Johann Thurn, Philip Tinnefeld, John van Noort, Shimon Weiss, Nicolas Wendler, Niels Zijlstra, Anders Barth, Claus A. M. Seidel, Don C. Lamb, Thorben Cordes\ Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins\ Nat Methods (Mar 27, 2023) \ DOI: 10.1038/s41592-023-01807-0
Christine Mayr, Tanja Mittag, T.-Y. Dora Tang, Wenyu Wen, Hong Zhang, Huaiying Zhang\ Frontiers in biomolecular condensate research\ Nat Cell Biol 25(4):512–514 (Mar 27, 2023) \ DOI: 10.1038/s41556-023-01102-2
Claudia Gerri, Afshan McCarthy, Gwen Mei Scott, Marius Regin, Panagiotis Stamatiadis, Sophie Brumm, Claire S. Simon, Janet Lee, Cristina Montesinos, Caroline Hassitt, Sarah Hockenhull, Daniel Hampshire, Kay Elder, Phil Snell, Leila Christie, Ali A. Fouladi-Nashta, Hilde Van de Velde, Kathy K. Niakan\ A conserved role of the Hippo signalling pathway in initiation of the first lineage specification event across mammals\ Development 150(8) (Mar 27, 2023) \ DOI: 10.1242/dev.201112
Tom Brandstätter, David B. Brückner, Yu Long Han, Ricard Alert, Ming Guo, Chase P. Broedersz\ Curvature induces active velocity waves in rotating spherical tissues\ Nat Commun 14(1), 1643 (Mar 24, 2023) \ DOI: 10.1038/s41467-023-37054-2
Sarita Hebbar, Sofia Traikov, Catrin Hälsig, Elisabeth Knust\ Modulating the Kynurenine pathway or sequestering toxic 3-hydroxykynurenine protects the retina from light-induced damage in Drosophila\ PLoS Genet 19(3):e1010644 (Mar 23, 2023) \ DOI: 10.1371/journal.pgen.1010644
Carlotta Hoffmann, Peter E. Schwarz, Christos S. Mantzoros, Andreas L. Birkenfeld, Christian Wolfrum, Michele Solimena, Stefan R. Bornstein, Nikolaos Perakakis\ Circulating levels of gastrointestinal hormones in prediabetes reversing to normoglycemia or progressing to diabetes in a year–A cross-sectional and prospective analysis\ Diabetes Research and Clinical Practice 199:110636 (Mar 20, 2023) \ DOI: 10.1016/j.diabres.2023.110636
Teresa Rojo-Romanos, Janet Karpinski, Sebastian Millen, Niklas Beschorner, Florian Simon, Maciej Paszkowski-Rogacz, Felix Lansing, Paul Martin Schneider, Jan Sonntag, Joachim Hauber, Andrea K. Thoma-Kress, Frank Buchholz\ Precise excision of HTLV-1 provirus with a designer-recombinase\ Molecular Therapy 31(7):2266–2285 (Mar 17, 2023) \ DOI: 10.1016/j.ymthe.2023.03.014
Meiying Cui, Dzung Nguyen, Michelle Patino Gaillez, Stephan Heiden, Weilin Lin, Michael Thompson, Francesco V. Reddavide, Qinchang Chen, Yixin Zhang\ Trio-pharmacophore DNA-encoded chemical library for simultaneous selection of fragments and linkers\ Nature communications. 14 (1) (Mar 17, 2023) \ DOI: 10.1038/s41467-023-37071-1
Robert Kuschmierz, Elias Scharf, Jakob Dremel, Kinga Zolnacz, Ronja Stephan, Michael Steinke, Detlef Ristau, Jürgen W. Czarske\ 3D micro-endoscopy enabled by 2-photon polymerization and advanced fiber design (Conference Presentation)\ Adaptive Optics and Wavefront Control for Biological Systems IX (Mar 16, 2023) \ DOI: 10.1117/12.2651436
Jiawei Sun, Nektarios Koukourakis, Juergen Czarske\ Image quality enhancement for ultra-thin lensless multi-core fiber phase endoscopes\ Quantitative Phase Imaging IX (Mar 16, 2023) \ DOI: 10.1117/12.2651444
Jürgen W. Czarske, Nektarios Koukourakis, Stefan Rothe, Felix Wagner, Mike O. Karl\ Investigation of neurodegeneration in the human organoid retina with transmission matrix measurements (Conference Presentation)\ Adaptive Optics and Wavefront Control for Biological Systems IX (Mar 16, 2023) \ DOI: 10.1117/12.2661936
Tom Glosemeyer, Julian Lich, Robert Kuschmierz, Jürgen W. Czarske\ Step-by-step transfer function reversal for single-shot 3D fiber endoscopy using a diffuser\ Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXX (Mar 15, 2023) \ DOI: 10.1117/12.2650292
Nektarios Koukourakis, Leon Liebig, Jürgen W. Czarske\ Impulsive stimulated Brillouin microscopy for high-speed biomedical diagnostics (Conference Presentation)\ Optical Elastography and Tissue Biomechanics X (Mar 15, 2023) \ DOI: 10.1117/12.2651776
Felix Horst, Michael Brand, Stefan Hans, Leonhard Karsch, Elisabeth Lessmann, Steffen Löck, Michael Schürer, Jörg Pawelke, Elke Beyreuther\ In Regard to Böhlen et al.\ Int J Radiat Oncol Biol Phys (Mar 15, 2023) \ DOI: 10.1016/j.ijrobp.2022.11.015
Jovan Mircetic, Aylin Camgöz, Moustafa Abohawya, Li Ding, Julia Dietzel, Sebastián García Tobar, Maciej Paszkowski‐Rogacz, Therese Seidlitz, Tim Schmäche, Marie‐Christin Mehnert, Olga Sidorova, Jürgen Weitz, Frank Buchholz, Daniel E. Stange\ CRISPR/Cas9 Screen in Gastric Cancer Patient‐Derived Organoids Reveals KDM1A‐NDRG1 Axis as a Targetable Vulnerability\ Small Methods 7(6) (Mar 13, 2023) \ DOI: 10.1002/smtd.202201605
J. Méndez, C. Alrabbaa, P. Koopmann, R. Langner, F. Baader, R. Dachselt\ Evonne: A Visual Tool for Explaining Reasoning with OWL Ontologies and Supporting Interactive Debugging\ Computer Graphics Forum 42(6) (Mar 13, 2023) \ DOI: 10.1111/cgf.14730
Johannes Pahlke, Ivo F. Sbalzarini\ A Unifying Mathematical Definition of Particle Methods\ IEEE Open Journal of the Computer Society ( Volume: 4) (Mar 8, 2023) \ DOI: 10.1109/OJCS.2023.3254466
Louisa K. Drake, Marcus Keatinge, Themistoklis M. Tsarouchas, Catherina G. Becker, David A. Lyons, Thomas Becker\ Rapid Testing of Gene Function in Axonal Regeneration After Spinal Cord Injury Using Larval Zebrafish\ Methods in Molecular Biology 263–277 (Mar 7, 2023) \ DOI: 10.1007/978-1-0716-3012-9_15
Nino Lauber, Ondrej Tichacek, Rudrarup Bose, Christoph Flamm, Luca Leuzzi, T-Y Dora Tang, Kepa Ruiz-Mirazo, Daniele De Martino\ Statistical mechanics of biomolecular condensates via cavity methods\ iScience 26(4):106300 (Mar 6, 2023) \ DOI: 10.1016/j.isci.2023.106300
Ronja Stephan, Elias Scharf, Kinga Zolnacz, Katharina Hausmann, Matthias Ließmann, Lea Kötters, Detlev Ristau, Jürgen W. Czarske, Robert Kuschmierz, Michael Steinke\ Aperiodic multi-core fibers for lens-less endoscopy\ Optical Fibers and Sensors for Medical Diagnostics, Treatment and Environmental Applications XXIII (Mar 6, 2023) \ DOI: 10.1117/12.2648872
Xinren Yu, Adele Doyle\ Molecular Circuit Discovery for Mechanobiology of Cardiovascular Disease\ Regen. Eng. Transl. Med. 9(1):108–124 (Mar 2023) \ DOI: 10.1007/s40883-022-00264-z
Helmut Schiessel\ Spatial and Temporal Organization of Chromatin at Small and Large Scales\ Annu. Rev. Condens. Matter Phys. 14(1):193–210 (Mar 1, 2023) \ DOI: 10.1146/annurev-conmatphys-040821-115729
Macià Esteve Pallarès, Irina Pi-Jaumà, Isabela Corina Fortunato, Valeria Grazu, Manuel Gómez-González, Pere Roca-Cusachs, Jesus M. de la Fuente, Ricard Alert, Raimon Sunyer, Jaume Casademunt, Xavier Trepat\ Stiffness-dependent active wetting enables optimal collective cell durotaxis\ Nat. Phys. 19, 279–289 (Feb 2023) \ DOI: 10.1038/s41567-022-01835-1
Jana Oertel, Susanne Sachs, Katrin Flemming, Muhammad Hassan Obeid, Karim Fahmy\ Distinct Effects of Chemical Toxicity and Radioactivity on Metabolic Heat of Cultured Cells Revealed by “Isotope-Editing”\ Microorganisms 11(3):584 (Feb 27, 2023) \ DOI: 10.3390/microorganisms11030584
Jana Sievers, Vaibhav Mahajan, Petra B. Welzel, Carsten Werner, Anna Taubenberger\ Precision Hydrogels for the Study of Cancer Cell Mechanobiology\ Adv Healthcare Materials 12(14) (Feb 24, 2023) \ DOI: 10.1002/adhm.202202514
Deolinda Silva, Lucas Schirmer, Tiffany S. Pinho, Passant Atallah, Jorge R. Cibrão, Rui Lima, João Afonso, Sandra B‐Antunes, Cláudia R. Marques, João Dourado, Uwe Freudenberg, Rui A. Sousa, Carsten Werner, António J. Salgado\ Sustained Release of Human Adipose Tissue Stem Cell Secretome from Star‐Shaped Poly(ethylene glycol) Glycosaminoglycan Hydrogels Promotes Motor Improvements after Complete Transection in Spinal Cord Injury Rat Model\ Adv Healthcare Materials 12(17) (Feb 24, 2023) \ DOI: 10.1002/adhm.202202803
Robert Haase, Thomas Pinetz, Erich Kobler, Daniel Paech, Alexander Effland, Alexander Radbruch, Katerina Deike-Hofmann\ Artificial Contrast\ Invest Radiol 58(8):539–547 (Feb 24, 2023) \ DOI: 10.1097/rli.0000000000000963
- (Alumni Group) Robert Haase
Jing Wang, Marcus Michel, Lisa Bialas, Giulia Pierini, Christian Dahmann\ Preferential recruitment and stabilization of Myosin II at compartment boundaries in Drosophila\ J Cell Sci 136 (5): jcs260447. (Feb 24, 2023) \ DOI: 10.1242/jcs.260447
Kosti Tapio, Charlotte Kielar, Johannes M. Parikka, Adrian Keller, Heini Järvinen, Karim Fahmy, J. Jussi Toppari\ Large-Scale Formation of DNA Origami Lattices on Silicon\ Chem. Mater. 35(5):1961–1971 (Feb 23, 2023) \ DOI: 10.1021/acs.chemmater.2c03190
Pascal Y. Schönberg, Li Ding, Frank Buchholz\ Genom-Editierung ohne die DNA-Sequenz zu verändern — geht das?\ Biospektrum 29(1):46–48 (Feb 21, 2023) \ DOI: 10.1007/s12268-023-1882-2
Lucas Daniel Wittwer, Felix Reichel, Paul Müller, Jochen Guck, Sebastian Aland\ A new hyperelastic lookup table for RT-DC\ Soft Matter 19(11):2064–2073 (Feb 20, 2023) \ DOI: 10.1039/d2sm01418a
Oded Rechavi, Pavel Tomancak\ Who did what: changing how science papers are written to detail author contributions\ Nat Rev Mol Cell Biol 24(8):519–520 (Feb 16, 2023) \ DOI: 10.1038/s41580-023-00587-x
Lucas Kuhrts, Lukas Helmbrecht, Willem L. Noorduin, Darius Pohl, Xiaoxiao Sun, Alexander Palatnik, Cornelia Wetzker, Anne Jantschke, Michael Schlierf, Igor Zlotnikov\ Recruiting Unicellular Algae for the Mass Production of Nanostructured Perovskites\ Adv. Sci.2023, 2300355 (Feb 12, 2023) \ DOI: 10.1002/advs.202300355
Mehdi Moghaddamfar, Norman May, Christian Färber, Wolfgang Lehner, Akash Kumar\ A Study of Early Aggregation in Database Query Processing on FPGAs\ Proceedings of the 2023 ACM/SIGDA International Symposium on Field Programmable Gate Arrays (Feb 10, 2023) \ DOI: 10.1145/3543622.3573194
Blair P. Bentley, Tomás Carrasco-Valenzuela, Elisa K. S. Ramos, Harvinder Pawar, Larissa Souza Arantes, Alana Alexander, Shreya M. Banerjee, Patrick Masterson, Martin Kuhlwilm, Martin Pippel, Jacquelyn Mountcastle, Bettina Haase, Marcela Uliano-Silva, Giulio Formenti, Kerstin Howe, William Chow, Alan Tracey, Ying Sims, Sarah Pelan, Jonathan Wood, Kelsey Yetsko, Justin R. Perrault, Kelly Stewart, Scott R. Benson, Yaniv Levy, Erica V. Todd, H. Bradley Shaffer, Peter Scott, Brian T. Henen, Robert W. Murphy, David W. Mohr, Alan F. Scott, David J. Duffy, Neil J. Gemmell, Alexander Suh, Sylke Winkler, Françoise Thibaud-Nissen, Mariana F. Nery, Tomas Marques-Bonet, Agostinho Antunes, Yaron Tikochinski, Peter H. Dutton, Olivier Fedrigo, Eugene W. Myers, Erich D. Jarvis, Camila J. Mazzoni, Lisa M. Komoroske\ Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories\ Proc. Natl. Acad. Sci. U.S.A. 120(7) (Feb 7, 2023) \ DOI: 10.1073/pnas.2201076120
Georg Krainer, Kadi L. Saar, William E. Arter, Timothy J. Welsh, Magdalena A. Czekalska, Raphaël P. B. Jacquat, Quentin Peter, Walther C. Traberg, Arvind Pujari, Akhila K. Jayaram, Pavankumar Challa, Christopher G. Taylor, Lize-Mari van der Linden, Titus Franzmann, Roisin M. Owens, Simon Alberti, David Klenerman, Tuomas P. J. Knowles\ Direct digital sensing of protein biomarkers in solution\ Nat Commun 14(1), 653 (Feb 6, 2023) \ DOI: 10.1038/s41467-023-35792-x
Alicia Daeden, Alexander Mietke, Emmanuel Derivery, Carole Seum, Frank Jülicher, Marcos Gonzalez-Gaitan\ Polarized branched Actin modulates cortical mechanics to produce unequal-size daughters during asymmetric division\ Nat Cell Biol 25(2):235–245 (Feb 6, 2023) \ DOI: 10.1038/s41556-022-01058-9
Qian Wu, Euclides Sacomboio, Lara Valente de Souza, Rui Martins, Jamil Kitoko, Sílvia Cardoso, Temitope W. Ademolue, Tiago Paixão, Jaakko Lehtimäki, Ana Figueiredo, Caren Norden, Pierre-Louis Tharaux, Guenter Weiss, Fudi Wang, Susana Ramos, Miguel P. Soares\ Renal control of life-threatening malarial anemia\ Cell Reports 42(2):112057 (Feb 2, 2023) \ DOI: 10.1016/j.celrep.2023.112057
Mateusz Susik, Ivo F. Sbalzarini\ Analysis of the Hamiltonian Monte Carlo genotyping algorithm on PROVEDIt mixtures including a novel precision benchmark\ Forensic Science International: Genetics 64:102840 (Feb 1, 2023) \ DOI: 10.1016/j.fsigen.2023.102840
Maarten P Bebelman, Matthew J Bovyn, Carlotta M Mayer, Julien Delpierre, Ronald Naumann, Nuno P Martins, Alf Honigmann, Yannis Kalaidzidis, Pierre A Haas, Marino Zerial\ Hepatocyte apical bulkheads provide a mechanical means to oppose bile pressure\ Journal of Cell Biology 222 (4), e202208002 (Jan 30, 2023) \ DOI: 10.1083/jcb.202208002
Christa Ringers, Stephan Bialonski, Mert Ege, Anton Solovev, Jan Niklas Hansen, Inyoung Jeong, Benjamin M Friedrich, Nathalie Jurisch-Yaksi\ Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia\ eLife 12:e77701 (Jan 26, 2023) \ DOI: 10.7554/eLife.77701
Christoph R. Meinecke, Georg Heldt, Thomas Blaudeck, Frida W. Lindberg, Falco C. M. J. M. van Delft, Mohammad Ashikur Rahman, Aseem Salhotra, Alf Månsson, Heiner Linke, Till Korten, Stefan Diez, Danny Reuter, Stefan E. Schulz\ Nanolithographic fabrication technologies for network-based biocomputation devices\ Materials 16 (3) 1046 (Jan 24, 2023) \ DOI: 10.3390/ma16031046
Ankush Checkervarty, Jens-Uwe Sommer, Marco Werner\ Machine learning of an implicit solvent for dynamic Monte Carlo simulations\ The Journal of Chemical Physics 158(12) (Jan 24, 2023) \ DOI: 10.1063/5.0116618
Anne-Lena Moor, Christoph Zechner\ Dynamic information transfer in stochastic biochemical networks\ Physical Review Research 5(1):013032 (Jan 23, 2023) \ DOI: 10.1103/PhysRevResearch.5.013032
Ali Al-Fatlawi, Michael Schroeder, A. Francis Stewart\ The Rad52 SSAP superfamily and new insight into homologous recombination\ Commun Biol 6(1), 87 (Jan 23, 2023) \ DOI: 10.1038/s42003-023-04476-z
D. GroB, M. Klauck, T. P. Gros, M. Steinmetz, J. Hoffmann, S. Gumhold\ Glyph-Based Visual Analysis of Q-Leaning Based Action Policy Ensembles on Racetrack\ 2022 26th International Conference Information Visualisation (IV) (Jan 23, 2023) \ DOI: 10.1109/iv56949.2022.00011
Elias Scharf, Robert Kuschmierz, Ronja Stephan, Michael Steinke, Jürgen W. Czarske\ Needle-size fibre endoscope with 3D printed DOEs for minimally invasive procedures in biomedicine\ Biomedical Spectroscopy, Microscopy, and Imaging II (Jan 23, 2023) \ DOI: 10.1117/12.2620319
Jürgen W. Czarske, Nektarios Koukourakis, Stefan Rothe, Felix Wagner, Mike O. Karl\ Understanding neurodegeneration in human organoid retina with optical microscopy\ Biomedical Spectroscopy, Microscopy, and Imaging II (Jan 23, 2023) \ DOI: 10.1117/12.2622155
Belin Selcen Beydag-Tasöz, Siham Yennek, Anne Grapin-Botton\ Towards a better understanding of diabetes mellitus using organoid models\ Nat Rev Endocrinol (Jan 20, 2023) \ DOI: 10.1038/s41574-022-00797-x
Arash Nikoubashman, Miho Yanagisawa\ Confinement-Induced Fractionation and Liquid–Liquid Phase Separation of Polymer Mixtures\ Polymers 15(3):511 (Jan 19, 2023) \ DOI: 10.3390/polym15030511
Joël Mabillard, Christoph A. Weber, Frank Jülicher\ Heat Fluctuations in Chemically Active Systems\ Phys. Rev. E 107, 014118 (Jan 13, 2023) \ DOI: 10.1103/PhysRevE.107.014118
Hongxia Hao, Ellen M. Adams, Sarah Funke, Gerhard Schwaab, Martina Havenith, Teresa Head-Gordon\ Highly Altered State of Proton Transport in Acid Pools in Charged Reverse Micelles\ J. Am. Chem. Soc. 145, 3, 1826–1834 (Jan 12, 2023) \ DOI: 10.1021/jacs.2c11331
Ksenia Kuznetsova, Noémie M Chabot, Martino Ugolini, Edlyn Wu, Manan Lalit, Haruka Oda, Yuko Sato, Hiroshi Kimura, Florian Jug, Nadine L Vastenhouw\ Nanog organizes transcription bodies\ Current Biology 33 (1) (Jan 9, 2023) \ DOI: 10.1016/j.cub.2022.11.015
Weilin Lin, Shanil Gandhi, Prabesh Bhattarai, Keida Kasa, Caghan Kizil, Yixin Zhang\ Combining high throughput array synthesis and growth algorithm to discover TNF-α binders with new structures and properties\ European Journal of Medicinal Chemistry. 248, 115078 (Jan 7, 2023) \ DOI: 10.1016/j.ejmech.2022.115078
Samuel E. Lacey, Helen E. Foster, Gaia Pigino\ The molecular structure of IFT-A and IFT-B in anterograde intraflagellar transport trains\ Nat Struct Mol Biol 30(5):584–593 (Jan 2, 2023) \ DOI: 10.1038/s41594-022-00905-5
Alessandro Mongera, Marie Pochitaloff, Hannah J. Gustafson, Georgina A. Stooke-Vaughan, Payam Rowghanian, Sangwoo Kim, Otger Campàs*\ Mechanics of the cellular microenvironment as probed by cells in vivo during zebrafish presomitic mesoderm differentiation\ Nat. Mater. 22, 135–143 (Jan 2023) \ * corresponding author \ DOI: 10.1038/s41563-022-01433-9
Mathias Schenkel, Dorna Ravamehr-Lake, Tomasz Czerniak, James P.Saenz, Georg Krainer, Michael Schlierf, Charles M. Deber\ Impact of cholesterol and Lumacaftor on the folding of CFTR helical hairpins\ Biochim Biophys Acta Biomembr 184078 (Jan 1, 2023) \ DOI: 10.1016/j.bbamem.2022.184078
2022
255 publication(s) listed
Tina Helmecke, Dominik Hahn, Nadine Matzke, Lisa Ferdinand, Lars Franke, Sebastian Kühn, Gunter Fischer, Carsten Werner, Manfred F. Maitz\ Inflammation‐Controlled Anti‐Inflammatory Hydrogels\ Advanced Science 10(7) (Dec 30, 2022) \ DOI: 10.1002/advs.202206412
Lukas Theo Schmitt, Maciej Paszkowski-Rogacz, Florian Jug, Frank Buchholz\ Prediction of designer-recombinases for DNA editing with generative deep learning\ Nat Commun 13(1), 7966 (Dec 27, 2022) \ DOI: 10.1038/s41467-022-35614-6
Shanshan Xu, Maria E Gierisch, Anna Katharina Schellhaus, Ina Poser, Simon Alberti, Florian A Salomons, Nico P Dantuma\ Cytosolic stress granules relieve the ubiquitin‐proteasome system in the nuclear compartment\ The EMBO Journal 42(3) (Dec 27, 2022) \ DOI: 10.15252/embj.2022111802
Katja Krug, Wolfgang Büschel, Konstantin Klamka, Raimund Dachselt\ CleAR Sight: Exploring the Potential of Interacting with Transparent Tablets in Augmented Reality\ 2022 IEEE International Symposium on Mixed and Augmented Reality (ISMAR) (Dec 27, 2022) \ DOI: 10.1109/ISMAR55827.2022.00034
Hannes Emmerich, Leon Knupfer, Sascha Heitkam, Eric Starke, Pavel Trtik, Ludwig Schaller, David Weik, Jurgen Czarske\ Ultrasound imaging of liquid fraction in foam\ IEEE Trans. Instrum. Meas. 1–1 (Dec 21, 2022) \ DOI: 10.1109/tim.2022.3228582
William E. Arter, Runzhang Qi, Nadia A. Erkamp, Georg Krainer, Kieran Didi, Timothy J. Welsh, Julia Acker, Jonathan Nixon-Abell, Seema Qamar, Jordina Guillén-Boixet, Titus M. Franzmann, David Kuster, Anthony A. Hyman, Alexander Borodavka, Peter St George-Hyslop, Simon Alberti, Tuomas P. J. Knowles\ Biomolecular condensate phase diagrams with a combinatorial microdroplet platform\ Nature Communications volume 13, 7845 (Dec 21, 2022) \ DOI: 10.1038/s41467-022-35265-7
Jiawei Sun, Nektarios Koukourakis, Jürgen W. Czarske\ Real-time quantitative phase imaging through a multicore fiber using deep learning\ Holography, Diffractive Optics, and Applications XII (Dec 20, 2022) \ DOI: 10.1117/12.2642514
Maria K. Koch, Akhilandeshwari Ravichandran, Berline Murekatete, Julien Clegg, Mary Teresa Joseph, Madison Hampson, Mitchell Jenkinson, Hannah S. Bauer, Cameron Snell, Cheng Liu, Madeline Gough, Erik W. Thompson, Carsten Werner, Dietmar W. Hutmacher, Larisa M. Haupt, Laura J. Bray\ Exploring the Potential of PEG‐Heparin Hydrogels to Support Long‐Term Ex Vivo Culture of Patient‐Derived Breast Explant Tissues\ Adv Healthcare Materials 12(14) (Dec 17, 2022) \ DOI: 10.1002/adhm.202202202
Lucas Woltmann, Claudio Hartmann, Wolfgang Lehner, Paul Rausch, Katja Ferger\ Sensor-based jump detection and classification with machine learning in trampoline gymnastics\ Ger J Exerc Sport Res 53(2):187–195 (Dec 8, 2022) \ DOI: 10.1007/s12662-022-00866-3
Juliana Hildebrandt, Johannes Pietrzyk, Alexander Krause, Dirk Habich, Wolfgang Lehner\ Partition-based SIMD Processing and its Application to Columnar Database Systems\ Datenbank Spektrum 23(1):53–63 (Dec 7, 2022) \ DOI: 10.1007/s13222-022-00431-0
Christoph Heintze, Iaroslav Babenko, Jirina Zackova Suchanova, Alastair Skeffington, Benjamin M. Friedrich, Nils Kröger\ The molecular basis for pore pattern morphogenesis in diatom silica\ Proc Natl Acad Sci U S A 119(49):e2211549119 (Dec 2, 2022) \ DOI: 10.1073/pnas.2211549119
Elisa Donato, Nadia Correia, Carolin Andresen, Darja Karpova, Roberto Würth, Corinna Klein, Markus Sohn, Adriana Przybylla, Petra Zeisberger, Kathrin Rothfelder, Helmut Salih, Halvard Bonig, Sebastian Stasik, Christoph Röllig, Anna Dolnik, Lars Bullinger, Frank Buchholz, Christian Thiede, Daniel Hübschmann, Andreas Trumpp\ Retained functional normal and preleukemic HSCs at diagnosis are associated with good prognosis in DNMT3AmutNPM1mut AMLs\ Blood Advances 7(6):1011–1018 (Dec 1, 2022) \ DOI: 10.1182/bloodadvances.2022008497
F. Schmieder, R. Habibey, V. Busskamp, J.W. Czarske, L. Büttner\ Adaptive Holographic Optogenetic Illumination for Human Neural Network Analysis\ Digital Holography and 3-D Imaging 2022 (Dec 1, 2022) \ DOI: 10.1364/dh.2022.w4a.7
Alexis J. Haas, Ceniz Zihni, Susanne M. Krug, Riccardo Maraspini, Tetsuhisa Otani, Mikio Furuse, Alf Honigmann, Maria S. Balda, Karl Matter\ ZO-1 Guides Tight Junction Assembly and Epithelial Morphogenesis via Cytoskeletal Tension-Dependent and -Independent Functions\ Cells 11(23):3775 (Nov 28, 2022) \ DOI: 10.3390/cells11233775
Thomas Bach, Artur Andrzejak, Changyun Seo, Christian Bierstedt, Christian Lemke, Daniel Ritter, Dong Won Hwang, Erda Sheshi, Felix Schabernack, Frank Renkes, Gordon Gaumnitz, Jakob Martens, Lars Hoemke, Michael Felderer, Michael Rudolf, Neetha Jambigi, Norman May, Robin Joy, Ruben Scheja, Sascha Schwedes, Sebastian Seibel, Sebastian Seifert, Stefan Haas, Stephan Kraft, Thomas Kroll, Tobias Scheuer, Wolfgang Lehner\ Testing Very Large Database Management Systems: The Case of SAP HANA\ Datenbank Spektrum 22(3):195–215 (Nov 25, 2022) \ DOI: 10.1007/s13222-022-00426-x
Verena Kast, Ali Nadernezhad, Dagmar Pette, Anastasiia Gabrielyan, Maximilian Fusenig, Kim C. Honselmann, Daniel E. Stange, Carsten Werner, Daniela Loessner\ A Tumor Microenvironment Model of Pancreatic Cancer to Elucidate Responses toward Immunotherapy\ Adv Healthcare Materials 12(14) (Nov 24, 2022) \ DOI: 10.1002/adhm.202201907
Laura Martínez‐Vidal, Valentina Magno, Petra B. Welzel, Jens Friedrichs, Martin Bornhäuser, Carsten Werner\ Combining Cryogel Architecture and Macromolecular Crowding‐Enhanced Extracellular Matrix Cues to Mimic the Bone Marrow Niche\ Macro Chemistry & Physics 224(1) (Nov 24, 2022) \ DOI: 10.1002/macp.202200348
Moritz Thümler, Malte Schröder, Marc Timme\ Nonlinear and divergent responses of fluctuation-driven systems\ IFAC-PapersOnLine 55(30):254–259 (Nov 23, 2022) \ DOI: 10.1016/j.ifacol.2022.11.061
Keisuke Ishihara, Arghyadip Mukherjee, Elena Gromberg, Jan Brugués, Elly M. Tanaka, Frank Jülicher\ Topological Morphogenesis of Neuroepithelial Organoids\ Nature Physics, 19, 177–183 (online: Nov 21, 2022) \ DOI: 10.1038/s41567-022-01822-6
Zhi-Feng Huang, Hartmut Löwen, Axel Voigt\ Defect dynamics in active smectics induced by confining geometry and topology\ Commun Phys 5(1), 294 (Nov 19, 2022) \ DOI: 10.1038/s42005-022-01064-1
Willi G. Mantei, Benedikt Stender, Jonas Wiedenmann, Elias Scharf, Robert Kuschmierz, Jürgen W. Czarske\ Needle-shaped lensless holographic endoscopes realized with TPP\ Optical Fibers and Sensors for Medical Diagnostics, Treatment and Environmental Applications XXII (Nov 18, 2022) \ DOI: 10.1117/12.2608705
Rahul O. Ramakrishnan, Andrea Auconi and Benjamin M. Friedrich\ Learning stochastic filtering\ EPL 140 31002 (Nov 17, 2022) \ DOI: 10.1209/0295-5075/ac9d01
Tina Subic, Ivo F. Sbalzarini\ A Gaussian jump process formulation of the reaction-diffusion master equation enables faster exact stochastic simulations\ J. Chem. Phys. 157, 194110 (Nov 17, 2022) \ DOI: 10.1063/5.0123073
Frank Jülicher, Jacques Prost, John Toner\ Broken Living Layers: Dislocations in Active Smectic Liquid Crystals\ Phys. Rev. E 106, 054607 (Nov 15, 2022) \ DOI: 10.1103/PhysRevE.106.054607
Stefan Rothe, Qian Zhang, Dennis Pohle, Nektarios Koukourakis, Juergen W. Czarske\ Smart transmission matrix measurement of multimode fibers using digital holography and deep learning for confidential data transmission\ Digital Holography and 3-D Imaging 2022 (Nov 10, 2022) \ DOI: 10.1364/dh.2022.m2a.5
Caitlyn L McCafferty, Ophelia Papoulas, Mareike A Jordan, Gabriel Hoogerbrugge, Candice Nichols, Gaia Pigino, David W Taylor, John B Wallingford, Edward M Marcotte\ Integrative modeling reveals the molecular architecture of the intraflagellar transport A (IFT-A) complex\ eLife 11 (Nov 8, 2022) \ DOI: 10.7554/elife.81977
Jiachen Wu, Tijue Wang, Ortrud Uckermann, Roberta Galli, Gabriele Schackert, Liangcai Cao, Juergen Czarske, Robert Kuschmierz\ Learned end-to-end high-resolution lensless fiber imaging towards real-time cancer diagnosis\ Sci Rep 12(1), 18846 (Nov 7, 2022) \ DOI: 10.1038/s41598-022-23490-5
Julius Gonsior, Maik Thiele, Wolfgang Lehner\ ImitAL: Learned Active Learning Strategy on Synthetic Data\ Lecture Notes in Computer Science 47–56 (Nov 5, 2022) \ DOI: 10.1007/978-3-031-18840-4_4
Takashi Nishio, Tomoya Masaoka, Yuko Yoshikawa, Koichiro Sadakane, Takahiro Kenmotsu, Helmut Schiessel, Kenichi Yoshikawa\ Markedly Different Effects of Monovalent Cations on the Efficiency of Gene Expression\ Advanced Biology 7(3) (Nov 4, 2022) \ DOI: 10.1002/adbi.202200164
Anne Grapin-Botton, Yung Hae Kim\ Pancreas organoid models of development and regeneration\ Development 149(20) (Oct 31, 2022) \ DOI: 10.1242/dev.201004
Xuejing Wang, Shuqi Wu, T.-Y. Dora Tang, Liangfei Tian\ Engineering strategies for sustainable synthetic cells\ Trends in Chemistry 4(12):1106–1120 (Oct 27, 2022) \ DOI: 10.1016/j.trechm.2022.09.011
Jingyuan Zhu, Aseem Salhotra, Christoph Robert Meinecke, Pradheebha Surendiran, Roman Lyttleton, Danny Reuter, Hillel Kugler, Stefan Diez, Alf Månsson, Heiner Linke, Till Korten\ Solving the 3-SAT problem using network-based biocomputation\ Adv. Intell. Syst. 2200202 (Oct 26, 2022) \ DOI: 10.1002/aisy.202200202
Anna Svirina, Neharika Chamachi, Michael Schlierf\ Single-molecule approaches reveal outer membrane protein biogenesis dynamics\ BioEssays, 00, e2200149 (Oct 25, 2022) \ DOI: 10.1002/bies.202200149
Georg Börner, Malte Schröder, Davide Scarselli, Nazmi Burak Budanur, Björn Hof, Marc Timme\ Explosive transitions in epidemic dynamics\ J. Phys. Complex. 3(4):04LT02 (Oct 25, 2022) \ DOI: 10.1088/2632-072x/ac99cd
Qinghao Yu, Hannah E. Walters, Maximina H. Yun\ Induction and Characterization of Cellular Senescence in Salamanders\ Methods Mol Biol: 2562:135-154 (online: Oct 23, 2022) \ DOI: 10.1007/978-1-0716-2659-7_8
Florian Bürkle, Maik Förste, Kaspars Dadzis, Iason Tsiapkinis, Olf Pätzold, Alexandros Charitos, Michael Dues, Jürgen Czarske, Lars Büttner\ Application of optical velocity measurements including a novel calibration technique for micron-resolution to investigate the gas flow in a model experiment for crystal growth\ Flow Measurement and Instrumentation 88:102258 (Oct 21, 2022) \ DOI: 10.1016/j.flowmeasinst.2022.102258
Keiichi Katsumoto, Siham Yennek, Chunguang Chen, Luis Fernando Delgadillo Silva, Sofia Traikov, Dror Sever, Ajuna Azad, Jingdong Shan, Seppo Vainio, Nikolay Ninov, Stephan Speier, Anne Grapin-Botton\ Wnt4 is heterogeneously activated in maturing β-cells to control calcium signaling, metabolism and function\ Nat Commun 13(1), 6255 (Oct 21, 2022) \ DOI: 10.1038/s41467-022-33841-5
Helmut Schiessel\ Computer simulations of chromatin phase separation\ Biophysical Journal 121(22):4244–4246 (Oct 19, 2022) \ DOI: 10.1016/j.bpj.2022.10.007
Camilo Riquelme-Guzmán, Stephanie L Tsai, Karen Carreon Paz, Congtin Nguyen, David Oriola, Maritta Schuez, Jan Brugués, Joshua D Currie, Tatiana Sandoval-Guzmán\ Osteoclast-mediated resorption primes the skeleton for successful integration during axolotl limb regeneration\ eLife 11:e79966. (Oct 19, 2022) \ DOI: 10.7554/eLife.79966
Ronja Stephan, Elias Scharf, Kinga Zolnacz, Katharina Hausmann, Matthias Ließmann, Lea Kötters, Jürgen Czarske, Detlev Ristau, Robert Kuschmierz, Michael Steinke\ Scalable fabrication of twisted aperiodic multicore fibers for next-generation lens-less endoscopy\ EPJ Web Conf. 267:02027 (Oct 18, 2022) \ DOI: 10.1051/epjconf/202226702027
Eliane P. van Dam, Benedikt König, Sashary Ramos, Ellen M. Adams, Gerhard Schwaab, Martina Havenith\ Observation of dissipating solvated protons upon hydrogel formation\ Phys. Chem. Chem. Phys., 24, 27893-27899 (Oct 17, 2022) \ DOI: 10.1039/D2CP01949C
Jan Geisler, Victoria Tianjing Yan, Stephan Grill, Arjun Narayanan\ Mass Balance Imaging: A Phase Portrait Analysis for Characterizing Growth Kinetics of Biomolecular Condensates\ Methods in Molecular Biology (2023) 413–424, vol 2563 (online: Oct 14, 2022) \ DOI: 10.1007/978-1-0716-2663-4_21
Jonathan Bauermann, Sudarshana Laha, Patrick M. McCall, Frank Jülicher, Christoph A. Weber\ Chemical Kinetics and Mass Action in Coexisting Phases\ J. Am. Chem. Soc. 144(42):19294–19304 (Oct 14, 2022) \ DOI: 10.1021/jacs.2c06265
Martijn Zuiddam, Bahareh Shakiba, Helmut Schiessel\ Multiplexing mechanical and translational cues on genes\ Biophysical Journal 121(22):4311–4324 (Oct 13, 2022) \ DOI: 10.1016/j.bpj.2022.10.011
Zahra Mohammadyarloo, Jens-Uwe Sommer\ Co-nonsolvency Transition in Polymer Solutions: A Simulation Study\ Macromolecules 55(20):8975–8986 (Oct 13, 2022) \ DOI: 10.1021/acs.macromol.2c01280
Martin Z. Bazant, Carsten Werner\ Editorial overview: Electrokinetics 2022\ Current Opinion in Colloid & Interface Science 63:101643 (Oct 11, 2022) \ DOI: 10.1016/j.cocis.2022.101643
Jürgen W. Czarske, Lars Buettner, Clemens Bilsing\ Dynamic aberration correction using a deformable mirror and double-helix point spread function for flow metrology (Conference Presentation)\ Unconventional Imaging and Adaptive Optics 2022 (Oct 11, 2022) \ DOI: 10.1117/12.2633992
Karim Fahmy, Thomas P. Sakmar\ Interdisciplinary biophysical studies of membrane proteins bacteriorhodopsin and rhodopsin\ Biophys Rev 15(1):111–125 (Oct 8, 2022) \ DOI: 10.1007/s12551-022-01003-y
Karen G. Soans, Ana Patricia Ramos, Jaydeep Sidhaye, Abhijeet Krishna, Anastasia Solomatina, Karl B. Hoffmann, Raimund Schlüßler, Jochen Guck, Ivo F. Sbalzarini, Carl D. Modes, Caren Norden\ Collective cell migration during optic cup formation features changing cell-matrix interactions linked to matrix topology\ Current Biology 32(22):4817–4831.e9 (Oct 7, 2022) \ DOI: 10.1016/j.cub.2022.09.034
Shovamayee Maharana, Stefanie Kretschmer, Susan Hunger, Xiao Yan, David Kuster, Sofia Traikov, Thomas Zillinger, Marc Gentzel, Shobha Elangovan, Padmanava Dasgupta, Nagaraja Chappidi, Nadja Lucas, Katharina Isabell Maser, Henrike Maatz, Alexander Rapp, Virginie Marchand, Young-Tae Chang, Yuri Motorin, Norbert Hubner, Gunther Hartmann, Anthony A Hyman, Simon Alberti, Min Ae Lee-Kirsch\ SAMHD1 controls innate immunity by regulating condensation of immunogenic self RNA\ Molecular cell 82 (19), 3712-3728 (Oct 6, 2022) \ DOI: 10.1016/j.molcel.2022.08.031
Nicole Poulsen, Helene Hennig, Veikko F Geyer, Stefan Diez, Richard Wetherbee, Sorel Fitz-Gibbon, Matteo Pellegrini, Nils Kröger\ On the role of cell surface associated, mucin-like glycoproteins in the pennate diatom Craspedostauros Australis (Bacillariophyceae)\ J. Phycol. 59, 54–69 (2023) (Oct 5, 2022) \ DOI: 10.1111/jpy.13287
Juergen W. Czarske, Jiachen Wu, Tijue Wang, Tom Glosemeyer, Julian Andreas Lich, Robert Kuschmierz\ Learning-based high-resolution lensless fiber microendoscopy (Conference Presentation)\ Emerging Topics in Artificial Intelligence (ETAI) 2022 (Oct 4, 2022) \ DOI: 10.1117/12.2633990
Rouhollah Habibey, Johannes Striebel, Felix Schmieder, Jürgen Czarske, Volker Busskamp\ Long-term morphological and functional dynamics of human stem cell-derived neuronal networks on high-density micro-electrode arrays\ Front. Neurosci. 16 (Oct 4, 2022) \ DOI: 10.3389/fnins.2022.951964
Swayamshree Patra, Debashish Chowdhury, Frank Jülicher\ Length control of long cell protrusions: Rulers, timers and transport\ Physics Reports 987:1–51 (Sep 29, 2022) \ DOI: 10.1016/j.physrep.2022.08.002
Axel Hertzschuch, Claudio Hartmann, Dirk Habich, Wolfgang Lehner\ Turbo-charging SPJ query plans with learned physical join operator selections\ Proc. VLDB Endow. 15(11):2706–2718 (Sep 29, 2022) \ DOI: 10.14778/3551793.3551825
Benjamin Russig, David Groß, Raimund Dachselt, Stefan Gumhold\ On-Tube Attribute Visualization for Multivariate Trajectory Data\ IEEE Transactions on Visualization and Computer Graphics, 29, 1288-1298 (online: Sep 28, 2022) \ DOI: 10.1109/TVCG.2022.3209400
Adrian Pascal Nievergelt, Ilia Zykov, Dennis Diener, Aditya Chhatre, Tim-Oliver Buchholz, Markus Delling, Stefan Diez, Florian Jug, Luděk Štěpánek, Gaia Pigino\ Conversion of anterograde into retrograde trains is an intrinsic property of intraflagellar transport\ Current Biology 32(18), R967–R969 (Sep 26, 2022) \ DOI: 10.1016/j.cub.2022.07.033
Ruosong Wang, Lucas Schirmer, Torsten Wieduwilt, Ronny Förster, Markus A. Schmidt, Uwe Freudenberg, Carsten Werner, Andreas Fery, Christian Rossner\ Colorimetric Biosensors Based on Polymer/Gold Hybrid Nanoparticles: Topological Effects of the Polymer Coating\ Langmuir 38(40):12325–12332 (Sep 26, 2022) \ DOI: 10.1021/acs.langmuir.2c02013
Tingying He, Petra Isenberg, Raimund Dachselt, Tobias Isenberg\ BeauVis: A Validated Scale for Measuring the Aesthetic Pleasure of Visual Representations\ IEEE Trans Vis Comput Graph, 29(1):363-373. (online: Sep 26, 2022) \ DOI: 10.1109/TVCG.2022.3209390
Jan Baumeister, Bernd Finkbeiner, Stefan Gumhold, Malte Schledjewski\ Real-Time Visualization of Stream-Based Monitoring Data\ Lecture Notes in Computer Science 325–335 (Sep 22, 2022) \ DOI: 10.1007/978-3-031-17196-3_21
Andrea Delle Vedove, Janani Natarajan, Ginevra Zanni, Matthias Eckenweiler, Anixa Muiños-Bühl, Markus Storbeck, Jordina Guillén Boixet, Sabina Barresi, Simone Pizzi, Irmgard Hölker, Friederike Körber, Titus M. Franzmann, Enrico S. Bertini, Janbernd Kirschner, Simon Alberti, Marco Tartaglia, Brunhilde Wirth\ CAPRIN1P512L causes aberrant protein aggregation and associates with early-onset ataxia\ Cell. Mol. Life Sci. 79(10), 526 (Sep 22, 2022) \ DOI: 10.1007/s00018-022-04544-3
Juergen W. Czarske, Tom Glosemeyer, Elias Scharf, Robert Kuschmierz\ 3D lensless fiber endoscopy exploiting deep learning and diffractive optical elements\ Imaging and Applied Optics Congress 2022 (3D, AOA, COSI, ISA, pcAOP) (Sep 22, 2022) \ DOI: 10.1364/3d.2022.3tu3a.1
J. W. Czarske, T. Wang, J. Wu, O. Uckermann, R. Galli, R. Kuschmierz\ Lensless Near-Field Imaging with Enhanced Deep Super-Resolution Towards Real-Time Intraoperative Tumor Classification\ Imaging and Applied Optics Congress 2022 (3D, AOA, COSI, ISA, pcAOP) (Sep 22, 2022) \ DOI: 10.1364/isa.2022.itu5e.1
Ioannis Nellas, K Venkatesan Iyer, Juan M Iglesias‐Artola, Martin Pippel, André Nadler, Suzanne Eaton, Natalie A Dye\ Hedgehog signaling can enhance glycolytic ATP production in the Drosophila wing disc\ EMBO Reports 23(11) (Sep 22, 2022) \ DOI: 10.15252/embr.202154025
Anastasia Solomatina, Alice Cezanne, Yannis Kalaidzidis, Marino Zerial, Ivo F Sbalzarini\ Design centering enables robustness screening of pattern formation models\ Bioinformatics, 38, 2022, ii134–ii140 (Sep 18, 2022) \ DOI: 10.1093/bioinformatics/btac480
Natalia López-Anguita, Seher Ipek Gassaloglu, Maximilian Stötzel, Adriano Bolondi, Deniz Conkar, Marina Typou, René Buschow, Jesse V. Veenvliet, Aydan Bulut-Karslioglu\ Hypoxia induces an early primitive streak signature, enhancing spontaneous elongation and lineage representation in gastruloids\ Development 149(20) (Sep 14, 2022) \ DOI: 10.1242/dev.200679
Pietro Luigi Muzzeddu, Hidde Derk Vuijk, Hartmut Löwen, Jens-Uwe Sommer, Abhinav Sharma\ Active chiral molecules in activity gradients\ The Journal of Chemical Physics 157(13) (Sep 12, 2022) \ DOI: 10.1063/5.0109817
Takeshi Takeuchi, Yoshihiko Suzuki, Shugo Watabe, Kiyohito Nagai, Tetsuji Masaoka, Manabu Fujie, Mayumi Kawamitsu, Noriyuki Satoh, Eugene W Myers\ A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster\ DNA Research 29(6) (Sep 12, 2022) \ DOI: 10.1093/dnares/dsac035
Daniel A. Estabrook, John O. Chapman, Shuo-Ting Yen, Helen H. Lin, Ethan T. Ng, Linglan Zhu, Heidi L. van de Wouw, Otger Campàs, Ellen M. Sletten*\ Macromolecular Crowding as an Intracellular Stimulus for Responsive Nanomaterials\ J. Am. Chem. Soc. 144(37):16792–16798 (Sep 9, 2022) \ * corresponding author \ DOI: 10.1021/jacs.2c03064
Amanpreet Kaur Bains, Lena Behrens Wu, Jennifer Rivière, Sandra Rother, Valentina Magno, Jens Friedrichs, Carsten Werner, Martin Bornhäuser, Katharina S. Götze, Michael Cross, Uwe Platzbecker, Manja Wobus\ Bone marrow mesenchymal stromal cell-derived extracellular matrix displays altered glycosaminoglycan structure and impaired functionality in Myelodysplastic Syndromes\ Front. Oncol. 12 (Sep 8, 2022) \ DOI: 10.3389/fonc.2022.961473
Johanna E M Dickmann, Jochen C Rink, Frank Jülicher\ Long-range morphogen gradient formation by cell-to-cell signal propagation\ Phys. Biol. 19, 066001 (Sep 7, 2022) \ DOI: 10.1088/1478-3975/ac86b4
Rouhollah Habibey, Jesús Eduardo Rojo Arias, Johannes Striebel, Volker Busskamp\ Microfluidics for Neuronal Cell and Circuit Engineering\ Chem. Rev. 122(18):14842–14880 (Sep 7, 2022) \ DOI: 10.1021/acs.chemrev.2c00212
Jamie Woych, Alonso Ortega Gurrola, Astrid Deryckere, Eliza C. B. Jaeger, Elias Gumnit, Gianluca Merello, Jiacheng Gu, Alberto Joven Araus, Nicholas D. Leigh, Maximina Yun, András Simon, Maria Antonietta Tosches\ Cell-type profiling in salamanders identifies innovations in vertebrate forebrain evolution\ Science 377(6610): eabp9186 (Sep 2, 2022) \ DOI: 10.1126/science.abp9186
Raimund Dachselt, Sarah Alice Gaggl, Markus Krötzsch, Julián Méndez, Dominik Rusovac, Mei Yang\ NEXAS: A Visual Tool for Navigating and Exploring Argumentation Solution Spaces\ Proceedings of the 9th International Conference on Computational Models of Argument (COMMA 2022), volume 220146 of FAIA, 116-127 (Sep 2022) \ DOI: 10.3233/FAIA220146
Kenny Mattonet, Fréderike W. Riemslagh, Stefan Guenther, Karin D. Prummel, Gokul Kesavan, Stefan Hans, Ingo Ebersberger, Michael Brand, Alexa Burger, Sven Reischauer, Christian Mosimann, Didier Y. R. Stainier\ Endothelial versus pronephron fate decision is modulated by the transcription factors Cloche/Npas4l, Tal1, and Lmo2\ Sci. Adv. 8(35) (Aug 31, 2022) \ DOI: 10.1126/sciadv.abn2082
Guillaume Salbreux, Frank Jülicher, Jacques Prost, Andrew Callan-Jones\ Theory of nematic and polar active fluid surfaces\ Phys. Rev. Research 4(3), 033158 (Aug 29, 2022) \ DOI: 10.1103/physrevresearch.4.033158
Jakob Dremel, Elias Scharf, Robert Kuschmierz, Jürgen Czarske\ Minimal-invasive faseroptische Endomikroskopie für die Medizin\ tm - Technisches Messen 89(s1):25–30 (Aug 29, 2022) \ DOI: 10.1515/teme-2022-0068
Johannes Hohlbein, Benedict Diederich, Barbora Marsikova, Emmanuel G. Reynaud, Séamus Holden, Wiebke Jahr, Robert Haase, Kirti Prakash\ Open microscopy in the life sciences: quo vadis?\ Nat Methods 19(9):1020–1025 (Aug 25, 2022) \ DOI: 10.1038/s41592-022-01602-3
- (Alumni Group) Robert Haase
Erik Kalz, Hidde Derk Vuijk, Iman Abdoli, Jens-Uwe Sommer, Hartmut Löwen, Abhinav Sharma\ Collisions Enhance Self-Diffusion in Odd-Diffusive Systems\ Phys. Rev. Lett. 129(9), 090601 (Aug 25, 2022) \ DOI: 10.1103/physrevlett.129.090601
Anja Reusch, Maik Thiele, Wolfgang Lehner\ Transformer-Encoder-Based Mathematical Information Retrieval\ Lecture Notes in Computer Science 175–189 (Aug 24, 2022) \ DOI: 10.1007/978-3-031-13643-6_14
Uwe Töpfer, Karla Yanín Guerra Santillán, Elisabeth Fischer-Friedrich\ Stiffness Measurement of Drosophila Egg Chambers by Atomic Force Microscopy\ Methods in Molecular Biology 301–315 (Aug 18, 2022) \ DOI: 10.1007/978-1-0716-2541-5_15
Natalie A. Dye\ Cultivation and Live Imaging of Drosophila Imaginal Discs\ Methods in Molecular Biology 317–334 (Aug 18, 2022) \ DOI: 10.1007/978-1-0716-2541-5_16
Victoria Tianjing Yan, Arjun Narayanan, Tina Wiegand, Frank Jülicher, Stephan W. Grill\ A Condensate Dynamic Instability Orchestrates Actomyosin Cortex Activation\ Nature. (Aug 17, 2022) \ DOI: 10.1038/s41586-022-05084-3
L. Wetzel, D. Prousalis, F. Julicher, R. Riaz, C. Hoyer, N. Joram, F. Ellinger\ How to Implement Mutual Network Synchronization in the Presence of Large Cross-Coupling Delays\ 2022 Joint Conference of the European Frequency and Time Forum and IEEE International Frequency Control Symposium (EFTF/IFCS) (Aug 15, 2022) \ DOI: 10.1109/eftf/ifcs54560.2022.9850482
Maria Luisa Romero Romero, Cedric Landerer, Jonas Poehls, Agnes Toth-Petroczy\ Phenotypic mutations contribute to protein diversity and shape protein evolution\ Protein Sci; 31(9): e4397 (Aug 13, 2022) \ DOI: 10.1002/pro.43970
Anna L. Gloyn, Mark Ibberson, Piero Marchetti, Alvin C. Powers, Patrik Rorsman, Maike Sander, Michele Solimena\ Every islet matters: improving the impact of human islet research\ Nat Metab 4(8):970–977 (Aug 11, 2022) \ DOI: 10.1038/s42255-022-00607-8
Olof Asplund, Petter Storm, Vikash Chandra, Gad Hatem, Emilia Ottosson-Laakso, Dina Mansour-Aly, Ulrika Krus, Hazem Ibrahim, Emma Ahlqvist, Tiinamaija Tuomi, Erik Renström, Olle Korsgren, Nils Wierup, Mark Ibberson, Michele Solimena, Piero Marchetti, Claes Wollheim, Isabella Artner, Hindrik Mulder, Ola Hansson, Timo Otonkoski, Leif Groop, Rashmi B Prasad\ Islet Gene View—a tool to facilitate islet research\ Life Sci. Alliance 5(12):e202201376 (Aug 10, 2022) \ DOI: 10.26508/lsa.202201376
Falco C M J M van Delf, Alf Månsson, Hillel Kugler, Till Korten, Cordula Reuther, Jingyuan Zhu, Roman Lyttleton, Thomas Blaudeck, Christoph Robert Meinecke, Danny Reuter, Stefan Diez, Heiner Linke\ Roadmap for network-based bio-computation\ Nano Futures 6, 032002 (Aug 9, 2022) \ DOI: 10.1088/2399-1984/ac7d81
Somnath Dutta, Benjamin Russig, Stefan Gumhold\ 3D Point Set Registration based on Hierarchical Descriptors\ JWSCG 30(1-2):44–53 (Aug 9, 2022) \ DOI: 10.24132/jwscg.2022.6
Mirco Bonati, Lucas Daniel Wittwer, Sebastian Aland, Elisabeth Fischer-Friedrich\ On the role of mechanosensitive binding dynamics in the pattern formation of active surfaces\ New J. Phys. 24 073044 (Aug 8, 2022) \ DOI: 10.1088/1367-2630/ac806d
Marie Pochitaloff, Martin Miranda, Mathieu Richard, Atitheb Chaiyasitdhi, Yasuharu Takagi, Wenxiang Cao, Enrique M. De La Cruz, James R. Sellers, Jean-François Joanny, Frank Jülicher, Laurent Blanchoin, Pascal Martin\ Flagella-like beating of actin bundles driven by self-organized myosin waves\ Nat. Phys. (Aug 8, 2022) \ DOI: 10.1038/s41567-022-01688-8
Jonathan Bauermann, Christoph A. Weber, Frank Jülicher\ Energy and Matter Supply for Active Droplets\ Ann. Phys. 2200132. (Aug 3, 2022) \ DOI: 10.1002/andp.202200132
Ioannis Mitroulis, Akrivi Chrysanthopoulou, Georgios Divolis, Charalampos Ioannidis, Maria Ntinopoulou, Athanasios Tasis, Theocharis Konstantinidis, Christina Antoniadou, Natalia Soteriou, George Lallas, Stella Mitka, Mathias Lesche, Andreas Dahl, Stephanie Gembardt, Maria Panopoulou, Paschalis Sideras, Ben Wielockx, Ünal Coskun, Konstantinos Ritis, Panagiotis Skendros\ A gene expression map of host immune response in human brucellosis\ Front. Immunol. 13 (Aug 1, 2022) \ DOI: 10.3389/fimmu.2022.951232
Hidde D. Vuijk, Sophie Klempahn, Holger Merlitz, Jens-Uwe Sommer, Abhinav Sharma\ Active colloidal molecules in activity gradients\ Phys. Rev. E 106(1), 014617 (Jul 29, 2022) \ DOI: 10.1103/physreve.106.014617
Hugo van den Hoek, Nikolai Klena, Mareike A. Jordan, Gonzalo Alvarez Viar, Ricardo D. Righetto, Miroslava Schaffer, Philipp S. Erdmann, William Wan, Stefan Geimer, Jürgen M. Plitzko, Wolfgang Baumeister, Gaia Pigino, Virginie Hamel, Paul Guichard, Benjamin D. Engel\ In situ architecture of the ciliary base reveals the stepwise assembly of intraflagellar transport trains\ Science 377(6605):543–548 (Jul 28, 2022) \ DOI: 10.1126/science.abm6704
Aruã Clayton Da Silva, Teuku Fawzul Akbar, Thomas Edward Paterson, Carsten Werner, Christoph Tondera, Ivan Rusev Minev\ Electrically Controlled Click‐Chemistry for Assembly of Bioactive Hydrogels on Diverse Micro‐ and Flexible Electrodes\ Macromol. Rapid Commun. 43(23) (Jul 27, 2022) \ DOI: 10.1002/marc.202200557
Lucas Wetzel, Dimitrios Prousalis, Rabia Fatima Riaz, Christian Hoyer, Niko Joram, Johannes Fritzsche, Frank Ellinger, Frank Julicher\ Network Synchronization Revisited: Time Delays in Mutually Coupled Oscillators\ IEEE Access 10:80027–80045 (Jul 25, 2022) \ DOI: 10.1109/access.2022.3193490
Yu Yang, Jingyuan Huang, Daniel Dornbusch, Guido Grundmeier, Karim Fahmy, Adrian Keller, David L. Cheung\ Effect of Surface Hydrophobicity on the Adsorption of a Pilus-Derived Adhesin-like Peptide\ Langmuir, 38, 9257-9265 (Jul 23, 2022) \ DOI: 10.1021/acs.langmuir.2c01016
Johannes Fett, Urs Kober, Christian Schwarz, Dirk Habich, Wolfgang Lehner\ Accelerating Parallel Operation for Compacting Selected Elements on GPUs\ JOSS 7(75):4589 (Jul 22, 2022) \ DOI: 10.21105/joss.04589
Florian N. Brünig, Manuel Rammler, Ellen M. Adams, Martina Havenith, Roland R. Netz\ Spectral signatures of excess-proton waiting and transfer-path dynamics in aqueous hydrochloric acid solutions\ Nat Commun 13(1), 4210 (Jul 21, 2022) \ DOI: 10.1038/s41467-022-31700-x
Rouhollah Habibey, Johannes Striebel, Kritika Sharma, Volker Busskamp\ Optogenetic Control of Human Stem Cell-Derived Neurons\ Methods in Molecular Biology 339–360 (Jul 20, 2022) \ DOI: 10.1007/978-1-0716-2329-9_17
Tetsuya Yamamoto, Helmut Schiessel\ Loop extrusion driven volume phase transition of entangled chromosomes\ Biophys J. 121(14):2742-2750. (Jul 19, 2022) \ DOI: 10.1016/j.bpj.2022.06.014
Raoul Schmidt, Hauke Haehne, Laura Hillmann, Jose Casadiego, Dirk Witthaut, Benjamin Schafer, Marc Timme\ Inferring Topology of Networks With Hidden Dynamic Variables\ IEEE Access 10:76682–76692 (Jul 18, 2022) \ DOI: 10.1109/access.2022.3191665
Sandra Heckel, Clemens Bilsing, Martin Wittmann, Thomas Gemming, Lars Büttner, Jürgen Czarske, Juliane Simmchen\ Beyond Janus Geometry: Characterization of Flow Fields around Nonspherical Photocatalytic Microswimmers\ Advanced Science 9(24) (Jul 15, 2022) \ DOI: 10.1002/advs.202105009
Robert Haase, Elnaz Fazeli, David Legland, Michael Doube, Siân Culley, Ilya Belevich, Eija Jokitalo, Martin Schorb, Anna Klemm, Christian Tischer\ A Hitchhiker's guide through the bio‐image analysis software universe\ FEBS Letters 596(19):2472–2485 (Jul 14, 2022) \ DOI: 10.1002/1873-3468.14451
- (Alumni Group) Robert Haase
Karim Fahmy\ Simple Growth–Metabolism Relations Are Revealed by Conserved Patterns of Heat Flow from Cultured Microorganisms\ Microorganisms 10(7):1397 (Jul 12, 2022) \ DOI: 10.3390/microorganisms10071397
Mateusz Susik, Holger Schönborn, Ivo F. Sbalzarini\ Hamiltonian Monte Carlo with strict convergence criteria reduces run-to-run variability in forensic DNA mixture deconvolution\ Forensic Science International: Genetics 60:102744 (Jul 11, 2022) \ DOI: 10.1016/j.fsigen.2022.102744
XIAOZHU ZHANG, MARC TIMME\ Fluctuation response patterns of network dynamics – An introduction\ Eur. J. Appl. Math 34(3):429–466 (Jul 11, 2022) \ DOI: 10.1017/s0956792522000201
Lucas Woltmann, Jonathan Drechsel, Claudio Hartmann, Wolfgang Lehner\ Ingredient-based Forecast of Sold Dish Portions in Campus Canteen Kitchens\ 2022 IEEE 38th International Conference on Data Engineering Workshops (ICDEW) (Jul 8, 2022) \ DOI: 10.1109/icdew55742.2022.00023
Shady Sayed, Olga A. Sidorova, Alexander Hennig, Martina Augsburg, Catherine P. Cortés Vesga, Moustafa Abohawya, Lukas T. Schmitt, Duran Sürün, Daniel E. Stange, Jovan Mircetic, Frank Buchholz\ Efficient Correction of Oncogenic KRAS and TP53 Mutations through CRISPR Base Editing\ Cancer Research 82(17):3002–3015 (Jul 8, 2022) \ DOI: 10.1158/0008-5472.can-21-2519
Lea Happel, D Wenzel, Axel Voigt\ Effects of curvature on epithelial tissue – Coordinated rotational movement and other spatiotemporal arrangements\ EPL 138 67002 (Jul 7, 2022) \ DOI: 10.1209/0295-5075/ac757a
Adrian Zambrano, Giorgio Fracasso, Mengfei Gao, Martina Ugrinic, Dishi Wang, Dietmar Appelhans, Andrew deMello, T-Y. Dora Tang\ Programmable synthetic cell networks regulated by tuneable reaction rates\ Nat Commun 13(1), 3885 (Jul 6, 2022) \ DOI: 10.1038/s41467-022-31471-5
Cheng-Wu Li, Holger Merlitz, Jens-Uwe Sommer\ A nanofluidic system based on cylindrical polymer brushes: how to control the size of nanodroplets\ Soft Matter 18(30):5598–5604 (Jul 6, 2022) \ DOI: 10.1039/d2sm00527a
Jiawei Sun, Jiachen Wu, Song Wu, Ruchi Goswami, Salvatore Girardo, Liangcai Cao, Jochen Guck, Nektarios Koukourakis, Juergen W. Czarske\ Quantitative phase imaging through an ultra-thin lensless fiber endoscope\ Light Sci Appl 11(1), 204 (Jul 5, 2022) \ DOI: 10.1038/s41377-022-00898-2
Nicolas Hauck, Timon Beck, Gheorghe Cojoc, Raimund Schlüßler, Saeed Ahmed, Ivan Raguzin, Martin Mayer, Jonas Schubert, Paul Müller, Jochen Guck, Julian Thiele\ PNIPAAm microgels with defined network architecture as temperature sensors in optical stretchers\ Mater. Adv. 3(15):6179–6190 (Jul 5, 2022) \ DOI: 10.1039/d2ma00296e
Mrityunjoy Kar, Furqan Dar, Timothy J. Welsh, Laura T. Vogel, Ralf Kühnemuth, Anupa Majumdar, Georg Krainer, Titus M. Franzmann, Simon Alberti, Claus A. M. Seidel, Tuomas P. J. Knowles, Anthony A. Hyman, Rohit V. Pappu\ Phase-separating RNA-binding proteins form heterogeneous distributions of clusters in subsaturated solutions\ Proc. Natl. Acad. Sci. U.S.A. 119(28) (Jul 5, 2022) \ DOI: 10.1073/pnas.2202222119
Philip Brandner, Thomas Jankuhn, Simon Praetorius, Arnold Reusken, Axel Voigt\ Finite Element Discretization Methods for Velocity-Pressure and Stream Function Formulations of Surface Stokes Equations\ SIAM J. Sci. Comput. 44(4):A1807–A1832 (Jul 5, 2022) \ DOI: 10.1137/21m1403126
Manan Lalit, Pavel Tomancak, Florian Jug\ EmbedSeg: Embedding-based Instance Segmentation for Biomedical Microscopy Data\ Medical Image Analysis 81:102523 (Jul 4, 2022) \ DOI: 10.1016/j.media.2022.102523
Christian Hoyer, Lucas Wetzel, Dimitris Prousalis, Jens Wagner, Frank Julicher, Frank Ellinger\ Stability Analysis of Mutually Synchronized Spatially Distributed 24 GHz Oscillators\ 2022 IEEE International Instrumentation and Measurement Technology Conference (I2MTC) (Jun 30, 2022) \ DOI: 10.1109/i2mtc48687.2022.9806544
Nikolai Klena, Gaia Pigino\ Structural Biology of Cilia and Intraflagellar Transport\ Annu. Rev. Cell Dev. Biol. 38(1):103–123 (Jun 29, 2022) \ DOI: 10.1146/annurev-cellbio-120219-034238
Rashmiparvathi Keshara, Yung Hae Kim, Anne Grapin-Botton\ Organoid Imaging: Seeing Development and Function\ Annu. Rev. Cell Dev. Biol. 38(1):447–466 (Jun 29, 2022) \ DOI: 10.1146/annurev-cellbio-120320-035146
Pradheebha Surendiran, Christoph Robert Meinecke, Aseem Salhotra, Georg Heldt, Jingyuan Zhu, Alf Månsson, Stefan Diez, Danny Reuter, Hillel Kugler, Heiner Linke, Till Korten\ Solving Exact Cover Instances with Molecular-Motor-Powered Network-Based Biocomputation\ ACS Nanosci. Au 2(5) 396–403 (Jun 23, 2022) \ DOI: 10.1021/acsnanoscienceau.2c00013
Camilo Riquelme-Guzmán, Timon Beck, Sandra Edwards-Jorquera, Raimund Schlüßler, Paul Müller, Jochen Guck, Stephanie Möllmert, Tatiana Sandoval-Guzmán\ In vivoassessment of mechanical properties during axolotl development and regeneration using confocal Brillouin microscopy\ Open Biol. 12(6) (Jun 21, 2022) \ DOI: 10.1098/rsob.220078
Henrike Indrischek, Juliane Hammer, Anja Machate, Nikolai Hecker, Bogdan Kirilenko, Juliana Roscito, Stefan Hans, Caren Norden, Michael Brand, Michael Hiller\ Vision-related convergent gene losses reveal SERPINE3’s unknown role in the eye\ eLife 11:e77999 (Jun 21, 2022) \ DOI: 10.7554/elife.77999
Shada Abuhattum, Petra Kotzbeck, Raimund Schlüßler, Alexandra Harger, Angela Ariza de Schellenberger, Kyoohyun Kim, Joan-Carles Escolano, Torsten Müller, Jürgen Braun, Martin Wabitsch, Matthias Tschöp, Ingolf Sack, Marko Brankatschk, Jochen Guck, Kerstin Stemmer, Anna V. Taubenberger\ Adipose cells and tissues soften with lipid accumulation while in diabetes adipose tissue stiffens\ Sci Rep 12(1), 10325 (Jun 20, 2022) \ DOI: 10.1038/s41598-022-13324-9
Britta Pester, Benjamin Russig, Oliver Winke, Carolin Ligges, Raimund Dachselt, Stefan Gumhold\ Understanding multi-modal brain network data: An immersive 3D visualization approach\ Computers & Graphics 106, 88–97 (Jun 16, 2022) \ Special Section on EuroVA 2021 \ DOI: 10.1016/j.cag.2022.05.024
Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, Christian L. Müller\ Stability selection enables robust learning of differential equations from limited noisy data\ Proc. R. Soc. A. 478(2262) Art. No. 20210916 (Jun 15, 2022) \ DOI: 10.1098/rspa.2021.0916
Aylin Camgöz, Konstantin Okonechnikov, Owen Chapman, Monika Maurmann, Frank Buchholz, Stefan Pfister, Lukas Chavez, Marcel Kool\ Abstract 3886: 3D genome conformation analysis in ST-EPN-ZFTA ependymoma identifies RCOR2 as a potential target\ Cancer Research 82(12_Supplement):3886–3886 (Jun 15, 2022) \ DOI: 10.1158/1538-7445.am2022-3886
Joel Jonsson, Bevan L. Cheeseman, Suryanarayana Maddu, Krzysztof Gonciarz, Ivo F. Sbalzarini\ Parallel Discrete Convolutions on Adaptive Particle Representations of Images\ IEEE Trans. on Image Process. 31:4197–4212 (Jun 14, 2022) \ DOI: 10.1109/tip.2022.3181487
Laura Medina-Ruiz, Robin Bartolini, Gillian J Wilson, Douglas P Dyer, Francesca Vidler, Catherine E Hughes, Fabian Schuette, Samantha Love, Marieke Pingen, Alan James Hayes, Jun Fu, Adrian Francis Stewart, Gerard J Graham\ Analysis of combinatorial chemokine receptor expression dynamics using multi-receptor reporter mice\ eLife 11 (Jun 14, 2022) \ DOI: 10.7554/elife.72418
Mark Leaver, Eduardo Moreno, Merve Kayhan, Angela McGaughran, Christian Rödelsperger, Ralf J. Sommer, Anthony A. Hyman\ Adaptation to environmental temperature in divergent clades of the nematodePristionchus pacificus\ Evolution 76(8):1660–1673 (Jun 13, 2022) \ DOI: 10.1111/evo.14520
Dirk Habich, Johannes Pietrzyk, Alexander Krause, Juliana Hildebrandt, Wolfgang Lehner\ To use or not to use the SIMD gather instruction?\ Data Management on New Hardware (Jun 13, 2022) \ DOI: 10.1145/3533737.3535089
Sihem Amer-Yahia, Sourav S. Bhowmick, Xin Luna Dong, Stratos Idreos, Wolfgang Lehner, Divesh Srivastava\ Publication Culture and Review Processes in the Data Management Community: An Open Discussion\ Proceedings of the 2022 International Conference on Management of Data (Jun 12, 2022) \ DOI: 10.1145/3514221.3528413
Berna Sozen, Deniz Conkar, Jesse V. Veenvliet\ Carnegie in 4D? Stem-cell-based models of human embryo development\ Seminars in Cell & Developmental Biology 131:44–57 (Jun 11, 2022) \ DOI: 10.1016/j.semcdb.2022.05.023
Daxiao Sun, Isabel LuValle-Burke, Karina Pombo-García, Alf Honigmann\ Biomolecular condensates in epithelial junctions\ Current Opinion in Cell Biology 77:102089 (Jun 10, 2022) \ DOI: 10.1016/j.ceb.2022.102089
Mehdi Moghaddamfar, Christian Farber, Norman May, Wolfgang Lehner, Akash Kumar\ FPGA-Based Database Query Processing on Arbitrarily Wide Tables\ 2022 IEEE 30th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM) (Jun 3, 2022) \ DOI: 10.1109/fccm53951.2022.9786091
J. Jiménez de la Morena, P. Conesa, Y.C. Fonseca, F.P. de Isidro-Gómez, D. Herreros, E. Fernández-Giménez, D. Strelak, E. Moebel, T.O. Buchholz, F. Jug, A. Martinez-Sanchez, M. Harastani, S. Jonic, J.J. Conesa, A. Cuervo, P. Losana, I. Sánchez, M. Iceta, L. del Cano, M. Gragera, R. Melero, G. Sharov, D. Castaño-Díez, A. Koster, J.G. Piccirillo, J.L. Vilas, J. Otón, R. Marabini, C.O.S. Sorzano, J.M. Carazo\ ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation\ Journal of Structural Biology 214(3):107872 (Jun 2, 2022) \ DOI: 10.1016/j.jsb.2022.107872
Rana Amini, Archit Bhatnagar, Raimund Schlüßler, Stephanie Möllmert, Jochen Guck, Caren Norden\ Amoeboid-like migration ensures correct horizontal cell layer formation in the developing vertebrate retina\ eLife 11 (May 31, 2022) \ DOI: 10.7554/elife.76408
Leonhard Karsch, Jörg Pawelke, Michael Brand, Stefan Hans, Katalin Hideghéty, Jeannette Jansen, Elisabeth Lessmann, Steffen Löck, Michael Schürer, Rico Schurig, Joao Seco, Emília Rita Szabó, Elke Beyreuther\ Beam pulse structure and dose rate as determinants for the flash effect observed in zebrafish embryo\ Radiother Oncol 173:49–54 (May 30, 2022) \ DOI: 10.1016/j.radonc.2022.05.025
Florian Levet, Virginie Uhlmann, Florian Jug\ Editorial: Methods and Tools for Bioimage Analysis\ Front. Comput. Sci. 4 (May 30, 2022) \ DOI: 10.3389/fcomp.2022.931939
Ruben Lier, Jay Armas, Stefano Bo, Charlie Duclut, Frank Jülicher, Piotr Surówka\ Passive odd viscoelasticity\ Phys. Rev. E 105(5), 054607 (May 26, 2022) \ DOI: 10.1103/physreve.105.054607
Jens-Uwe Sommer, Holger Merlitz, Helmut Schiessel\ Polymer-Assisted Condensation: A Mechanism for Hetero-Chromatin Formation and Epigenetic Memory\ Macromolecules 55, 11, 4841–4851 (May 24, 2022) \ DOI: 10.1021/acs.macromol.2c00244
Marcel Hanke, Daniel Dornbusch, Christoph Hadlich, Andre Rossberg, Niklas Hansen, Guido Grundmeier, Satoru Tsushima, Adrian Keller, Karim Fahmy\ Anion-specific structure and stability of guanidinium-bound DNA origami\ Computational and Structural Biotechnology Journal 20:2611–2623 (May 23, 2022) \ DOI: 10.1016/j.csbj.2022.05.037
Maximilian Clausing, Doreen William, Matthias Preussler, Julia Biedermann, Konrad Grützmann, Susan Richter, Frank Buchholz, Achim Temme, Evelin Schröck, Barbara Klink\ Different Effects of RNAi-Mediated Downregulation or Chemical Inhibition of NAMPT in an Isogenic IDH Mutant and Wild-Type Glioma Cell Model\ IJMS 23(10):5787 (May 21, 2022) \ DOI: 10.3390/ijms23105787
Christian Hoyer, Lucas Wetzel, Dimitris Prousalis, Jens Wagner, Frank Julicher, Frank Ellinger\ Mutual Synchronization of Spatially Distributed 24 GHz Oscillators up to Distances of 500 m\ IEEE Trans. Circuits Syst. II 69(9):3689–3693 (May 20, 2022) \ DOI: 10.1109/tcsii.2022.3176827
Stefan Rothe, Karl-Ludwig Besser, Nektarios Koukourakis, Eduard Jorswieck, Jürgen W. Czarske\ Confidential optical data transmission through multimode fibres based on holographic transmission matrix measurements\ Unconventional Optical Imaging III (May 20, 2022) \ DOI: 10.1117/12.2620317
Johannes Gürtler, Robert Kuschmierz, Jürgen Czarske\ Minimally invasive lensless fiber endoscopy using distal holographic image formation for technical inspections and biomedicine\ Optics and Photonics for Advanced Dimensional Metrology II (May 20, 2022) \ DOI: 10.1117/12.2621131
Tom Glosemeyer, Yazhi Zheng, Julian Lich, Robert Kuschmierz, Jürgen W. Czarske\ Multispectral image reconstruction with neural networks for minimally invasive 3D lensless fiber endoscopy using a diffuser\ Unconventional Optical Imaging III (May 20, 2022) \ DOI: 10.1117/12.2621196
Jiachen Wu, Tijue Wang, Robert Kuschmierz, Ortrud Uckermann, Roberta Galli, Gabriele Schackert, Liangcai Cao, Jürgen W. Czarske\ Learning-based high-resolution lensless fiber bundle imaging for tumor\ Unconventional Optical Imaging III (May 20, 2022) \ DOI: 10.1117/12.2624170
Robert Kuschmierz, Jürgen Czarske\ Minimally invasive computational 3D lensless fiber endomicroscopy\ Optics and Photonics for Advanced Dimensional Metrology II (May 20, 2022) \ DOI: 10.1117/12.2624590
Andrea Auconi, Maja Novak and Benjamin M. Friedrich\ Gradient sensing in Bayesian chemotaxis\ EPL 138 12001 (May 18, 2022) \ DOI: 10.1209/0295-5075/ac6620
Uwe Töpfer, Karla Yanín Guerra-Santillán, Elisabeth Fischer-Friedrich, Christian Dahmann\ Distinct contributions of ECM proteins to basement membrane mechanical properties in Drosophila\ Development 149(10):dev200456 (May 16, 2022) \ DOI: 10.1242/dev.200456
Qian Zhang, Stefan Rothe, Nektarios Koukourakis, Jürgen Czarske\ Learning the matrix of few-mode fibers for high-fidelity spatial mode transmission\ APL Photonics 7(6) (May 16, 2022) \ DOI: 10.1063/5.0088605
Iaroslav Babenko, Benjamin M. Friedrich, Nils Kröger\ Structure and Morphogenesis of the Frustule\ The Molecular Life of Diatoms (eds Falciatore, A., Mock, T.), Springer, pp. 287–312 (online: May 12, 2022) \ DOI: 10.1007/978-3-030-92499-7_11
Nils Kröger\ Biomolecules Involved in Frustule Biogenesis and Function\ The Molecular Life of Diatoms (eds Falciatore, A., Mock, T.), Springer, pp. 313–343 (online: May 12, 2022) \ DOI: 10.1007/978-3-030-92499-7_12
Damian Wollny, Benjamin Vernot, Jie Wang, Maria Hondele, Aram Safrastyan, Franziska Aron, Julia Micheel, Zhisong He, Anthony Hyman, Karsten Weis, J. Gray Camp, T.‐Y. Dora Tang, Barbara Treutlein\ Characterization of RNA content in individual phase-separated coacervate microdroplets\ Nature Communications 13, 2626 (May 12, 2022) \ DOI: 10.1038/s41467-022-30158-1
Marta Zuzic, Johannes Striebel, Julia S. Pawlick, Kritika Sharma, Frank G. Holz, Volker Busskamp\ Gene-independent therapeutic interventions to maintain and restore light sensitivity in degenerating photoreceptors\ Progress in Retinal and Eye Research 90:101065 (May 11, 2022) \ DOI: 10.1016/j.preteyeres.2022.101065
Jiawei Sun, Jiachen Wu, Nektarios Koukourakis, Liangcai Cao, Robert Kuschmierz, Juergen Czarske\ Real-time complex light field generation through a multi-core fiber with deep learning\ Sci Rep 12(1), 7732 (May 11, 2022) \ DOI: 10.1038/s41598-022-11803-7
Fereshteh R. Najafabadi, Mark Leaver, Stephan W. Grill\ Orchestrating nonmuscle myosin II filament assembly at the onset of cytokinesis\ MBoC 33(8) (May 11, 2022) \ DOI: 10.1091/mbc.e21-12-0599
Norbert Stefan, Katrin Sippel, Martin Heni, Andreas Fritsche, Robert Wagner, Carolin E. M. Jakob, Hubert Preißl, Alexander von Werder, Yascha Khodamoradi, Stefan Borgmann, Maria Madeleine Rüthrich, Frank Hanses, Martina Haselberger, Christiane Piepel, Martin Hower, Jürgen vom Dahl, Kai Wille, Christoph Römmele, Janne Vehreschild, Melanie Stecher, Michele Solimena, Michael Roden, Annette Schürmann, Baptist Gallwitz, Martin Hrabe de Angelis, David S. Ludwig, Matthias B. Schulze, Bjoern Erik Ole Jensen, Andreas L. Birkenfeld\ Obesity and Impaired Metabolic Health Increase Risk of COVID-19-Related Mortality in Young and Middle-Aged Adults to the Level Observed in Older People: The LEOSS Registry\ Front. Med. 9 (May 11, 2022) \ DOI: 10.3389/fmed.2022.875430
Volker Busskamp, Sarah Kunze\ Optogenetik und Zellersatz in der Retinologie\ Ophthalmologie 119(9):910–918 (May 10, 2022) \ DOI: 10.1007/s00347-022-01631-5
Matilda Rehn, Anne Wenzel, Anne-Katrine Frank, Mikkel Bruhn Schuster, Sachin Pundhir, Nanna Jørgensen, Kristoffer Vitting-Seerup, Ying Ge, Johan Jendholm, Magali Michaut, Erwin M. Schoof, Tanja Lyholm Jensen, Nicolas Rapin, Russell T. Sapio, Kasper Langebjerg Andersen, Anders H. Lund, Michele Solimena, Martin Holzenberger, Dimitri G. Pestov, Bo Torben Porse\ PTBP1 promotes hematopoietic stem cell maintenance and red blood cell development by ensuring sufficient availability of ribosomal constituents\ Cell Reports 39(6):110793 (May 10, 2022) \ DOI: 10.1016/j.celrep.2022.110793
Azaam Aziz, Dmitriy Karnaushenko, Nektarios Koukourakis, Jurgen W. Czarske, Oliver G. Schmidt, Mariana Medina-Sanchez\ Tracking of Magnetic Micromotors in Confined Channels Through Scattering Tissue\ 2021 IEEE 15th International Conference on Nano/Molecular Medicine & Engineering (NANOMED) (May 9, 2022) \ DOI: 10.1109/nanomed54179.2021.9766491
Pablo Hernández-Malmierca, Dominik Vonficht, Alexandra Schnell, Hannah J. Uckelmann, Alina Bollhagen, Mohamed A.A. Mahmoud, Sophie-Luise Landua, Elise van der Salm, Christine L. Trautmann, Simon Raffel, Florian Grünschläger, Raphael Lutz, Michael Ghosh, Simon Renders, Nádia Correia, Elisa Donato, Karin O. Dixon, Christoph Hirche, Carolin Andresen, Claudia Robens, Paula S. Werner, Tobias Boch, David Eisel, Wolfram Osen, Franziska Pilz, Adriana Przybylla, Corinna Klein, Frank Buchholz, Michael D. Milsom, Marieke A.G. Essers, Stefan B. Eichmüller, Wolf-Karsten Hofmann, Daniel Nowak, Daniel Hübschmann, Michael Hundemer, Christian Thiede, Lars Bullinger, Carsten Müller-Tidow, Scott A. Armstrong, Andreas Trumpp, Vijay K. Kuchroo, Simon Haas\ Antigen presentation safeguards the integrity of the hematopoietic stem cell pool\ Cell Stem Cell 29(5):760–775.e10 (May 5, 2022) \ DOI: 10.1016/j.stem.2022.04.007
David Weik, Lars Grüter, Dirk Räbiger, Sanjay Singh, Tobias Vogt, Sven Eckert, Jürgen Czarske, Lars Büttner\ Ultrasound Localization Microscopy in Liquid Metal Flows\ Applied Sciences 12(9):4517 (Apr 29, 2022) \ DOI: 10.3390/app12094517
Weizhou Luo, Anke Lehmann, Hjalmar Widengren, Raimund Dachselt\ Where Should We Put It? Layout and Placement Strategies of Documents in Augmented Reality for Collaborative Sensemaking\ CHI Conference on Human Factors in Computing Systems (Apr 28, 2022) \ DOI: 10.1145/3491102.3501946
Severin Engert, Konstantin Klamka, Andreas Peetz, Raimund Dachselt\ STRAIDE: A Research Platform for Shape-Changing Spatial Displays based on Actuated Strings\ CHI Conference on Human Factors in Computing Systems (Apr 28, 2022) \ DOI: 10.1145/3491102.3517462
Patrick Reipschläger, Frederik Brudy, Raimund Dachselt, Justin Matejka, George Fitzmaurice, Fraser Anderson\ AvatAR: An Immersive Analysis Environment for Human Motion Data Combining Interactive 3D Avatars and Trajectories\ CHI Conference on Human Factors in Computing Systems (Apr 28, 2022) \ DOI: 10.1145/3491102.3517676
Sylvia J. Gasparini, Karen Tessmer, Miriam Reh, Stephanie Wieneke, Madalena Carido, Manuela Völkner, Oliver Borsch, Anka Swiersy, Marta Zuzic, Olivier Goureau, Thomas Kurth, Volker Busskamp, Günther Zeck, Mike O. Karl, Marius Ader\ Transplanted human cones incorporate into the retina and function in a murine cone degeneration model\ Journal of Clinical Investigation 132(12) (Apr 28, 2022) \ DOI: 10.1172/jci154619
Marcus Inyama Asuquo, Emmanuel Effa, Oluwabukola Gbotosho, Akaninyene Otu, Nicole Toepfner, Soter Ameh, Sruti-Prathivadhi Bhayankaram, Noah Zetocha, Chisom Nwakama, William Egbe, Jochen Guck, Andrew Ekpenyong\ Microfluidic Microcirculation Mimetic as a Tool for the Study of Rheological Characteristics of Red Blood Cells in Patients with Sickle Cell Anemia\ Applied Sciences 12(9):4394 (Apr 27, 2022) \ DOI: 10.3390/app12094394
Liliya Doronina, Graham M. Hughes, Diana Moreno-Santillan, Colleen Lawless, Tadhg Lonergan, Louise Ryan, David Jebb, Bogdan M. Kirilenko, Jennifer M. Korstian, Liliana M. Dávalos, Sonja C. Vernes, Eugene W. Myers, Emma C. Teeling, Michael Hiller, Lars S. Jermiin, Jürgen Schmitz, Mark S. Springer, David A. Ray\ Contradictory Phylogenetic Signals in the Laurasiatheria Anomaly Zone\ Genes 13(5):766 (Apr 26, 2022) \ DOI: 10.3390/genes13050766
Rebecca Bockholt, Shaleen Paschke, Lars Heubner, Bergoi Ibarlucea, Alexander Laupp, Željko Janićijević, Stephanie Klinghammer, Sascha Balakin, Manfred F. Maitz, Carsten Werner, Gianaurelio Cuniberti, Larysa Baraban, Peter Markus Spieth\ Real-Time Monitoring of Blood Parameters in the Intensive Care Unit: State-of-the-Art and Perspectives\ JCM 11(9):2408 (Apr 26, 2022) \ DOI: 10.3390/jcm11092408
Tzer Han Tan, Jifeng Liu, Anne Grapin-Botton\ Mapping and exploring the organoid state space using synthetic biology\ Seminars in Cell & Developmental Biology 141:23–32 (Apr 22, 2022) \ DOI: 10.1016/j.semcdb.2022.04.015
Foram M. Joshi, Gonzalo Alvarez Viar, Gaia Pigino, Hauke Drechsler, Stefan Diez\ Fabrication of high aspect ratio gold nanowires within the microtubule lumen\ Nano Lett. 22(9) 3659–3667 (Apr 21, 2022) \ DOI: 10.1021/acs.nanolett.2c00255
Akiko Nakamura, Yan Fung Wong, Andrea Venturato, Magali Michaut, Seshasailam Venkateswaran, Mithun Santra, Carla Gonçalves, Michael Larsen, Marit Leuschner, Yung Hae Kim, Joshua Brickman, Mark Bradley, Anne Grapin-Botton\ Long-term feeder-free culture of human pancreatic progenitors on fibronectin or matrix-free polymer potentiates β cell differentiation\ Stem Cell Reports 17(5):1215–1228 (Apr 21, 2022) \ DOI: 10.1016/j.stemcr.2022.03.013
Michele Gabriele, Hugo B Brandão, Simon Grosse-Holz, Asmita Jha, Gina M Dailey, Claudia Cattoglio, Tsung-Han S Hsieh, Leonid Mirny, Christoph Zechner, Anders S Hansen\ Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging\ Science, 376(6592):496–501 (Apr 14, 2022) \ DOI: 10.1126/science.abn6583
Anjalie Schlaeppi, Wilson Adams, Robert Haase, Jan Huisken, Ryan B. MacDonald, Kevin W. Eliceiri, Elisabeth C. Kugler\ Meeting in the Middle: Towards Successful Multidisciplinary Bioimage Analysis Collaboration\ Front. Bioinform. 2 (Apr 14, 2022) \ DOI: 10.3389/fbinf.2022.889755
- (Alumni Group) Robert Haase
Felix Schmieder, Rouhollah Habibey, Johannes Striebel, Lars Büttner, Jürgen Czarske, Volker Busskamp\ Tracking connectivity maps in human stem cell–derived neuronal networks by holographic optogenetics\ Life Sci. Alliance 5(7):e202101268 (Apr 13, 2022) \ DOI: 10.26508/lsa.202101268
Tim Thiele, Bergoi Ibarlucea, Teuku Fawzul Akbar, Carsten Werner, Gianaurelio Cuniberti\ StarPEG–heparin biosensors for rapid and portable diagnostics in complex biofluids\ Sens. Diagn. 1(3):558–565 (Apr 12, 2022) \ DOI: 10.1039/d2sd00036a
Carolina Parada, Samhita P. Banavar, Parisa Khalilian, Stephane Rigaud, Arthur Michaut, Yucen Liu, Dennis Manjaly Joshy, Otger Campàs*, Jerome Gros*\ Mechanical feedback defines organizing centers to drive digit emergence\ Dev Cell 57(7) 854–866.e6 (Apr 11, 2022) \ * co-corresponding authors \ DOI: 10.1016/j.devcel.2022.03.004
Alastair W. Skeffington, Marc Gentzel, Andre Ohara, Alexander Milentyev, Christoph Heintze, Lorenz Böttcher, Stefan Görlich, Andrej Shevchenko, Nicole Poulsen, Nils Kröger\ Shedding light on silica biomineralization by comparative analysis of the silica‐associated proteomes from three diatom species\ The Plant Journal 110(6):1700–1716 (Apr 11, 2022) \ DOI: 10.1111/tpj.15765
Sebastian Junge, Felix Schmieder, Philipp Sasse, Jürgen Czarske, Maria Leilani Torres‐Mapa, Alexander Heisterkamp\ Holographic optogenetic stimulation with calcium imaging as an all optical tool for cardiac electrophysiology\ Journal of Biophotonics 15(7) (Apr 9, 2022) \ DOI: 10.1002/jbio.202100352
Andreas Walther, Anne Mackens-Kiani, Julian Eder, Maik Herbig, Christoph Herold, Clemens Kirschbaum, Jochen Guck, Lucas Daniel Wittwer, Katja Beesdo-Baum, Martin Kräter\ Depressive disorders are associated with increased peripheral blood cell deformability: a cross-sectional case-control study (Mood-Morph)\ Transl Psychiatry 12(1), 150 (Apr 8, 2022) \ DOI: 10.1038/s41398-022-01911-3
Anne Grapin-Botton, Barbara Ludwig\ Stem cell-derived β cells go in monkeys\ Cell Stem Cell 29(4):500–502 (Apr 7, 2022) \ DOI: 10.1016/j.stem.2022.03.010
O. Pätzold, K. Dadzis, C. Kirmse, D. Weik, L. Büttner, J. Czarske, A. Charitos\ Model experiments for melt flow in Czochralski growth of silicon\ Journal of Crystal Growth 588:126656 (Apr 6, 2022) \ DOI: 10.1016/j.jcrysgro.2022.126656
Felix Reichel, Martin Kräter, Kevin Peikert, Hannes Glaß, Philipp Rosendahl, Maik Herbig, Alejandro Rivera Prieto, Alexander Kihm, Giel Bosman, Lars Kaestner, Andreas Hermann, Jochen Guck\ Changes in Blood Cell Deformability in Chorea-Acanthocytosis and Effects of Treatment With Dasatinib or Lithium\ Front. Physiol. 13 (Apr 4, 2022) \ DOI: 10.3389/fphys.2022.852946
Giulio Formenti, Arang Rhie, Brian P. Walenz, Françoise Thibaud-Nissen, Kishwar Shafin, Sergey Koren, Eugene W. Myers, Erich D. Jarvis, Adam M. Phillippy\ Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation\ Nat Methods 19(6):696–704 (Mar 31, 2022) \ DOI: 10.1038/s41592-022-01445-y
Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V. Bzikadze, Alla Mikheenko, Mitchell R. Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman, Sergey Aganezov, Savannah J. Hoyt, Mark Diekhans, Glennis A. Logsdon, Michael Alonge, Stylianos E. Antonarakis, Matthew Borchers, Gerard G. Bouffard, Shelise Y. Brooks, Gina V. Caldas, Nae-Chyun Chen, Haoyu Cheng, Chen-Shan Chin, William Chow, Leonardo G. de Lima, Philip C. Dishuck, Richard Durbin, Tatiana Dvorkina, Ian T. Fiddes, Giulio Formenti, Robert S. Fulton, Arkarachai Fungtammasan, Erik Garrison, Patrick G. S. Grady, Tina A. Graves-Lindsay, Ira M. Hall, Nancy F. Hansen, Gabrielle A. Hartley, Marina Haukness, Kerstin Howe, Michael W. Hunkapiller, Chirag Jain, Miten Jain, Erich D. Jarvis, Peter Kerpedjiev, Melanie Kirsche, Mikhail Kolmogorov, Jonas Korlach, Milinn Kremitzki, Heng Li, Valerie V. Maduro, Tobias Marschall, Ann M. McCartney, Jennifer McDaniel, Danny E. Miller, James C. Mullikin, Eugene W. Myers, Nathan D. Olson, Benedict Paten, Paul Peluso, Pavel A. Pevzner, David Porubsky, Tamara Potapova, Evgeny I. Rogaev, Jeffrey A. Rosenfeld, Steven L. Salzberg, Valerie A. Schneider, Fritz J. Sedlazeck, Kishwar Shafin, Colin J. Shew, Alaina Shumate, Ying Sims, Arian F. A. Smit, Daniela C. Soto, Ivan Sović, Jessica M. Storer, Aaron Streets, Beth A. Sullivan, Françoise Thibaud-Nissen, James Torrance, Justin Wagner, Brian P. Walenz, Aaron Wenger, Jonathan M. D. Wood, Chunlin Xiao, Stephanie M. Yan, Alice C. Young, Samantha Zarate, Urvashi Surti, Rajiv C. McCoy, Megan Y. Dennis, Ivan A. Alexandrov, Jennifer L. Gerton, Rachel J. O’Neill, Winston Timp, Justin M. Zook, Michael C. Schatz, Evan E. Eichler, Karen H. Miga, Adam M. Phillippy\ The complete sequence of a human genome\ Science 376(6588):44–53 (Mar 31, 2022) \ DOI: 10.1126/science.abj6987
Shada Abuhattum, Hui-Shun Kuan, Paul Müller, Jochen Guck, Vasily Zaburdaev\ Unbiased retrieval of frequency-dependent mechanical properties from noisy time-dependent signals\ Biophysical Reports 2(3):100054 (Mar 30, 2022) \ DOI: 10.1016/j.bpr.2022.100054
Huw Colin‐York, John Heddleston, Eric Wait, Narain Karedla, Michael deSantis, Satya Khuon, Teng‐Leong Chew, Ivo F. Sbalzarini, Marco Fritzsche\ Quantifying Molecular Dynamics within Complex Cellular Morphologies using LLSM‐FRAP\ Small Methods 6(6) (Mar 28, 2022) \ DOI: 10.1002/smtd.202200149
Ralf Zimmermann, Jérôme F.L. Duval, Carsten Werner, James D. Sterling\ Quantitative insights into electrostatics and structure of polymer brushes from microslit electrokinetic experiments and advanced modelling of interfacial electrohydrodynamics\ Current Opinion in Colloid & Interface Science 59:101590 (Mar 28, 2022) \ DOI: 10.1016/j.cocis.2022.101590
Clemens Bilsing, Hannes Radner, Sebastian Burgmann, Jürgen Czarske, Lars Büttner\ 3D Imaging with Double-Helix Point Spread Function and Dynamic Aberration Correction Using a Deformable Mirror\ Optics and Lasers in Engineering 154:107044 (Mar 24, 2022) \ DOI: 10.1016/j.optlaseng.2022.107044
Charlie Duclut, Joris Paijmans, Mandar M. Inamdar, Carl D. Modes, Frank Jülicher\ Active T1 Transitions in Cellular Networks\ Eur. Phys. J. E. 45(29) (Mar 23, 2022) \ DOI: 10.1140/epje/s10189-022-00175-5
Suhrid Ghosh, Anna Körte, Giulia Serafini, Vinca Yadav, Jonathan Rodenfels\ Developmental energetics: Energy expenditure, budgets and metabolism during animal embryogenesis\ Seminars in Cell & Developmental Biology 138:83–93 (Mar 19, 2022) \ DOI: 10.1016/j.semcdb.2022.03.009
Xiaochun Xiong, Alan Blakely, Jin Hwan Kim, John G. Menting, Ingmar B. Schäfer, Heidi L. Schubert, Rahul Agrawal, Theresia Gutmann, Carlie Delaine, Yi Wolf Zhang, Gizem Olay Artik, Allanah Merriman, Debbie Eckert, Michael C. Lawrence, Ünal Coskun, Simon J. Fisher, Briony E. Forbes, Helena Safavi-Hemami, Christopher P. Hill, Danny Hung-Chieh Chou\ Symmetric and asymmetric receptor conformation continuum induced by a new insulin\ Nat Chem Biol 18(5):511–519 (Mar 14, 2022) \ DOI: 10.1038/s41589-022-00981-0
Li Ding, Lukas Theo Schmitt, Melanie Brux, Duran Sürün, Martina Augsburg, Felix Lansing, Jovan Mircetic, Mirko Theis, Frank Buchholz\ DNA methylation–independent long-term epigenetic silencing with dCRISPR/Cas9 fusion proteins\ Life Sci. Alliance 5(6):e202101321 (Mar 14, 2022) \ DOI: 10.26508/lsa.202101321
Charlie Duclut, Aboutaleb Amiri, Joris Paijmans, Frank Jülicher\ Coarse-grained curvature tensor on polygonal surfaces\ SciPost Phys. Core 5, 011 (Mar 11, 2022) \ DOI: 10.21468/SciPostPhysCore.5.1.011
Patrick Heisterkamp, Oliver Borsch, Nundehui Diaz Lezama, Sylvia Gasparini, Adeeba Fathima, Livia S. Carvalho, Felix Wagner, Mike O. Karl, Michael Schlierf, Marius Ader\ Evidence for endogenous exchange of cytoplasmic material between a subset of cone and rod photoreceptors within the adult mammalian retina via direct cell-cell connections\ Experimental Eye Research 219:109033 (Mar 11, 2022) \ DOI: 10.1016/j.exer.2022.109033
Nektarios Koukourakis, Felix Wagner, Stefan Rothe, Mike O. Karl, Jürgen W. Czarske\ Investigation of human organoid retina with digital holographic transmission matrix measurements\ gxjzz 3(2):1 (Mar 11, 2022) \ DOI: 10.37188/lam.2022.023
Tyler S. Harmon and Frank Jülicher\ Molecular Assembly Lines in Active Droplets\ Phys. Rev. Lett. 128, 108102 (Mar 9, 2022) \ DOI: 10.1103/PhysRevLett.128.108102
Kamran Hosseini, Palina Trus, Annika Frenzel, Carsten Werner, Elisabeth Fischer-Friedrich\ Skin epithelial cells change their mechanics and proliferation upon snail-mediated EMT signalling\ Soft Matter 18, 2585-2596 (Mar 8, 2022) \ DOI: 10.1039/D2SM00159D
H. P. Jain, D. Wenzel, A. Voigt\ Impact of contact inhibition on collective cell migration and proliferation\ Phys. Rev. E 105(3), 034402 (Mar 7, 2022) \ DOI: 10.1103/physreve.105.034402
Marcel Hanke, Niklas Hansen, Ruiping Chen, Guido Grundmeier, Karim Fahmy, Adrian Keller\ Salting-Out of DNA Origami Nanostructures by Ammonium Sulfate\ IJMS 23(5):2817 (Mar 7, 2022) \ DOI: 10.3390/ijms23052817
Shada Abuhattum, Dominic Mokbel, Paul Müller, Despina Soteriou, Jochen Guck, Sebastian Aland\ An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves\ iScience 25(4):104016 (Mar 5, 2022) \ DOI: 10.1016/j.isci.2022.104016
Robert Kuschmierz, Julian Lich, Tom Glosemeyer, Elias Scharf, Jürgen W. Czarske\ Minimally invasive 3D endoscopy using diffractive optical elements and deep learning\ Endoscopic Microscopy XVII (Mar 4, 2022) \ DOI: 10.1117/12.2606838
Hélène Vignes, Christina Vagena-Pantoula, Mangal Prakash, Hajime Fukui, Caren Norden, Naoki Mochizuki, Florian Jug, Julien Vermot\ Extracellular mechanical forces drive endocardial cell volume decrease during zebrafish cardiac valve morphogenesis\ Developmental Cell 57(5):598–609.e5 (Mar 3, 2022) \ DOI: 10.1016/j.devcel.2022.02.011
Catarina R. Oliveira, Dunja Knapp, Ahmed Elewa, Tobias Gerber, Sandra G. Gonzalez Malagon, Phillip B. Gates, Hannah E. Walters, Andreas Petzold, Hernan Arce, Rodrigo C. Cordoba, Elaiyaraja Subramanian, Osvaldo Chara, Elly M. Tanaka, András Simon, Maximina H. Yun\ Tig1 regulates proximo-distal identity during salamander limb regeneration\ Nat Commun 3;13(1):1141 (Mar 3, 2022) \ DOI: 10.1038/s41467-022-28755-1
Olga Alexandra Sidorova, Shady Sayed, Maciej Paszkowski-Rogacz, Michael Seifert, Aylin Camgöz, Ingo Roeder, Martin Bornhäuser, Christian Thiede, Frank Buchholz\ RNAi-Mediated Screen of Primary AML Cells Nominates MDM4 as a Therapeutic Target in NK-AML with DNMT3A Mutations\ Cells 11(5):854 (Mar 2, 2022) \ DOI: 10.3390/cells11050854
Roman Renger, Jose A. Morin, Regis Lemaitre, Martine Ruer-Gruss, Frank Jülicher, Andreas Hermann, Stephan W. Grill\ Co-condensation of Proteins with Single- and Double-stranded DNA\ Proc. Natl. Acad. Sci. USA 119(10), e2107871119 (Mar 1, 2022) \ DOI: 10.1073/pnas.2107871119
Ben Newland, Johannes Starke, Chiara Bastiancich, Diana P. N. Gonçalves, Laura J. Bray, Wenxin Wang, Carsten Werner\ Well-Defined Polyethylene Glycol Microscale Hydrogel Blocks Containing Gold Nanorods for Dual Photothermal and Chemotherapeutic Therapy\ Pharmaceutics 14(3):551 (Mar 1, 2022) \ DOI: 10.3390/pharmaceutics14030551
Neharika Chamachi, Andreas Hartmann, Mai Quynh Ma , Anna Svirina, Georg Krainer, Michael Schlierf\ Chaperones Skp and SurA dynamically expand unfolded OmpX and synergistically disassemble oligomeric aggregates\ PNAS 119 (9) e2118919119 (Feb 25, 2022) \ DOI: 10.1073/pnas.2118919119
Felix Schmieder, Lars Büttner, Tony Hanitzsch, Volker Busskamp, Jürgen W. Czarske\ Two-Wavelength Computational Holography for Aberration-Corrected Simultaneous Optogenetic Stimulation and Inhibition of In Vitro Biological Samples\ Applied Sciences 12(5):2283 (Feb 22, 2022) \ DOI: 10.3390/app12052283
Kyoohyun Kim, Vamshidhar R. Gade, Teymuras V. Kurzchalia, Jochen Guck\ Quantitative imaging of Caenorhabditis elegans dauer larvae during cryptobiotic transition\ Biophysical Journal 121(7):1219–1229 (Feb 19, 2022) \ DOI: 10.1016/j.bpj.2022.02.031
Veit Krause, Axel Voigt\ Deformable active nematic particles and emerging edge currents in circular confinements\ Eur. Phys. J. E 45, 14 (Feb 17, 2022) \ DOI: 10.1140/epje/s10189-022-00162-w
Suryanarayana Maddu, Dominik Sturm, Christian L. Müller and Ivo F. Sbalzarini\ Inverse Dirichlet weighting enables reliable training of physics informed neural networks\ Machine Learning: Science and Technology, Volume 3, Number 1 (Feb 15, 2022) \ DOI: 10.1088/2632-2153/ac3712
Louise Fritsche, Julia Hummel, Robert Wagner, Dorina Löffler, Julia Hartkopf, Jürgen Machann, Johannes Hilberath, Konstantinos Kantartzis, Peter Jakubowski, Jan Pauluschke-Fröhlich, Sara Brucker, Sebastian Hörber, Hans-Ulrich Häring, Michael Roden, Annette Schürmann, Michele Solimena, Martin Hrabe de Angelis, Andreas Peter, Andreas L Birkenfeld, Hubert Preissl, Andreas Fritsche, Martin Heni\ The German Gestational Diabetes Study (PREG), a prospective multicentre cohort study: rationale, methodology and design\ BMJ Open 12(2):e058268 (Feb 15, 2022) \ DOI: 10.1136/bmjopen-2021-058268
Juan M Iglesias-Artola, Björn Drobot, Mrityunjoy Kar, Anatol Fritsch, Hannes Mutschler, T-Y Dora Tang, Moritz Kreysing\ Charge-density reduction promotes ribozyme activity in RNA-peptide coacervates via RNA fluidization and magnesium partitioning\ Nature Chemistry 2022 (Feb 14, 2022) \ DOI: 10.1038/s41557-022-00890-8
P. S. Burada, R. Maity, F. Jülicher\ Hydrodynamics of chiral squirmers\ Phys. Rev. E 105(2), 024603 (Feb 14, 2022) \ DOI: 10.1103/physreve.105.024603
Gert Rapp, Constantin van Ingen, Elena Erben, Nicola Maghelli, Moritz Kreysing, Florian Huhn\ Focused light induced cytoplasmatic streaming (FLUCS): non-invasive microscopic flow fields and their applications\ Biophysical Journal 121(3):426a (Feb 11, 2022) \ DOI: 10.1016/j.bpj.2021.11.645
Maria Romanova-Michaelides, Zena Hadjivasiliou, Daniel Aguilar-Hidalgo, Dimitris Basagiannis, Carole Seum, Marine Dubois, Frank Jülicher, Marcos Gonzalez-Gaitan\ Morphogen gradient scaling by recycling of intracellular Dpp\ Nature 602, 287–293 (Feb 10, 2022) \ DOI: 10.1038/s41586-021-04346-w
Benjamin A. Dalton, David Oriola, Franziska Decker, Frank Jülicher, Jan Brugués\ A Gelation Transition Enables the Self-organization of Bipolar Metaphase Spindles\ Nature Physics 18, 323–331 (Feb 10, 2022) \ DOI: 10.1038/s41567-021-01467-x
David Rettke, Christian Danneberg, Talika Alina Neuendorf, Sebastian Kühn, Jens Friedrichs, Nicolas Hauck, Carsten Werner, Julian Thiele, Tilo Pompe\ Microfluidics-assisted synthesis and functionalization of monodisperse colloidal hydrogel particles for optomechanical biosensors\ J. Mater. Chem. B 10(10):1663–1674 (Feb 10, 2022) \ DOI: 10.1039/d1tb02798k
Johannes Mey, Sebastian Ebert, Tianfang Lin, Giang T. Nguyen, Stefan Gumhold, Uwe Asmann\ Teaching Distributed and Heterogeneous Robotic Cells\ 2022 IEEE 19th Annual Consumer Communications & Networking Conference (CCNC) (Feb 10, 2022) \ DOI: 10.1109/ccnc49033.2022.9700686
Matthias Arzt, Joran Deschamps, Christopher Schmied, Tobias Pietzsch, Deborah Schmidt, Pavel Tomancak, Robert Haase, Florian Jug\ LABKIT: Labeling and Segmentation Toolkit for Big Image Data\ Front. Comput. Sci. 4 (Feb 10, 2022) \ DOI: 10.3389/fcomp.2022.777728
- Pavel Tomancak
- (Alumni Group) Robert Haase
- (Alumni Group) Florian Jug
Yong Xu, Michelle Patino Gaillez, Kai Zheng, Dagmar Voigt, Meiying Cui, Thomas Kurth, Lingfei Xiao, Rebecca Rothe, Sandra Hauser, Pao-Wan Lee, Robert Wieduwild, Weilin Lin, Martin Bornhäuser, Jens Pietzsch, Aldo R. Boccaccini, Yixin Zhang\ A Self-Assembled Matrix System for Cell-Bioengineering Applications in Different Dimensions, Scales, and Geometries\ Small. 18, 13 (Feb 8, 2022) \ DOI: 10.1002/smll.202104758
Barbara Scalvini, Helmut Schiessel, Anatoly Golovnev, Alireza Mashaghi\ Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling\ iScience 25(3):103866 (Feb 5, 2022) \ DOI: 10.1016/j.isci.2022.103866
Jose A. Morin, Sina Wittmann, Sandeep Choubey, Adam Klosin, Stefan Golfier, Anthony A. Hyman, Frank Jülicher, Stephan W. Grill\ Sequence-dependent Surface Condensation of a Pioneer Transcription Factor on DNA\ Nat. Phys. (Feb 3, 2022) \ DOI: 10.1038/s41567-021-01462-2
M. K. L. N. Sikosana, A. Ruland, C. Werner, L. D. Renner\ Combining Microscopy Assays of Bacteria-Surface Interactions To Better Evaluate Antimicrobial Polymer Coatings\ Appl Environ Microbiol 88(6) (Feb 2, 2022) \ DOI: 10.1128/aem.02241-21
Juliane Hammer, Paul Röppenack, Sarah Yousuf, Christian Schnabel, Anke Weber, Daniela Zöller, Edmund Koch, Stefan Hans, Michael Brand\ Visual Function is Gradually Restored During Retina Regeneration in Adult Zebrafish\ Front. Cell Dev. Biol. 9 (Feb 1, 2022) \ DOI: 10.3389/fcell.2021.831322
Benedikt Krug, Nektarios Koukourakis, Jochen Guck, Jürgen Czarske\ Nonlinear microscopy using impulsive stimulated Brillouin scattering for high-speed elastography\ Opt. Express 30(4):4748 (Jan 31, 2022) \ DOI: 10.1364/oe.449980
Colin Jackson, Agnes Toth-Petroczy, Rachel Kolodny, Florian Hollfelder, Monika Fuxreiter, Shina Caroline Lynn Kamerlin, Nobuhiko Tokuriki\ Adventures on the Routes of Protein Evolution—In Memoriam Dan Salah Tawfik (1955–2021)\ Journal of Molecular Biology 434(7):167462 (Jan 29, 2022) \ DOI: 10.1016/j.jmb.2022.167462
Sebastian Burgmann, Veronika Krämer, Michael Dues, Jonas Steinbock, Lars Büttner, Juergen Czarske, Uwe Janoske\ Flow-measurements in the wake of an oscillating sessile droplet using laser-Doppler velocity profile sensor\ tm - Technisches Messen 89(3):178–188 (Jan 28, 2022) \ DOI: 10.1515/teme-2021-0119
Sebastian Hempel, Florian Oehme, Florian Ehehalt, Michele Solimena, Fiona Kolbinger, Andreas Bogner, Thilo Welsch, Jürgen Weitz, Marius Distler\ The Impact of Pancreatic Head Resection on Blood Glucose Homeostasis in Patients with Chronic Pancreatitis\ JCM 11(3):663 (Jan 28, 2022) \ DOI: 10.3390/jcm11030663
Kang Du, Martin Pippel, Susanne Kneitz, Romain Feron, Irene da Cruz, Sylke Winkler, Brigitta Wilde, Edgar G. Avila Luna, Gene Myers, Yann Guiguen, Constantino Macias Garcia, Manfred Schartl\ Genome biology of the darkedged splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation\ Genome Res. 32(3):583–594 (Jan 26, 2022) \ DOI: 10.1101/gr.275826.121
Courtney W Hanna, Jiahao Huang, Christian Belton, Susanne Reinhardt, Andreas Dahl, Simon Andrews, A Francis Stewart, Andrea Kranz, Gavin Kelsey\ Loss of histone methyltransferase SETD1B in oogenesis results in the redistribution of genomic histone 3 lysine 4 trimethylation\ Nucleic Acids Research 50(4):1993–2004 (Jan 25, 2022) \ DOI: 10.1093/nar/gkac051
Carla Guillén-Pingarrón, Pedro M. Guillem-Gloria, Anjali Soni, Gloria Ruiz-Gómez, Martina Augsburg, Frank Buchholz, Massimiliano Anselmi, M. Teresa Pisabarro\ Conformational dynamics promotes disordered regions from function-dispensable to essential in evolved site-specific DNA recombinases\ Computational and Structural Biotechnology Journal 20:989–1001 (Jan 22, 2022) \ DOI: 10.1016/j.csbj.2022.01.010
Kyoohyun Kim, Abin Biswas, Omar Muñoz Cárdenas, Simone Reber, Vasily Zaburdaev, Jochen Guck\ Optical diffraction tomography for studying the mass density difference between nucleus and cytoplasm\ Quantitative Phase Imaging VIII (Jan 21, 2022) \ DOI: 10.1117/12.2608692
Johanna Grinat, Frauke Kosel, Neha Goveas, Andrea Kranz, Dimitra Alexopoulou, Klaus Rajewsky, Michael Sigal, A Francis Stewart, Julian Heuberger\ Epigenetic modifier balances Mapk and Wnt signalling in differentiation of goblet and Paneth cells\ Life Sci. Alliance 5(4):e202101187 (Jan 21, 2022) \ DOI: 10.26508/lsa.202101187
Cordula Reuther, Paula Santos-Otte, Rahul Grover, Georg Heldt, Günther Woehlke, Stefan Diez\ Multiplication of Motor-driven Microtubules for Nanotechnological Applications\ Nano Lett. 22(3) 926–934 (Jan 20, 2022) \ DOI: 10.1021/acs.nanolett.1c03619
Felix Lansing, Liliya Mukhametzyanova, Teresa Rojo-Romanos, Kentaro Iwasawa, Masaki Kimura, Maciej Paszkowski-Rogacz, Janet Karpinski, Tobias Grass, Jan Sonntag, Paul Martin Schneider, Ceren Günes, Jenna Hoersten, Lukas Theo Schmitt, Natalia Rodriguez-Muela, Ralf Knöfler, Takanori Takebe, Frank Buchholz\ Correction of a Factor VIII genomic inversion with designer-recombinases\ Nat Commun 13(1), 422 (Jan 20, 2022) \ DOI: 10.1038/s41467-022-28080-7
Lars Gruter, Richard Nauber, Jurgen W. Czarske\ Ultrasonic Bubble Imaging in Molten Salt Using a Multi-Mode Waveguide and Time Reversal\ IEEE Trans. Instrum. Meas. 71:1–10 (Jan 20, 2022) \ DOI: 10.1109/tim.2022.3144739
Maik Herbig, Karen Tessmer, Martin Nötzel, Ahsan Ahmad Nawaz, Tiago Santos-Ferreira, Oliver Borsch, Sylvia J. Gasparini, Jochen Guck, Marius Ader\ Label-free imaging flow cytometry for analysis and sorting of enzymatically dissociated tissues\ Sci Rep 12(1), 963 (Jan 19, 2022) \ DOI: 10.1038/s41598-022-05007-2
Anton Solovev, Benjamin M. Friedrich\ Synchronization in cilia carpets and the Kuramoto model with local coupling: Breakup of global synchronization in the presence of noise\ Chaos 32, 013124 (Jan 19, 2022) \ DOI: 10.1063/5.0075095
Maik Herbig, Angela Jacobi, Manja Wobus, Heike Weidner, Anna Mies, Martin Kräter, Oliver Otto, Christian Thiede, Marie‑Theresa Weickert, Katharina S. Götze, Martina Rauner, Lorenz C. Hofbauer, Martin Bornhäuser, Jochen Guck, Marius Ader, Uwe Platzbecker, Ekaterina Balaian\ Machine learning assisted real-time deformability cytometry of CD34+ cells allows to identify patients with myelodysplastic syndromes\ Sci Rep 12(1), 870 (Jan 18, 2022) \ DOI: 10.1038/s41598-022-04939-z
Harris A. Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, Miklós Bálint, Katharine B. Barker, Bridget Baumgartner, Katherine Belov, Giorgio Bertorelle, Mark L. Blaxter, Jing Cai, Nicolette D. Caperello, Keith Carlson, Juan Carlos Castilla-Rubio, Shu-Miaw Chaw, Lei Chen, Anna K. Childers, Jonathan A. Coddington, Dalia A. Conde, Montserrat Corominas, Keith A. Crandall, Andrew J. Crawford, Federica DiPalma, Richard Durbin, ThankGod E. Ebenezer, Scott V. Edwards, Olivier Fedrigo, Paul Flicek, Giulio Formenti, Richard A. Gibbs, M. Thomas P. Gilbert, Melissa M. Goldstein, Jennifer Marshall Graves, Henry T. Greely, Igor V. Grigoriev, Kevin J. Hackett, Neil Hall, David Haussler, Kristofer M. Helgen, Carolyn J. Hogg, Sachiko Isobe, Kjetill Sigurd Jakobsen, Axel Janke, Erich D. Jarvis, Warren E. Johnson, Steven J. M. Jones, Elinor K. Karlsson, Paul J. Kersey, Jin-Hyoung Kim, W. John Kress, Shigehiro Kuraku, Mara K. N. Lawniczak, James H. Leebens-Mack, Xueyan Li, Kerstin Lindblad-Toh, Xin Liu, Jose V. Lopez, Tomas Marques-Bonet, Sophie Mazard, Jonna A. K. Mazet, Camila J. Mazzoni, Eugene W. Myers, Rachel J. O’Neill, Sadye Paez, Hyun Park, Gene E. Robinson, Cristina Roquet, Oliver A. Ryder, Jamal S. M. Sabir, H. Bradley Shaffer, Timothy M. Shank, Jacob S. Sherkow, Pamela S. Soltis, Boping Tang, Leho Tedersoo, Marcela Uliano-Silva, Kun Wang, Xiaofeng Wei, Regina Wetzer, Julia L. Wilson, Xun Xu, Huanming Yang, Anne D. Yoder, Guojie Zhang\ The Earth BioGenome Project 2020: Starting the clock\ Proc. Natl. Acad. Sci. U.S.A. 119(4) (Jan 18, 2022) \ DOI: 10.1073/pnas.2115635118
Mara K. N. Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, John M. Archibald, William J. Baker, Katherine Belov, Mark L. Blaxter, Tomas Marques Bonet, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Andrew J. Crawford, Robert P. Davey, Federica Di Palma, Qi Fang, Wilfried Haerty, Neil Hall, Katharina J. Hoff, Kerstin Howe, Erich D. Jarvis, Warren E. Johnson, Rebecca N. Johnson, Paul J. Kersey, Xin Liu, Jose Victor Lopez, Eugene W. Myers, Olga Vinnere Pettersson, Adam M. Phillippy, Monica F. Poelchau, Kim D. Pruitt, Arang Rhie, Juan Carlos Castilla-Rubio, Sunil Kumar Sahu, Nicholas A. Salmon, Pamela S. Soltis, David Swarbreck, Françoise Thibaud-Nissen, Sibo Wang, Jill L. Wegrzyn, Guojie Zhang, He Zhang, Harris A. Lewin, Stephen Richards\ Standards recommendations for the Earth BioGenome Project\ Proc. Natl. Acad. Sci. U.S.A. 119(4) (Jan 18, 2022) \ DOI: 10.1073/pnas.2115639118
Dennis Pohle, Stefan Rothe, Nektarios Koukourakis, Jürgen Czarske\ Surveillance of few-mode fiber-communication channels with a single hidden layer neural network\ Opt. Lett. 47(5):1275 (Jan 14, 2022) \ DOI: 10.1364/ol.445885
Juliana Hildebrandt, Andre Berthold, Dirk Habich, Wolfgang Lehner\ LCTL: Lightweight Compression Template Library\ 2021 IEEE International Conference on Big Data (Big Data) (Jan 13, 2022) \ DOI: 10.1109/bigdata52589.2021.9671706
Timothy J. Welsh, Georg Krainer, Jorge R. Espinosa, Jerelle A. Joseph, Akshay Sridhar, Marcus Jahnel, William E. Arter, Kadi L. Saar, Simon Alberti, Rosana Collepardo-Guevara, Tuomas P. J. Knowles\ Surface Electrostatics Govern the Emulsion Stability of Biomolecular Condensates\ Nano Lett. 22(2):612–621 (Jan 10, 2022) \ DOI: 10.1021/acs.nanolett.1c03138
- Simon Alberti
- Marcus Jahnel
Katharina Schmidt, Nektarios Koukourakis, Jürgen Czarske\ Assignment of Focus Position with Convolutional Neural Networks in Adaptive Lens Based Axial Scanning for Confocal Microscopy\ Applied Sciences 12(2):661 (Jan 10, 2022) \ DOI: 10.3390/app12020661
Raimund Schlüßler, Kyoohyun Kim, Martin Nötzel, Anna Taubenberger, Shada Abuhattum, Timon Beck, Paul Müller, Shovamaye Maharana, Gheorghe Cojoc, Salvatore Girardo, Andreas Hermann, Simon Alberti, Jochen Guck\ Correlative all-optical quantification of mass density and mechanics of subcellular compartments with fluorescence specificity\ eLife 11 (Jan 10, 2022) \ DOI: 10.7554/elife.68490
Anton Solovev, Benjamin M Friedrich\ Synchronization in cilia carpets: multiple metachronal waves are stable, but one wave dominates\ New J. Phys. 24(1):013015 (Jan 7, 2022) \ DOI: 10.1088/1367-2630/ac2ae4
David T. Gonzales, Naresh Yandrapalli, Tom Robinson, Christoph Zechner, T-Y. Dora Tang\ Cell-Free Gene Expression Dynamics in Synthetic Cell Populations\ ACS Synth Biol 11(1):205–215 (Jan 4, 2022) \ DOI: 10.1021/acssynbio.1c00376
Florian Bürkle, Jürgen Czarske, Lars Büttner\ Simultaneous velocity profile and temperature profile measurements in microfluidics\ Flow Measurement and Instrumentation 83:102106 (Jan 1, 2022) \ DOI: 10.1016/j.flowmeasinst.2021.102106
Michael Nestler, Axel Voigt\ Active Nematodynamics on Curved Surfaces – The Influence of Geometric Forces on Motion Patterns of Topological Defects\ Communications in Computational Physics, Vol. 31 (Jan 2022) \ DOI: 10.4208/CICP.OA-2021-0206
2021
247 publication(s) listed
Frederic Carsten Schmeel, Asadeh Lakghomi, Nils Christian Lehnen, Robert Haase, Mohammed Banat, Johannes Wach, Nikolaus Handke, Hartmut Vatter, Alexander Radbruch, Ulrike Attenberger, Julian Alexander Luetkens\ Proton Density Fat Fraction Spine MRI for Differentiation of Erosive Vertebral Endplate Degeneration and Infectious Spondylitis\ Diagnostics 12(1):78 (Dec 31, 2021) \ DOI: 10.3390/diagnostics12010078
- (Alumni Group) Robert Haase
Sara Vanessa Bernhard, Katarzyna Seget-Trzensiok, Christian Kuffer, Dragomir B. Krastev, Lisa-Marie Stautmeister, Mirko Theis, Kristina Keuper, Jan-Eric Boekenkamp, Maik Kschischo, Frank Buchholz, Zuzana Storchova\ Loss of USP28 and SPINT2 expression promotes cancer cell survival after whole genome doubling\ Cell Oncol. 45(1):103–119 (Dec 28, 2021) \ DOI: 10.1007/s13402-021-00654-5
Sadra Bakhshandeh, Carsten Werner, Peter Fratzl, Amaia Cipitria\ Microenvironment-mediated cancer dormancy: Insights from metastability theory\ Proc. Natl. Acad. Sci. U.S.A. 119(1) (Dec 23, 2021) \ DOI: 10.1073/pnas.2111046118
Lucas Woltmann, Peter Volk, Michael Dinzinger, Lukas Gräf, Sebastian Strasser, Johannes Schildgen, Claudio Hartmann, Wolfgang Lehner\ Data Science Meets High-Tech Manufacturing – The BTW 2021 Data Science Challenge\ Datenbank Spektrum 22(1):5–10 (Dec 21, 2021) \ DOI: 10.1007/s13222-021-00398-4
Jesse V. Veenvliet, Pierre-François Lenne, David A. Turner, Iftach Nachman, Vikas Trivedi\ Sculpting with stem cells: how models of embryo development take shape\ Development 148 (24): dev192914 (Dec 15, 2021) \ DOI: 10.1242/dev.192914
Karl B. Hoffmann, Ivo F. Sbalzarini\ Estimation of unordered core size using a robustness measure for topological defects in discretized orientation and vector fields\ Proc. Appl. Math. Mech., 21(1): e202100105 (Dec 14, 2021) \ DOI: 10.1002/pamm.202100105
Juliane Valtin, Stephan Behrens, Manfred F. Maitz, Florian Schmieder, Frank Sonntag, Carsten Werner\ A modular in vitro flow model to analyse blood-surface interactions under physiological conditions\ Current Directions in Biomedical Engineering 7(2):171–174 (Dec 10, 2021) \ DOI: 10.1515/cdbme-2021-2044
Prasath Paramasivam, Christian Franke, Martin Stöter, Andreas Höijer, Stefano Bartesaghi, Alan Sabirsh, Lennart Lindfors, Marianna Yanez Arteta, Anders Dahlén, Annette Bak, Shalini Andersson, Yannis Kalaidzidis, Marc Bickle, Marino Zerial\ Endosomal escape of delivered mRNA from endosomal recycling tubules visualized at the nanoscale\ J Cell Biol, 221 (2): e202110137. (Dec 9, 2021) \ DOI: 10.1083/jcb.202110137
Robert Kuschmierz, Elias Scharf, David F. Ortegón-González, Tom Glosemeyer, Jürgen W. Czarske\ Ultra-thin 3D lensless fiber endoscopy using diffractive optical elements and deep neural networks\ Light: Advanced Manufacturing 2, Article number: 30 (Dec 6, 2021) \ DOI: 10.37188/lam.2021.030
Yuhan Wang, Mark Eddison, Greg Fleishman, Martin Weigert, Shengjin Xu, Tim Wang, Konrad Rokicki, Cristian Goina, Fredrick E. Henry, Andrew L. Lemire, Uwe Schmidt, Hui Yang, Karel Svoboda, Eugene W. Myers, Stephan Saalfeld, Wyatt Korff, Scott M. Sternson, Paul W. Tillberg\ EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization\ Cell 184(26):6361–6377.e24 (Dec 6, 2021) \ DOI: 10.1016/j.cell.2021.11.024
Alan Ianeselli, Damla Tetiker, Julian Stein, Alexandra Kühnlein, Christof B. Mast, Dieter Braun, T.-Y. Dora Tang\ Non-equilibrium conditions inside rock pores drive fission, maintenance and selection of coacervate protocells\ Nat. Chem. 14(1):32–39 (Dec 6, 2021) \ DOI: 10.1038/s41557-021-00830-y
Fabio Schittler Neves, Marc Timme\ Decoding complex state space trajectories for neural computing\ Chaos: An Interdisciplinary Journal of Nonlinear Science 31(12) (Dec 6, 2021) \ DOI: 10.1063/5.0053429
Jenna Hoersten, Gloria Ruiz-Gómez, Felix Lansing, Teresa Rojo-Romanos, Lukas Theo Schmitt, Jan Sonntag, M Teresa Pisabarro, Frank Buchholz\ Pairing of single mutations yields obligate Cre-type site-specific recombinases\ Nucleic Acids Research 50(2):1174–1186 (Dec 6, 2021) \ DOI: 10.1093/nar/gkab1240
Ingo Nitschke, Axel Voigt\ Observer-invariant time derivatives on moving surfaces\ Journal of Geometry and Physics 173:104428 (Dec 3, 2021) \ DOI: 10.1016/j.geomphys.2021.104428
Neha Goveas, Claudia Waskow, Kathrin Arndt, Julian Heuberger, Qinyu Zhang, Dimitra Alexopoulou, Andreas Dahl, Walter Birchmeier, Konstantinos Anastassiadis, A. Francis Stewart, Andrea Kranz\ MLL1 is required for maintenance of intestinal stem cells\ PLoS Genet 17(12):e1009250 (Dec 3, 2021) \ DOI: 10.1371/journal.pgen.1009250
Cordula Reuther, Sönke Steenhusen, Christoph Robert Meinecke, Pradheebha Surendiran, Aseem Salhotra, Frida W Lindberg, Alf Månsson, Heiner Linke, Stefan Diez\ Molecular motor-driven filament transport across three-dimensional, polymeric micro-junctions\ New J. Phys. 23, 125002 (Dec 2, 2021) \ DOI: 10.1088/1367-2630/ac39b4
Stefano Bo, Lars Hubatsch, Jonathan Bauermann, Christoph A. Weber, Frank Jülicher\ Stochastic dynamics of single molecules across phase boundaries\ Phys. Rev. Research 3, 043150, (Dec 2, 2021) \ DOI: 10.1103/PhysRevResearch.3.043150
Xueping Zhao, Giacomo Bartolucci, Alf Honigmann, Frank Jülicher, Christoph A Weber\ Thermodynamics of Wetting, Prewetting and Surface Phase Transitions with Surface Binding\ New J. Phys. 23, 123003, (Dec 1, 2021) \ DOI: 10.1088/1367-2630/ac320b
Dennis Schifferl, Manuela Scholze-Wittler, Lars Wittler, Jesse V. Veenvliet, Frederic Koch, Bernhard G. Herrmann\ A 37 kb region upstream of brachyury comprising a notochord enhancer is essential for notochord and tail development\ Development 148(23) (Nov 25, 2021) \ DOI: 10.1242/dev.200059
D. Wenzel and A. Voigt\ Multiphase field models for collective cell migration\ Phys. Rev. E 104, 054410 (Nov 24, 2021) \ DOI: 10.1103/PhysRevE.104.054410
Alexandra Michurina, M Sadman Sakib, Cemil Kerimoglu, Dennis Manfred Krüger, Lalit Kaurani, Md Rezaul Islam, Parth Devesh Joshi, Sophie Schröder, Tonatiuh Pena Centeno, Jiayin Zhou, Ranjit Pradhan, Julia Cha, Xingbo Xu, Gregor Eichele, Elisabeth M Zeisberg, Andrea Kranz, A Francis Stewart, André Fischer\ Postnatal expression of the lysine methyltransferase SETD1B is essential for learning and the regulation of neuron‐enriched genes\ The EMBO Journal 41(1) (Nov 22, 2021) \ DOI: 10.15252/embj.2020106459
Nesrine Khouzami, Friedrich Michel, Pietro Incardona, Jeronimo Castrillon, Ivo F. Sbalzarini\ Model-based autotuning of discretization methods in numerical simulations of partial differential equations\ Journal of Computational Science 57:101489 (Nov 20, 2021) \ DOI: 10.1016/j.jocs.2021.101489
Robert Haase\ Image Processing Filters for Grids of Cells Analogous to Filters Processing Grids of Pixels\ Front. Comput. Sci. 3 (Nov 19, 2021) \ DOI: 10.3389/fcomp.2021.774396
- (Alumni Group) Robert Haase
Fabio S Neves, Marc Timme\ Bio-inspired computing by nonlinear network dynamics—a brief introduction\ J. Phys. Complex. 2(4):045019 (Nov 17, 2021) \ DOI: 10.1088/2632-072x/ac3ad4
Yukako Oda, Chisato Takahashi, Shota Harada, Shun Nakamura, Daxiao Sun, Kazumi Kiso, Yuko Urata, Hitoshi Miyachi, Yoshinori Fujiyoshi, Alf Honigmann, Seiichi Uchida, Yasushi Ishihama, Fumiko Toyoshima\ Discovery of anti-inflammatory physiological peptides that promote tissue repair by reinforcing epithelial barrier formation\ Sci. Adv. 7(47) (Nov 17, 2021) \ DOI: 10.1126/sciadv.abj6895
Chloé Roffay, Guillaume Molinard, Kyoohyun Kim, Marta Urbanska, Virginia Andrade, Victoria Barbarasa, Paulina Nowak, Vincent Mercier, José García-Calvo, Stefan Matile, Robbie Loewith, Arnaud Echard, Jochen Guck, Martin Lenz, Aurélien Roux\ Passive coupling of membrane tension and cell volume during active response of cells to osmosis\ Proc. Natl. Acad. Sci. U.S.A. 118(47) (Nov 16, 2021) \ DOI: 10.1073/pnas.2103228118
Byung Ho Lee, Irene Seijo-Barandiaran, Anne Grapin-Botton\ Epithelial morphogenesis in organoids\ Current Opinion in Genetics & Development 72:30–37 (Nov 15, 2021) \ DOI: 10.1016/j.gde.2021.10.001
Alberto Bertozzi, Chi-Chung Wu, Stefan Hans, Michael Brand, Gilbert Weidinger\ Wnt/β-catenin signaling acts cell-autonomously to promote cardiomyocyte regeneration in the zebrafish heart\ Developmental Biology (Nov 15, 2021) \ DOI: 10.1016/j.ydbio.2021.11.001
David Weik, Richard Nauber, Lars Buttner, Jurgen Czarske, Dirk Rabiger, Sanjay Singh, Tobias Vogt, Sven Eckert\ Ultrasound Image Velocimetry with Adaptive Beamforming for Modal Measurements in Liquid Metal Convection\ 2021 IEEE International Ultrasonics Symposium (IUS) (Nov 13, 2021) \ DOI: 10.1109/ius52206.2021.9593429
Dalileh Nabi, Hauke Drechsler, Johannes Pschirer, Franz Korn, Nadine Schuler, Stefan Diez, Rolf Jessberger, Mariola Chacón\ CENP-V is required for proper chromosome segregation through interaction with spindle microtubules in mouse oocytes\ Nat Commun 12, 6547 (Nov 11, 2021) \ DOI: 10.1038/s41467-021-26826-3
Johannes Girstmair, HongKee Moon, Charlène Brillard, Robert Haase, Pavel Tomancak\ Time to Upgrade: A New OpenSPIM Guide to Build and Operate Advanced OpenSPIM Configurations\ Advanced Biology 6(4) (Nov 11, 2021) \ DOI: 10.1002/adbi.202101182
- Pavel Tomancak
- (Alumni Group) Robert Haase
Judit Clopés, Jaeoh Shin, Marcus Jahnel, Stephan W. Grill, Vasily Zaburdaev\ Thermal fluctuations assist mechanical signal propagation in coiled-coil proteins\ Phys. Rev. E 104(5), 054403 (Nov 11, 2021) \ DOI: 10.1103/physreve.104.054403
- Stephan W. Grill
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Safak Chasan, Eliane Hesse, Passant Atallah, Matthias Gerstner, Solvig Diederichs, Astrid Schenker, Kay Grobe, Carsten Werner, Wiltrud Richter\ Sulfation of Glycosaminoglycan Hydrogels Instructs Cell Fate and Chondral versus Endochondral Lineage Decision of Skeletal Stem Cells In Vivo\ Adv Funct Materials 32(7) (Nov 6, 2021) \ DOI: 10.1002/adfm.202109176
Felix Schmieder, Rouhollah Habibey, Volker Busskamp, Lars Büttner, Jürgen W. Czarske\ Analysis of human iPSC-derived neuronal networks (hiPSCNN) using holographic single cell and full field optogenetic stimulation\ Biophotonics Congress 2021 (Nov 5, 2021) \ DOI: 10.1364/brain.2021.bm1b.4
Vaibhav Mahajan, Timon Beck, Paulina Gregorczyk, André Ruland, Simon Alberti, Jochen Guck, Carsten Werner, Raimund Schlüßler, Anna Verena Taubenberger\ Mapping Tumor Spheroid Mechanics in Dependence of 3D Microenvironment Stiffness and Degradability by Brillouin Microscopy\ Cancers 13(21):5549 (Nov 5, 2021) \ DOI: 10.3390/cancers13215549
Tooba Quidwai, Jiaolong Wang, Emma A Hall, Narcis A Petriman, Weihua Leng, Petra Kiesel, Jonathan N Wells, Laura C Murphy, Margaret A Keighren, Joseph A Marsh, Esben Lorentzen, Gaia Pigino, Pleasantine Mill\ A WDR35-dependent coat protein complex transports ciliary membrane cargo vesicles to cilia\ eLife 10 (Nov 4, 2021) \ DOI: 10.7554/elife.69786
Weizhou Luo, Eva Goebel, Patrick Reipschläger, Mats Ole Ellenberg, Raimund Dachselt\ Exploring and Slicing Volumetric Medical Data in Augmented Reality Using a Spatially-Aware Mobile Device\ IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct) (Nov 3, 2021) \ DOI: 10.1109/ISMAR-Adjunct54149.2021.00076
Lucas Woltmann, Dominik Olwig, Claudio Hartmann, Dirk Habich, Wolfgang Lehner\ PostCENN\ Proc. VLDB Endow. 14(12):2715–2718 (Oct 28, 2021) \ DOI: 10.14778/3476311.3476327
Philip Marszal, Marc Timme, Malte Schröder\ Phase separation induces congestion waves in electric vehicle charging\ Phys. Rev. E 104(4), L042302 (Oct 26, 2021) \ DOI: 10.1103/physreve.104.l042302
Iliya D. Stoev, Benjamin Seelbinder, Elena Erben, Nicola Maghelli, Moritz Kreysing\ Highly sensitive force measurements in an optically generated, harmonic hydrodynamic trap\ eLight, 1, 7 (Oct 23, 2021) \ DOI: 10.1186/s43593-021-00007-7
Xue Wang, Wentao Zheng, Haibo Zhou, Qiang Tu, Ya-Jie Tang, A Francis Stewart, Youming Zhang, Xiaoying Bian\ Improved dsDNA recombineering enables versatile multiplex genome engineering of kilobase-scale sequences in diverse bacteria\ Nucleic Acids Research 50(3):e15–e15 (Oct 22, 2021) \ DOI: 10.1093/nar/gkab1076
Lars Hubatsch, Louise M Jawerth, Celina Love, Jonathan Bauermann, TY Dora Tang, Stefano Bo, Anthony A Hyman, Christoph A Weber\ Quantitative theory for the diffusive dynamics of liquid condensates\ Elife 12 (10), e68620 (Oct 21, 2021) \ DOI: 10.7554/eLife.68620
Cindy D. Beyer, Sugina Thavalingam, Tatiana Guseva, Lisa Schardt, Ralf Zimmermann, Carsten Werner, Pascal Dietze, Julia Elisabeth Bandow, Nils Metzler-Nolte, Axel Rosenhahn\ Zwitterionic Peptides Reduce Accumulation of Marine and Freshwater Biofilm Formers\ ACS Appl. Mater. Interfaces 13(42):49682–49691 (Oct 20, 2021) \ DOI: 10.1021/acsami.1c13459
Robert Wagner, Sabine S. Eckstein, Hajime Yamazaki, Felicia Gerst, Jürgen Machann, Benjamin Assad Jaghutriz, Annette Schürmann, Michele Solimena, Stephan Singer, Alfred Königsrainer, Andreas L. Birkenfeld, Hans-Ulrich Häring, Andreas Fritsche, Susanne Ullrich, Martin Heni\ Metabolic implications of pancreatic fat accumulation\ Nat Rev Endocrinol 18(1):43–54 (Oct 20, 2021) \ DOI: 10.1038/s41574-021-00573-3
M. Sankaranarayanan, Ryan J. Emenecker, Elise L. Wilby, Marcus Jahnel, Irmela R.E.A. Trussina, Matt Wayland, Simon Alberti, Alex S. Holehouse, Timothy T. Weil\ Adaptable P body physical states differentially regulate bicoid mRNA storage during early Drosophila development\ Developmental Cell 56(20):2886–2901.e6 (Oct 19, 2021) \ DOI: 10.1016/j.devcel.2021.09.021
- Simon Alberti
- Marcus Jahnel
Nicolas Hauck, Talika A. Neuendorf, Max J. Männel, Lucas Vogel, Ping Liu, Enno Stündel, Yixin Zhang, Julian Thiele\ Processing of fast-gelling hydrogel precursors in microfluidics by electrocoalescence of reactive species\ Soft Matter (Oct 19, 2021) \ DOI: 10.1039/D1SM01176F
Adrien Sthoer, Ellen M. Adams, Sanghamitra Sengupta, Robert W. Corkery, Heather C. Allen, Eric C. Tyrode\ La3+ and Y3+ interactions with the carboxylic acid moiety at the liquid/vapor interface: Identification of binding complexes, charge reversal, and detection limits\ Journal of Colloid and Interface Science 608:2169–2180 (Oct 18, 2021) \ DOI: 10.1016/j.jcis.2021.10.052
Mrityunjoy Kar, Ammon E. Posey, Furqan Dar, Anthony A. Hyman, Rohit V. Pappu\ Glycine-Rich Peptides from FUS Have an Intrinsic Ability to Self-Assemble into Fibers and Networked Fibrils\ Biochemistry 60(43):3213–3222 (Oct 16, 2021) \ DOI: 10.1021/acs.biochem.1c00501
Eduard Jorswieck, Andrew Lonnstrom, Karl-Ludwig Besser, Stefan Rothe, Juergen W. Czarske\ Achievable Physical-Layer Secrecy in Multi-Mode Fiber Channels using Artificial Noise\ 2021 17th International Symposium on Wireless Communication Systems (ISWCS) (Oct 15, 2021) \ DOI: 10.1109/iswcs49558.2021.9562176
Ana Rodríguez Sánchez-Archidona, Céline Cruciani-Guglielmacci, Clara Roujeau, Leonore Wigger, Justine Lallement, Jessica Denom, Marko Barovic, Nadim Kassis, Florence Mehl, Jurgen Weitz, Marius Distler, Christian Klose, Kai Simons, Mark Ibberson, Michele Solimena, Christophe Magnan, Bernard Thorens\ Plasma triacylglycerols are biomarkers of β-cell function in mice and humans\ Molecular Metabolism 54:101355 (Oct 12, 2021) \ DOI: 10.1016/j.molmet.2021.101355
Edgar E Boczek, Julius Fürsch, Marie Laura Niedermeier, Louise Jawerth, Marcus Jahnel, Martine Ruer-Gruß, Kai-Michael Kammer, Peter Heid, Laura Mediani, Jie Wang, Xiao Yan, Andrej Pozniakovski, Ina Poser, Daniel Mateju, Lars Hubatsch, Serena Carra, Simon Alberti, Anthony A Hyman, Florian Stengel\ HspB8 prevents aberrant phase transitions of FUS by chaperoning its folded RNA-binding domain\ eLife 10:e69377 (Oct 12, 2021) \ DOI: 10.7554/eLife.69377
- Simon Alberti
- Anthony A. Hyman
- Marcus Jahnel
Lars Kegel, Claudio Hartmann, Maik Thiele, Wolfgang Lehner\ Season- and Trend-aware Symbolic Approximation for Accurate and Efficient Time Series Matching\ Datenbank Spektrum 21(3):225–236 (Oct 7, 2021) \ DOI: 10.1007/s13222-021-00389-5
C. Shan Xu, Song Pang, Gleb Shtengel, Andreas Müller, Alex T. Ritter, Huxley K. Hoffman, Shin-ya Takemura, Zhiyuan Lu, H. Amalia Pasolli, Nirmala Iyer, Jeeyun Chung, Davis Bennett, Aubrey V. Weigel, Melanie Freeman, Schuyler B. van Engelenburg, Tobias C. Walther, Robert V. Farese, Jennifer Lippincott-Schwartz, Ira Mellman, Michele Solimena, Harald F. Hess\ An open-access volume electron microscopy atlas of whole cells and tissues\ Nature 599(7883):147–151 (Oct 7, 2021) \ DOI: 10.1038/s41586-021-03992-4
Sara N. Nagelberg*, Jan F. Totz*, Matthäus Mittasch, Vishnu Sresht, Lukas Zeininger, Timothy M Swager, Moritz Kreysing, Mathias Kolle\ Actuation of Janus Emulsion Droplets via Optothermally Induced Marangoni Forces\ Phys Rev Lett 127(14):144503 (Oct 1, 2021) \ DOI: 10.1103/PhysRevLett.127.144503
Jana Sievers, Ralf Zimmermann, Jens Friedrichs, Dagmar Pette, Yanuar Dwi Putra Limasale, Carsten Werner, Petra Birgit Welzel\ Customizing biohybrid cryogels to serve as ready-to-use delivery systems of signaling proteins\ Biomaterials 278:121170 (Oct 1, 2021) \ DOI: 10.1016/j.biomaterials.2021.121170
Andrea Auconi, Benjamin M. Friedrich, Andrea Giansanti\ Fluctuation-response theorem for Kullback-Leibler divergences to quantify causation\ EPL 135(2):28002 (Sep 30, 2021) \ DOI: 10.1209/0295-5075/135/28002
Zahra Ghezelayagh, Mahsa Zabihi, Ibrahim Zarkesh, Carla A. C. Gonçalves, Michael Larsen, Newsha Hagh-parast, Mohammad Pakzad, Massoud Vosough, Babak Arjmand, Hossein Baharvand, Bagher Larijani, Anne Grapin-Botton, Hamid Reza Aghayan, Yaser Tahamtani\ Improved Differentiation of hESC-Derived Pancreatic Progenitors by Using Human Fetal Pancreatic Mesenchymal Cells in a Micro‐scalable Three-Dimensional Co-culture System\ Stem Cell Rev and Rep 18(1):360–377 (Sep 29, 2021) \ DOI: 10.1007/s12015-021-10266-z
Jingyuan Zhu, Till Korten, Hillel Kugler, Falco van Delft, Alf Månsson, Danny Reuter, Stefan Diez, Heiner Linke\ Physical requirements for scaling up network-based biocomputation\ New J. Phys. 23(10):105004 (Sep 29, 2021) \ DOI: 10.1088/1367-2630/ac2a5d
Stefan Rothe, Philipp Daferner, Sebastian Heide, David Krause, Felix Schmieder, Nektarios Koukourakis, Jürgen W. Czarske\ Benchmarking analysis of computer generated holograms for complex wavefront shaping using pixelated phase modulators\ Opt. Express 29(23):37602 (Sep 29, 2021) \ DOI: 10.1364/oe.434842
Tom Horak, Norine Coenen, Niklas Metzger, Christopher Hahn, Tamara Flemisch, Julián Méndez, Dennis Dimov, Bernd Finkbeiner, Raimund Dachselt\ Visual Analysis of Hyperproperties for Understanding Model Checking Results\ IEEE Transactions on Visualization and Computer Graphics 28 (1), 357-367 (Sep 29, 2021) \ DOI: 10.1109/TVCG.2021.3114866
Charlie Duclut, Joris Paijmans, Mandar M Inamdar, Carl D. Modes, Frank Jülicher\ Nonlinear Rheology of Cellular Networks\ Cells and Development, 203746 (Sep 27, 2021) \ DOI: 10.1016/j.cdev.2021.203746
Kristian Le Vay, Emilie Yeonwha Song, Basusree Ghosh, T.‐Y. Dora Tang, Hannes Mutschler\ Enhanced Ribozyme‐Catalyzed Recombination and Oligonucleotide Assembly in Peptide‐RNA Condensates\ Angew Chem Int Ed 60(50):26096–26104 (Sep 27, 2021) \ DOI: 10.1002/anie.202109267
B. Duygu Özpolat, Nadine Randel, Elizabeth A. Williams, Luis Alberto Bezares-Calderón, Gabriele Andreatta, Guillaume Balavoine, Paola Y. Bertucci, David E. K. Ferrier, Maria Cristina Gambi, Eve Gazave, Mette Handberg-Thorsager, Jörg Hardege, Cameron Hird, Yu-Wen Hsieh, Jerome Hui, Kevin Nzumbi Mutemi, Stephan Q. Schneider, Oleg Simakov, Hernando M. Vergara, Michel Vervoort, Gáspár Jékely, Kristin Tessmar-Raible, Florian Raible, Detlev Arendt\ The Nereid on the rise: Platynereis as a model system\ EvoDevo 12(1), 10 (Sep 27, 2021) \ DOI: 10.1186/s13227-021-00180-3
Stefan Dannenmaier, Christine Desroches Altamirano, Lisa Schüler, Ying Zhang, Johannes Hummel, Martin Milanov, Silke Oeljeklaus, Hans-Georg Koch, Sabine Rospert, Simon Alberti, Bettina Warscheid\ Quantitative proteomics identifies the universally conserved ATPase Ola1p as a positive regulator of heat shock response in Saccharomyces cerevisiae\ Journal of Biological Chemistry 297(5):101050 (Sep 24, 2021) \ DOI: 10.1016/j.jbc.2021.101050
Abhinav Singh, Pietro Incardona, Ivo F. Sbalzarini\ A C++ expression system for partial differential equations enables generic simulations of biological hydrodynamics\ Eur. Phys. J. E 44, 117 (2021). (Sep 23, 2021) \ DOI: 10.1140/epje/s10189-021-00121-x
Giovanni Sirio Carmantini, Fabio Schittler Neves, Marc Timme, Serafim Rodrigues\ Stochastic facilitation in heteroclinic communication channels\ Chaos. 31 (9): 093130. (Sep 23, 2021) \ DOI: 10.1063/5.0054485
Dominik Hahn, Jannick M. Sonntag, Steffen Lück, Manfred F. Maitz, Uwe Freudenberg, Rainer Jordan, Carsten Werner\ Poly(2‐alkyl‐2‐oxazoline)‐Heparin Hydrogels—Expanding the Physicochemical Parameter Space of Biohybrid Materials\ Adv Healthcare Materials 10(22) (Sep 20, 2021) \ DOI: 10.1002/adhm.202101327
Fabio Novelli, Claudius Hoberg, Ellen M. Adams, J. Michael Klopf, Martina Havenith\ Terahertz pump–probe of liquid water at 12.3 THz\ Phys. Chem. Chem. Phys. 24(2):653–665 (Sep 17, 2021) \ DOI: 10.1039/d1cp03207k
Natalia Gorenkova, Manfred F. Maitz, Georg Böhme, Hani A. Alhadrami, Essam H. Jiffri, John D. Totten, Carsten Werner, Hilary V. O. Carswell, F. Philipp Seib\ The innate immune response of self-assembling silk fibroin hydrogels\ Biomater. Sci. 9(21):7194–7204 (Sep 15, 2021) \ DOI: 10.1039/d1bm00936b
Anatol W. Fritsch, Andrés F. Diaz-Delgadillo, Omar Adame-Arana, Carsten Hoege, Matthäus Mittasch, Moritz Kreysing, Mark Leaver, Anthony A. Hyman, Frank Jülicher, and Christoph A. Weber\ Local thermodynamics govern formation and dissolution of Caenorhabditis elegans P granule condensates\ PNAS September 14, 2021 118 (37) e2102772118 (Sep 14, 2021) \ DOI: 10.1073/pnas.2102772118
Pallavi Subramanian, Sofia Gargani, Alessandra Palladini, Margarita Chatzimike, Michal Grzybek, Mirko Peitzsch, Anastasios D. Papanastasiou, Iryna Pyrina, Vasileios Ntafis, Bettina Gercken, Mathias Lesche, Andreas Petzold, Anupam Sinha, Marina Nati, Veera Raghavan Thangapandi, Ioannis Kourtzelis, Margarita Andreadou, Anke Witt, Andreas Dahl, Ralph Burkhardt, Robert Haase, António Miguel de Jesus Domingues, Ian Henry, Nicola Zamboni, Peter Mirtschink, Kyoung‐Jin Chung, Jochen Hampe, Ünal Coskun, Dimitris L. Kontoyiannis, Triantafyllos Chavakis\ The RNA binding protein human antigen R is a gatekeeper of liver homeostasis\ Hepatology 75(4):881–897 (Sep 14, 2021) \ DOI: 10.1002/hep.32153
- Ünal Coskun
- (Alumni Group) Robert Haase
Elisabeth Kemter, Andreas Müller, Martin Neukam, Anna Ivanova, Nikolai Klymiuk, Simone Renner, Kaiyuan Yang, Johannes Broichhagen, Mayuko Kurome, Valeri Zakhartchenko, Barbara Kessler, Klaus-Peter Knoch, Marc Bickle, Barbara Ludwig, Kai Johnsson, Heiko Lickert, Thomas Kurth, Eckhard Wolf, Michele Solimena\ Sequential in vivo labeling of insulin secretory granule pools inINS-SNAPtransgenic pigs\ Proc. Natl. Acad. Sci. U.S.A. 118(37) (Sep 14, 2021) \ DOI: 10.1073/pnas.2107665118
Elena Erben, Benjamin Seelbinder, Iliya D. Stoev, Sergei Klykov, Nicola Maghelli, Moritz Kreysing\ Feedback-based positioning and diffusion suppression of particles via optical control of thermoviscous flows\ Opt Express, 29(19):30272–30283 (Sep 13, 2021) \ DOI: 10.1364/oe.432935
Gonzalo Rosso, Daniel Wehner, Christine Schweitzer, Stephanie Möllmert, Elisabeth Sock, Jochen Guck, Victor Shahin\ Matrix stiffness mechanosensing modulates the expression and distribution of transcription factors in Schwann cells\ Bioengineering & Transla Med 7(1) (Sep 13, 2021) \ DOI: 10.1002/btm2.10257
Stefano Suzzi, Reiner Ahrendt, Stefan Hans, Svetlana A. Semenova, Avinash Chekuru, Paul Wirsching, Volker Kroehne, Saygın Bilican, Shady Sayed, Sylke Winkler, Sandra Spieß, Anja Machate, Jan Kaslin, Pertti Panula, Michael Brand\ Deletion of lrrk2 causes early developmental abnormalities and age-dependent increase of monoamine catabolism in the zebrafish brain\ PLoS Genet 17(9):e1009794 (Sep 13, 2021) \ DOI: 10.1371/journal.pgen.1009794
Jan-Christoph Simon, Carsten Werner\ 12 years more than just skin and bones: the CRC Transregio 67\ Biological Chemistry 402(11):1269–1270 (Sep 11, 2021) \ DOI: 10.1515/hsz-2021-0353
Tobias Pietzsch, Lorenzo Duso, Christoph Zechner\ Compartor: a toolbox for the automatic generation of moment equations for dynamic compartment populations\ Bioinformatics 37(17):2782–2784 (Sep 9, 2021) \ DOI: 10.1093/bioinformatics/btab058
Gokul Kesavan, Anja Machate, Michael Brand\ CRISPR/Cas9-Based Split Fluorescent Protein Tagging\ Zebrafish 18(6):369–373 (Sep 8, 2021) \ DOI: 10.1089/zeb.2021.0031
Matthias Joppa, Mike Bermuske, Frank Rüdiger, Lars Büttner, Jochen Fröhlich, Juergen W. Czarske\ Measurement and Numerical Simulation of the Velocity Profile in the Thin Film of an Impinging Water Jet\ Journal of Fluids Engineering 144(3) (Sep 6, 2021) \ DOI: 10.1115/1.4052361
Songlei Liu, Johannes Striebel, Giovanni Pasquini, Alex H. M. Ng, Parastoo Khoshakhlagh, George M. Church, Volker Busskamp\ Neuronal Cell-type Engineering by Transcriptional Activation\ Front. Genome Ed. 3 (Sep 3, 2021) \ DOI: 10.3389/fgeed.2021.715697
Lange S, Friedrich BM\ Network permeability changes according to a quadratic power law upon removal of a single edge\ EPL, 134 (2021) 64002 (Sep 2, 2021) \ DOI: 10.1209/0295-5075/134/64002
Lars Grüter, Richard Nauber, Jürgen Czarske\ Non-invasive aberration correction and adaptive ultrasound imaging with a time reversal virtual array\ tm - Technisches Messen 88(s1):s34–s36 (Aug 30, 2021) \ DOI: 10.1515/teme-2021-0062
André Ruland, Saskia Schenker, Lucas Schirmer, Jens Friedrichs, Andrea Meinhardt, Véronique B. Schwartz, Nadine Kaiser, Rupert Konradi, William MacDonald, Tina Helmecke, Melissa K. L. N. Sikosana, Juliane Valtin, Dominik Hahn, Lars D. Renner, Carsten Werner, Uwe Freudenberg\ Amphiphilic Copolymers for Versatile, Facile, and In Situ Tunable Surface Biofunctionalization\ Advanced Materials 33(42) (Aug 25, 2021) \ DOI: 10.1002/adma.202102489
Jenna L. Wingfield, Betlehem Mekonnen, Ilaria Mengoni, Peiwei Liu, Mareike Jordan, Dennis Diener, Gaia Pigino, Karl Lechtreck\ In vivo imaging shows continued association of several IFT-A, IFT-B and dynein complexes while IFT trains U-turn at the tip\ Journal of Cell Science 134(18) (Aug 20, 2021) \ DOI: 10.1242/jcs.259010
Ellen M. Adams, Hongxia Hao, Itai Leven, Maximilian Rüttermann, Hanna Wirtz, Martina Havenith, Teresa Head‐Gordon\ Proton Traffic Jam: Effect of Nanoconfinement and Acid Concentration on Proton Hopping Mechanism\ Angew Chem Int Ed 60(48):25419–25427 (Aug 17, 2021) \ DOI: 10.1002/anie.202108766
Elke Gabriel, Walid Albanna, Giovanni Pasquini, Anand Ramani, Natasa Josipovic, Aruljothi Mariappan, Friedrich Schinzel, Celeste M. Karch, Guobin Bao, Marco Gottardo, Ata Alp Suren, Jürgen Hescheler, Kerstin Nagel-Wolfrum, Veronica Persico, Silvio O. Rizzoli, Janine Altmüller, Maria Giovanna Riparbelli, Giuliano Callaini, Olivier Goureau, Argyris Papantonis, Volker Busskamp, Toni Schneider, Jay Gopalakrishnan\ Human brain organoids assemble functionally integrated bilateral optic vesicles\ Cell Stem Cell 28(10):1740–1757.e8 (Aug 17, 2021) \ DOI: 10.1016/j.stem.2021.07.010
Qian Zhang, Stefan Rothe, Nektarios Koukourakis, Jürgen Czarske\ Multimode Fiber Transmission Matrix Inversion with Densely Connected Convolutional Network for Physical Layer Security\ Conference on Lasers and Electro-Optics (Aug 17, 2021) \ DOI: 10.1364/cleo_si.2021.sm1b.2
Titus Franzmann, Simon Alberti\ Ubiquitin protein helps cells to recover from stress\ Nature 597(7875):183–184 (Aug 16, 2021) \ DOI: 10.1038/d41586-021-02197-z
Mark Skamrahl, Hongtao Pang, Maximilian Ferle, Jannis Gottwald, Angela Rübeling, Riccardo Maraspini, Alf Honigmann, Tabea A. Oswald, Andreas Janshoff\ Tight Junction ZO Proteins Maintain Tissue Fluidity, Ensuring Efficient Collective Cell Migration\ Advanced Science 8(19) (Aug 12, 2021) \ DOI: 10.1002/advs.202100478
Olga Vvedenskaya, Tim Daniel Rose, Oskar Knittelfelder, Alessandra Palladini, Judith Andrea Heidrun Wodke, Kai Schuhmann, Jacobo Miranda Ackerman, Yuting Wang, Canan Has, Mario Brosch, Veera Raghavan Thangapandi, Stephan Buch, Thomas Züllig, Jürgen Hartler, Harald C. Köfeler, Christoph Röcken, Ünal Coskun, Edda Klipp, Witigo von Schoenfels, Justus Gross, Clemens Schafmayer, Jochen Hampe, Josch Konstantin Pauling, Andrej Shevchenko\ Nonalcoholic fatty liver disease stratification by liver lipidomics\ Journal of Lipid Research 62:100104 (Aug 10, 2021) \ DOI: 10.1016/j.jlr.2021.100104
Sascha Balakin, Bergoi Ibarlucea, Dmitry Belyaev, Larysa Baraban, Stefanie Hänsel, Manfred Maitz, Carsten Werner, Gianaurelio Cuniberti\ Hemocompatible Electrochemical Sensors for Continuous Monitoring of Blood Parameters\ The 8th International Symposium on Sensor Science 19 (Aug 5, 2021) \ DOI: 10.3390/i3s2021dresden-10174
Timo P. Gros, David Groß, Stefan Gumhold, Jörg Hoffmann, Michaela Klauck, Marcel Steinmetz\ TraceVis: Towards Visualization for Deep Statistical Model Checking\ Lecture Notes in Computer Science 27–46 (Aug 4, 2021) \ DOI: 10.1007/978-3-030-83723-5_3
Lucía Cordero-Espinoza, Anna M. Dowbaj, Timo N. Kohler, Bernhard Strauss, Olga Sarlidou, German Belenguer, Clare Pacini, Nuno P. Martins, Ross Dobie, John R. Wilson-Kanamori, Richard Butler, Nicole Prior, Palle Serup, Florian Jug, Neil C. Henderson, Florian Hollfelder, Meritxell Huch\ Dynamic cell contacts between periportal mesenchyme and ductal epithelium act as a rheostat for liver cell proliferation\ Cell Stem Cell 28(11):1907–1921.e8 (Aug 2, 2021) \ DOI: 10.1016/j.stem.2021.07.002
Jürgen W. Czarske\ 3D Cell-Rotation using Multi-Core Fiber-based Lab-on-a-Chip and Wavefront Shaping\ Optical Trapping and Optical Micromanipulation XVIII (Jul 30, 2021) \ DOI: 10.1117/12.2596236
Lenka Belicova, Urska Repnik, Julien Delpierre, Elzbieta Gralinska, Sarah Seifert, José Ignacio Valenzuela, Hernán Andrés Morales-Navarrete, Christian Franke, Helin Räägel, Evgeniya Shcherbinina, Tatiana Prikazchikova, Victor Koteliansky, Martin Vingron, Yannis L Kalaidzidis, Timofei Zatsepin, Marino Zerial\ Anisotropic expansion of hepatocyte lumina enforced by apical bulkheads\ Journal of Cell Biology 220 (10) (Jul 30, 2021) \ DOI: 10.1083/jcb.202103003
Ondřej Kucera, Valerie Siahaan, Daniel Janda, Sietske H. Dijkstra, Eliška Pilátová, Eva Zatecka, Stefan Diez, Marcus Braun, Zdenek Lansky\ Anillin propels myosin-independent constriction of actin rings\ Nat Commun 12, 4595 (Jul 28, 2021) \ DOI: 10.1038/s41467-021-24474-1
Weilin Lin, Shanil Gandhi, Alan Rodrigo Oviedo Lara, Alvin K. Thomas, Ralf Helbig, Yixin Zhang\ Controlling Surface Wettability for Automated In Situ Array Synthesis and Direct Bioscreening\ Advanced Materials (Jul 26, 2021) \ DOI: 10.1002/adma.202102349
Till Korten, Stefan Diez, Heiner Linke, Dan V Nicolau, Hillel Kugler\ Design of network-based biocomputation circuits for the exact cover problem\ New J. Phys. 23(8):085004 (Jul 23, 2021) \ DOI: 10.1088/1367-2630/ac175d
Rank M, Voigt A\ Active flows on curved surfaces\ Physics of Fluids 33, 072110 (Jul 21, 2021) \ DOI: 10.1063/5.0056099
Lucas Schirmer, Passant Atallah, Uwe Freudenberg, Carsten Werner\ Chemokine‐Capturing Wound Contact Layer Rescues Dermal Healing\ Advanced Science 8(18) (Jul 19, 2021) \ DOI: 10.1002/advs.202100293
Sarita Hebbar, Elisabeth Knust\ Reactive oxygen species (ROS) constitute an additional player in regulating epithelial development\ BioEssays 43(8) (Jul 14, 2021) \ DOI: 10.1002/bies.202100096
Hannes Emmerich, Ludwig Schaller, Richard Nauber, Leon Knüpfer, Sascha Heitkam, Jürgen Czarske, Lars Büttner\ Linear, spatio-temporally resolved ultrasound measurement of the liquid fraction distribution in froth\ tm - Technisches Messen 88(9):562–570 (Jul 13, 2021) \ DOI: 10.1515/teme-2021-0047
Julian Lich, Tino Wollmann, Angelos Filippatos, Maik Gude, Juergen Czarske, Robert Kuschmierz\ Spatially Resolved Experimental Modal Analysis on High-Speed Composite Rotors Using a Non-Contact, Non-Rotating Sensor\ Sensors 21(14):4705 (Jul 9, 2021) \ DOI: 10.3390/s21144705
Thomas Quail, Stefan Golfier, Maria Elsner, Keisuke Ishihara, Vasanthanarayan Murugesan, Roman Renger, Frank Jülicher, Jan Brugués\ Force generation by protein–DNA co-condensation\ Nature Physics 17, 1007–1012 (Jul 8, 2021) \ DOI: 10.1038/s41567-021-01285-1
Sebastian Kühn, Joanna Freyse, Passant Atallah, Jörg Rademann, Uwe Freudenberg, Carsten Werner\ Tuning the network charge of biohybrid hydrogel matrices to modulate the release of SDF-1\ Biological Chemistry 402(11):1453–1464 (Jul 4, 2021) \ DOI: 10.1515/hsz-2021-0175
Cordula Reuther, Rachele Catalano, Aseem Salhotra, Venukumar Vemula, Till Korten, Stefan Diez, Alf Månsson\ Comparison of actin- and microtubule-based motility systems for application in functional nanodevices\ New J. Phys. 23(7):075007 (Jul 2, 2021) \ DOI: 10.1088/1367-2630/ac10ce
Mathias Schenkel, Antoine Treff, Charles M. Deber, Georg Krainer, Michael Schlierf\ Heat treatment of thioredoxin fusions increases the purity of α‐helical transmembrane protein constructs\ Protein Science 30(9):1974–1982 (Jul 1, 2021) \ DOI: 10.1002/pro.4150
A. Gong, S. Rode, G. Gompper, U. B. Kaupp, J. Elgeti, B. M. Friedrich, L. Alvarez\ Reconstruction of the three-dimensional beat pattern underlying swimming behaviors of sperm\ Eur. Phys. J. E 44(7), 87 (Jul 1, 2021) \ DOI: 10.1140/epje/s10189-021-00076-z
Leonore Wigger, Marko Barovic, Andreas-David Brunner, Flavia Marzetta, Eyke Schöniger, Florence Mehl, Nicole Kipke, Daniela Friedland, Frederic Burdet, Camille Kessler, Mathias Lesche, Bernard Thorens, Ezio Bonifacio, Cristina Legido-Quigley, Pierre Barbier Saint Hilaire, Philippe Delerive, Andreas Dahl, Christian Klose, Mathias J. Gerl, Kai Simons, Daniela Aust, Jürgen Weitz, Marius Distler, Anke M. Schulte, Matthias Mann, Mark Ibberson, Michele Solimena\ Multi-omics profiling of living human pancreatic islet donors reveals heterogeneous beta cell trajectories towards type 2 diabetes\ Nat Metab 3(7):1017–1031 (Jun 28, 2021) \ DOI: 10.1038/s42255-021-00420-9
Édgar Roldán, Jérémie Barral, Pascal Martin, Juan M R Parrondo, Frank Jülicher\ Quantifying entropy production in active fluctuations of the hair-cell bundle from time irreversibility and uncertainty relations\ New J. Phys. 23(8):083013 (Jun 28, 2021) \ DOI: 10.1088/1367-2630/ac0f18
Rita Mateus, Jana F. Fuhrmann, Natalie A. Dye\ Growth across scales: Dynamic signaling impacts tissue size and shape\ Current Opinion in Cell Biology Volume 73, Pages 50-57 (Jun 26, 2021) \ DOI: 10.1016/j.ceb.2021.05.002
Diana D. Moreno Santillán, Tanya M. Lama, Yocelyn T. Gutierrez Guerrero, Alexis M. Brown, Paul Donat, Huabin Zhao, Stephen J. Rossiter, Laurel R. Yohe, Joshua H. Potter, Emma C. Teeling, Sonja C. Vernes, Kalina T. J. Davies, Eugene Myers, Graham M. Hughes, Zixia Huang, Federico Hoffmann, Angelique P. Corthals, David A. Ray, Liliana M. Dávalos\ Large‐scale genome sampling reveals unique immunity and metabolic adaptations in bats\ Molecular Ecology 30(23):6449–6467 (Jun 19, 2021) \ DOI: 10.1111/mec.16027
Benedict Lotz, Friederike Bothe, Anne-Kathrin Deubel, Eliane Hesse, Yvonne Renz, Carsten Werner, Simone Schäfer, Thomas Böck, Jürgen Groll, Brigitte von Rechenberg, Wiltrud Richter, Sebastien Hagmann\ Preclinical Testing of New Hydrogel Materials for Cartilage Repair: Overcoming Fixation Issues in a Large Animal Model\ International Journal of Biomaterials 2021:1–14 (Jun 19, 2021) \ DOI: 10.1155/2021/5583815
Castro Johnbosco, Stefan Zschoche, Mirko Nitschke, Dominik Hahn, Carsten Werner, Manfred F. Maitz\ Bioresponsive starPEG-heparin hydrogel coatings on vascular stents for enhanced hemocompatibility\ Materials Science and Engineering: C 128:112268 (Jun 18, 2021) \ DOI: 10.1016/j.msec.2021.112268
Ellen M. Adams, Simone Pezzotti, Jonas Ahlers, Maximilian Rüttermann, Maxim Levin, Adi Goldenzweig, Yoav Peleg, Sarel J. Fleishman, Irit Sagi, Martina Havenith\ Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction\ JACS Au 1(7):1076–1085 (Jun 18, 2021) \ DOI: 10.1021/jacsau.1c00155
Axel Hertzschuch, Guido Moerkotte, Wolfgang Lehner, Norman May, Florian Wolf, Lars Fricke\ Small Selectivities Matter: Lifting the Burden of Empty Samples\ Proceedings of the 2021 International Conference on Management of Data (Jun 18, 2021) \ DOI: 10.1145/3448016.3452805
Michael Günther, Maik Thiele, Julius Gonsior, Wolfgang Lehner\ Pre-Trained Web Table Embeddings for Table Discovery\ Fourth Workshop in Exploiting AI Techniques for Data Management (Jun 18, 2021) \ DOI: 10.1145/3464509.3464892
Mehdi Moghaddamfar, Christian Färber, Wolfgang Lehner, Norman May, Akash Kumar\ Resource-Efficient Database Query Processing on FPGAs\ Proceedings of the 17th International Workshop on Data Management on New Hardware (DaMoN 2021) (Jun 18, 2021) \ DOI: 10.1145/3465998.3466006
Johannes Fett, Annett Ungethüm, Dirk Habich, Wolfgang Lehner\ The Case for SIMDified Analytical Query Processing on GPUs\ Proceedings of the 17th International Workshop on Data Management on New Hardware (DaMoN 2021) (Jun 18, 2021) \ DOI: 10.1145/3465998.3466015
Xingbo Yang, Matthias Heinemann, Jonathon Howard, Greg Huber, Srividya Iyer-Biswas, Guillaume Le Treut, Michael Lynch, Kristi L. Montooth, Daniel J. Needleman, Simone Pigolotti, Jonathan Rodenfels, Pierre Ronceray, Sadasivan Shankar, Iman Tavassoly, Shashi Thutupalli, Denis V. Titov, Jin Wang, Peter J. Foster\ Physical bioenergetics: Energy fluxes, budgets, and constraints in cells\ Proc. Natl. Acad. Sci. U.S.A. 118(26) (Jun 17, 2021) \ DOI: 10.1073/pnas.2026786118
Mareike A. Jordan, Gaia Pigino\ The structural basis of intraflagellar transport at a glance\ Journal of Cell Science 134(12) (Jun 17, 2021) \ DOI: 10.1242/jcs.247163
Pietro Incardona, Tommaso Bianucci, Ivo F. Sbalzarini\ Distributed Sparse Block Grids on GPUs\ Lecture Notes in Computer Science 272–290 (Jun 16, 2021) \ DOI: 10.1007/978-3-030-78713-4_15
Michael Hecht, Ivo F. Sbalzarini\ Biggs Theorem for Directed Cycles and Topological Invariants of Digraphs\ APM 11(06):573–594 (Jun 16, 2021) \ DOI: 10.4236/apm.2021.116037
Nesrine Khouzami, Lars Schütze, Pietro Incardona, Landfried Kraatz, Tina Subic, Jeronimo Castrillon, Ivo F. Sbalzarini\ The OpenPME Problem Solving Environment for Numerical Simulations\ In Proc. Intl. Conf. on Computational Science (ICCS), volume 12742 of Lecture Notes in Computer Science, pages 614–627 (Jun 9, 2021) \ DOI: 10.1007/978-3-030-77961-0_49
D. Duffy, L. Cmok, J. S. Biggins, A. Krishna, C. D. Modes, M. K. Abdelrahman, M. Javed, T. H. Ware, F. Feng, M. Warner\ Shape programming lines of concentrated Gaussian curvature\ Journal of Applied Physics 129(22) (Jun 9, 2021) \ DOI: 10.1063/5.0044158
Zeyu Gao, Hannes Radner, Lars Büttner, Hongwei Ye, Xinyang Li, Jürgen Czarske\ Distortion correction for particle image velocimetry using multiple-input deep convolutional neural network and Hartmann-Shack sensing\ Opt Express 29(12):18669–18687 (Jun 7, 2021) \ DOI: 10.1364/oe.419591
Mikhail Zarubin, Patrick Damme, Alexander Krause, Dirk Habich, Wolfgang Lehner\ SIMD-MIMD cocktail in a hybrid memory glass\ Proceedings of the 14th ACM International Conference on Systems and Storage (Jun 6, 2021) \ DOI: 10.1145/3456727.3463782
Markéta Kubánková, Bettina Hohberger, Jakob Hoffmanns, Julia Fürst, Martin Herrmann, Jochen Guck, Martin Kräter\ Physical phenotype of blood cells is altered in COVID-19\ Biophysical Journal 120(14):2838–2847 (Jun 2, 2021) \ DOI: 10.1016/j.bpj.2021.05.025
Lakkoji Satish, Santanu Santra, Mikhail V. Tsurkan, Carsten Werner, Madhurima Jana, Harekrushna Sahoo\ Conformational changes of GDNF-derived peptide induced by heparin, heparan sulfate, and sulfated hyaluronic acid – Analysis by circular dichroism spectroscopy and molecular dynamics simulation\ International Journal of Biological Macromolecules 182:2144–2150 (Jun 2, 2021) \ DOI: 10.1016/j.ijbiomac.2021.05.194
Isaac Klein, Ann Boija, Lena Afeyan, Susana Hawken, Mengyang Fan, Dylan Taatjes, Arup Chakraborty, Phillip Sharp, Young Tae Chang, Anthony Hyman, Nathanael Gray, Richard Young\ Partitioning of cancer therapeutics in nuclear condensates.\ JCO 39(15_suppl):3131–3131 (Jun 2, 2021) \ DOI: 10.1200/jco.2021.39.15_suppl.3131
Anna Jaeschke, Nicholas R. Harvey, Mikhail Tsurkan, Carsten Werner, Lyn R. Griffiths, Larisa M. Haupt, Laura J. Bray\ Techniques for RNA extraction from cells cultured in starPEG–heparin hydrogels\ Open Biol. 11(6) (Jun 1, 2021) \ DOI: 10.1098/rsob.200388
Angela Jacobi, Angela Ariza de Schellenberger, Yavuz Oguz Uca, Maik Herbig, Jochen Guck, Ingolf Sack\ Real-Time Deformability Cytometry Detects Leukocyte Stiffening After Gadolinium-Based Contrast Agent Exposure\ Invest Radiol 56(12):837–844 (May 29, 2021) \ DOI: 10.1097/rli.0000000000000794
Angelos Filippatos, Bernd Grüber, Julian Lich, Tino Wollmann, Bingquan Zhou, Robert Kuschmierz, Edmund Koch, Juergen Czarske, Maik Gude\ Design and testing of polar-orthotropic multi-layered composites under rotational load\ Materials & Design 207:109853 (May 28, 2021) \ DOI: 10.1016/j.matdes.2021.109853
Dr. Justus A. Kromer, Dr. Andrea Auconi, Prof. Dr. Benjamin M. Friedrich\ Composite search of active particles in three-dimensional space based on non-directional cues\ ChemNanoMat 7(9):1057 (May 26, 2021) \ DOI: 10.1002/cnma.202100156
Carla A. Gonçalves, Michael Larsen, Sascha Jung, Johannes Stratmann, Akiko Nakamura, Marit Leuschner, Lena Hersemann, Rashmiparvathi Keshara, Signe Perlman, Lene Lundvall, Lea Langhoff Thuesen, Kristine Juul Hare, Ido Amit, Anne Jørgensen, Yung Hae Kim, Antonio del Sol, Anne Grapin-Botton\ A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion\ Nat Commun 12(1), 3144 (May 25, 2021) \ DOI: 10.1038/s41467-021-23295-6
A. Solomatina, Y. Kalaidzidis, A. Cezanne, K. Soans, C. Norden, M. Zerial, I. F. Sbalzarini\ Particle-Based Segmentation Of Extended Objects On Curved Biological Membranes\ 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) (May 25, 2021) \ DOI: 10.1109/isbi48211.2021.9434038
Gaia Pigino\ Intraflagellar transport\ Current Biology 31(10):R530–R536 (May 24, 2021) \ DOI: 10.1016/j.cub.2021.03.081
Anja Reusch, Alexander Weber, Maik Thiele, Wolfgang Lehner\ RecipeGM: A Hierarchical Recipe Generation Model\ 2021 IEEE 37th International Conference on Data Engineering Workshops (ICDEW) (May 24, 2021) \ DOI: 10.1109/icdew53142.2021.00012
Annett Ungethum, Lennart Schmidt, Johannes Pietrzyk, Dirk Habich, Wolfgang Lehner\ Mastering the NEC Vector Engine Accelerator for Analytical Query Processing\ 2021 IEEE 37th International Conference on Data Engineering Workshops (ICDEW) (May 24, 2021) \ DOI: 10.1109/icdew53142.2021.00018
Tetsuya Yamamoto, Takahiro Sakaue, Helmut Schiessel\ Slow chromatin dynamics enhances promoter accessibility to transcriptional condensates\ Nucleic Acids Res. 49(9):5017-5027. (May 21, 2021) \ DOI: 10.1093/nar/gkab275
Karen G. Soans, Caren Norden\ Shining a light on extracellular matrix dynamics in vivo\ Seminars in Cell & Developmental Biology 120:85–93 (May 21, 2021) \ DOI: 10.1016/j.semcdb.2021.05.008
Hidde D. Vuijk, Holger Merlitz, Michael Lang, Abhinav Sharma, Jens-Uwe Sommer\ Chemotaxis of Cargo-Carrying Self-Propelled Particles\ Phys. Rev. Lett. 126(20), 208102 (May 21, 2021) \ DOI: 10.1103/physrevlett.126.208102
Kamran Hosseini, Annika Frenzel, Elisabeth Fischer-Friedrich\ EMT changes actin cortex rheology in a cell-cycle-dependent manner\ Biophysical Journal, In Press, Corrected Proof (May 20, 2021) \ DOI: 10.1016/j.bpj.2021.05.006
Chartier NT, Mukherjee A, Pfanzelter J, Fürthauer S, Larson BT, Fritsch AW, Amini R, Kreysing M, Jülicher F, Grill SW\ A hydraulic instability drives the cell death decision in the nematode germline\ Nature Physics, (May 20, 2021) \ DOI: 10.1038/s41567-021-01235-x
Middelkoop TC, Garcia-Baucells J, Quintero-Cadena P, Pimpale LG, Yazdi S, Sternberg PW, Gross P, Grill SW\ CYK-1/Formin activation in cortical RhoA signaling centers promotes organismal left–right symmetry breaking\ PNAS May 18, 2021 118 (20) e2021814118 (May 18, 2021) \ DOI: 10.1073/pnas.2021814118
Jiawei Sun, Nektarios Koukourakis, Jochen Guck, Jürgen W. Czarske\ Rapid computational cell-rotation around arbitrary axes in 3D with multi-core fiber\ Biomed. Opt. Express 12(6):3423–3437 (May 17, 2021) \ DOI: 10.1364/BOE.423035
Oliver Rothkamm, Johannes Gürtler, Jürgen Czarske, Robert Kuschmierz\ Dense U-Net for Limited Angle Tomography of Sound Pressure Fields\ Applied Sciences 11(10):4570 (May 17, 2021) \ DOI: 10.3390/app11104570
Alena Uvizl, Ruchi Goswami, Shanil Durgeshkumar Gandhi, Martina Augsburg, Frank Buchholz, Jochen Guck, Jörg Mansfeld, Salvatore Girardo\ Efficient and gentle delivery of molecules into cells with different elasticity via Progressive Mechanoporation\ Lab Chip 21(12):2437–2452 (May 12, 2021) \ DOI: 10.1039/d0lc01224f
Charlie Duclut, Jacques Prost, Frank Jülicher\ Hydraulic and Electric Control of Cell Spheroids\ PNAS May 11, 2021 118 (19) e2021972118, (May 11, 2021) \ DOI: 10.1073/pnas.2021972118
Striggow F, Nadporozhskaia L, Friedrich BM, Schmidt OG, Medina-Sánchez M\ Micromotor-mediated sperm constrictions for improved swimming performance\ Eur. Phys. J. E 44:67, 20221 (May 11, 2021) \ DOI: 10.1140/epje/s10189-021-00050-9
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Luo W, Lehmann A, Yang Y, Dachselt R\ Investigating Document Layout and Placement Strategies for Collaborative Sensemaking in Augmented Reality\ Extended Abstracts of the 2021 CHI Conference on Human Factors in Computing Systems (CHI EA ’21). Association for Computing Machinery, Article 456, 1–7. (May 8, 2021) \ DOI: 10.1145/3411763.3451588
Marc Satkowski, Wolfgang Büschel, Raimund Dachselt\ Experiences with User Studies in Augmented Reality\ CHI 2021 Workshop on Evaluating User Experiences in Mixed Reality, (May 7, 2021) \ DOI: 10.48550/arXiv.2104.03795
Barrett Ens, Benjamin Bach, Maxime Cordeil, Ulrich Engelke, Marcos Serrano, Wesley Willett, Arnaud Prouzeau6,, Christoph Anthes, Wolfgang Büschel, Cody Dunne, Tim Dwyer, Jens Grubert, Jason H. Haga, Nurit Kirshenbaum, Dylan Kobayashi, Tica Lin, Monsurat Olaosebikan, Fabian Pointecker, David Saffo, Nazmus Saquib, Dieter Schmalstieg, Danielle Albers Szafir, Matthew Whitlock, Yalong Yang\ Grand Challenges in Immersive Analytics\ Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 459, 1–17. (May 7, 2021) \ DOI: 10.1145/3411764.3446866
Satkowski M, Dachselt R\ Investigating the Impact of Real-World Environments on the Perception of 2D Visualizations in Augmented Reality\ Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 522, 1–15. (May 6, 2021) \ DOI: 10.1145/3411764.3445330
Langner R, Satkowski M, Büschel W, Dachselt R\ MARVIS: Combining Mobile Devices and Augmented Reality for Visual Data Analysis\ Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 468, 1–17. (May 6, 2021) \ DOI: 10.1145/3411764.3445593
Büschel W, Lehmann A, Dachselt R\ MIRIA: A Mixed Reality Toolkit for the In-Situ Visualization and Analysis of Spatio-Temporal Interaction Data\ Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems (CHI ’21). Association for Computing Machinery, Article 470, 1–15. (May 6, 2021) \ DOI: 10.1145/3411764.3445651
Tatiana Tiago, Barbara Hummel, Federica F. Morelli, Valentina Basile, Jonathan Vinet, Veronica Galli, Laura Mediani, Francesco Antoniani, Silvia Pomella, Matteo Cassandri, Maria Giovanna Garone, Beatrice Silvestri, Marco Cimino, Giovanna Cenacchi, Roberta Costa, Vincent Mouly, Ina Poser, Esti Yeger-Lotem, Alessandro Rosa, Simon Alberti, Rossella Rota, Anat Ben-Zvi, Ritwick Sawarkar, Serena Carra\ Small heat-shock protein HSPB3 promotes myogenesis by regulating the lamin B receptor\ Cell Death Dis 12(5), 452 (May 6, 2021) \ DOI: 10.1038/s41419-021-03737-1
Marco Salvalaglio, Axel Voigt, Zhi-Feng Huang, Ken R. Elder\ Mesoscale Defect Motion in Binary Systems: Effects of Compositional Strain and Cottrell Atmospheres\ Phys. Rev. Lett. 126(18), 185502 (May 6, 2021) \ DOI: 10.1103/physrevlett.126.185502
M Sanchez Miranda, R Lyttleton, P H Siu, S Diez, H Linke, A P Micolich\ Prospects for single-molecule electrostatic detection in molecular motor gliding motility assays\ New J. Phys. 23(6):065003 (May 4, 2021) \ DOI: 10.1088/1367-2630/abfdf5
Jörg Pawelke, Michael Brand, Stefan Hans, Katalin Hideghéty, Leonhard Karsch, Elisabeth Lessmann, Steffen Löck, Michael Schürer, Emília Rita Szabó, Elke Beyreuther\ Electron dose rate and oxygen depletion protect zebrafish embryos from radiation damage\ Radiother Oncol 158:7–12 (May 2021) \ DOI: 10.1016/j.radonc.2021.02.003
Gabriel G. Martins, Fabrice P. Cordelières, Julien Colombelli, Rocco D’Antuono, Ofra Golani, Romain Guiet, Robert Haase, Anna H. Klemm, Marion Louveaux, Perrine Paul-Gilloteaux, Jean-Yves Tinevez, Kota Miura\ Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists\ F1000Res 10:334 (Apr 30, 2021) \ DOI: 10.12688/f1000research.25485.1
- (Alumni Group) Robert Haase
Yong Xu, Michelle Patino Gaillez, Rebecca Rothe, Sandra Hauser, Dagmar Voigt, Jens Pietzsch, Yixin Zhang\ Conductive Hydrogels with Dynamic Reversible Networks for Biomedical Applications\ Advanced Healthcare Materials (Apr 30, 2021) \ DOI: 10.1002/adhm.202100012
Arang Rhie, Shane A. McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L. Gedman, Lindsey J. Cantin, Francoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C. Vernes, Tanya M. Lama, Frank Grutzner, Wesley C. Warren, Christopher N. Balakrishnan, Dave Burt, Julia M. George, Matthew T. Biegler, David Iorns, Andrew Digby, Daryl Eason, Bruce Robertson, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F. Kautt, Paolo Franchini, H. William Detrich, Hannes Svardal, Maximilian Wagner, Gavin J. P. Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T. Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B. Kingan, Richard Hall, Zev Kronenberg, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E. Green, Nicholas H. Putnam, Ivo Gut, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Robel E. Dagnew, Dengfeng Guan, Sarah E. London, David F. Clayton, Claudio V. Mello, Samantha R. Friedrich, Peter V. Lovell, Ekaterina Osipova, Farooq O. Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Michael Hiller, Yang Zhou, Robert S. Harris, Kateryna D. Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal Martin, Kevin Howe, Paul Flicek, Brian P. Walenz, Woori Kwak, Hiram Clawson, Mark Diekhans, Luis Nassar, Benedict Paten, Robert H. S. Kraus, Andrew J. Crawford, M. Thomas P. Gilbert, Guojie Zhang, Byrappa Venkatesh, Robert W. Murphy, Klaus-Peter Koepfli, Beth Shapiro, Warren E. Johnson, Federica Di Palma, Tomas Marques-Bonet, Emma C. Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A. Ryder, David Haussler, Stephen J. O’Brien, Jonas Korlach, Harris A. Lewin, Kerstin Howe, Eugene W. Myers, Richard Durbin, Adam M. Phillippy, Erich D. Jarvis\ Towards complete and error-free genome assemblies of all vertebrate species\ Nature 592(7856):737–746 (Apr 28, 2021) \ DOI: 10.1038/s41586-021-03451-0
Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, Samara Brown, Marco Rosario Capodiferro, Farooq O. Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vania Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis\ Complete vertebrate mitogenomes reveal widespread repeats and gene duplications\ Genome Biol 22(1), 120 (Apr 28, 2021) \ DOI: 10.1186/s13059-021-02336-9
Maximina H Yun, Toshinori Hayashi, Andras Simon\ Standardized gene and genetic nomenclature for the newt Pleurodeles waltl\ Dev Dyn 251(6):911-912 (Apr 28, 2021) \ DOI: 10.1002/dvdy.355
Jiawei Sun, Nektarios Koukourakis, and Jürgen W. Czarske\ Complex Wavefront Shaping through a Multi-Core Fiber\ Appl. Sci. 2021, 11, 3949 (Apr 27, 2021) \ DOI: 10.3390/app11093949
C. Hoyer, D. Prousalis, L. Wetzel, R. Riaz, Jens Wagner, F. Julicher, F. Ellinger\ Mutual Synchronization with 24 GHz Oscillators\ 2021 IEEE International Symposium on Circuits and Systems (ISCAS) (Apr 27, 2021) \ DOI: 10.1109/iscas51556.2021.9401555
Sarah Alaghbari, Annett Mitschick, Gregor Blichmann, Martin Voigt, Raimund Dachselt\ A User-Centered Approach to Gamify the Manual Creation of Training Data for Machine Learning\ i-com 20(1):33–48 (Apr 23, 2021) \ DOI: 10.1515/icom-2020-0030
Yong Xu, Rebecca Rothe, Dagmar Voigt, Sandra Hauser, Meiying Cui, Takuya Miyagawa, Michelle Patino Gaillez, Thomas Kurth, Martin Bornhäuser, Jens Pietzsch, Yixin Zhang\ Convergent synthesis of diversified reversible network leads to liquid metal-containing conductive hydrogel adhesives\ Nature Communications (Apr 23, 2021) \ DOI: 10.1038/s41467-021-22675-2
Samhita P. Banavar, Emmet K. Carn, Payam Rowghanian, Georgina Stooke-Vaughan, Sangwoo Kim, Otger Campàs*\ Mechanical control of tissue shape and morphogenetic flows during vertebrate body axis elongation\ Scientific Reports 11 (1), 1–14 (Apr 21, 2021) \ * corresponding author \ DOI: 10.1038/s41598-021-87672-3
Kelvin C.M. Lee, Jochen Guck, Keisuke Goda, Kevin K. Tsia\ Toward Deep Biophysical Cytometry: Prospects and Challenges\ Trends in Biotechnology 39(12):1249–1262 (Apr 21, 2021) \ DOI: 10.1016/j.tibtech.2021.03.006
Tom M. J. Evers, Liam J. Holt, Simon Alberti, Alireza Mashaghi\ Reciprocal regulation of cellular mechanics and metabolism\ Nat Metab 3(4):456–468 (Apr 19, 2021) \ DOI: 10.1038/s42255-021-00384-w
Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase\ Developing open-source software for bioimage analysis: opportunities and challenges\ F1000Res 10:302 (Apr 19, 2021) \ DOI: 10.12688/f1000research.52531.1
- (Alumni Group) Robert Haase
Lucas von Chamier, Romain F. Laine, Johanna Jukkala, Christoph Spahn, Daniel Krentzel, Elias Nehme, Martina Lerche, Sara Hernández-Pérez, Pieta K. Mattila, Eleni Karinou, Séamus Holden, Ahmet Can Solak, Alexander Krull, Tim-Oliver Buchholz, Martin L. Jones, Loïc A. Royer, Christophe Leterrier, Yoav Shechtman, Florian Jug, Mike Heilemann, Guillaume Jacquemet, Ricardo Henriques\ Democratising deep learning for microscopy with ZeroCostDL4Mic\ Nat Commun 12(1), 2276 (Apr 15, 2021) \ DOI: 10.1038/s41467-021-22518-0
Suryanarayana Maddu, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini\ Learning physically consistent differential equation models from data using group sparsity\ Phys. Rev. E 103, 042310 (Apr 13, 2021) \ DOI: 10.1103/PhysRevE.103.042310
Sangwoo Kim, Marie Pochitaloff, Georgina A. Stooke-Vaughan, Otger Campàs*\ Embryonic tissues as active foams\ Nat. Phys. (Apr 12, 2021) \ * corresponding author \ DOI: 10.1038/s41567-021-01215-1
Lange S, Friedrich BM\ Sperm chemotaxis in marine species is optimal at physiological flow rates according theory of filament surfing\ PLoS Comp. Biol., 17(4): e1008826 (Apr 12, 2021) \ DOI: 10.1371/journal.pcbi.1008826
Christel Baier, Maria Christakis, Timo P. Gros, David Groß, Stefan Gumhold, Holger Hermanns, Jörg Hoffmann, Michaela Klauck\ Lab Conditions for Research on Explainable Automated Decisions\ Lecture Notes in Computer Science 83–90 (Apr 12, 2021) \ DOI: 10.1007/978-3-030-73959-1_8
Wenjie Wang, Florian Lemke, Matthias C. Wapler, Ulrike Wallrabe, Jürgen W. Czarske, Nektarios Koukourakis\ 3D-scanning microscopy with adaptive lenses and prisms for zebrafish studies\ J. Optical Microsystems 1(02) (Apr 10, 2021) \ DOI: 10.1117/1.jom.1.2.024501
Solovev A, Friedrich BM\ Lagrangian Mechanics of Active Systems\ Eur. Phys. J. E, 44:49, 2021 (Apr 8, 2021) \ DOI: 10.1140/epje/s10189-021-00016-x
Novak M, Friedrich BM\ Bayesian gradient sensing in the presence of rotational diffusion\ New J. Phys., 23:043026 (Apr 8, 2021) \ DOI: 10.1088/1367-2630/abdb70
Adeeba Fathima, César Augusto Quintana-Cataño, Christoph Heintze, Michael Schlierf\ Precision of fiducial marker alignment for correlative super‐resolution fluorescence and transmission electron microscopy\ Discov Mater 1(1), 11 (Apr 8, 2021) \ DOI: 10.1007/s43939-021-00011-1
Abin Biswas, Kyoohyun Kim, Gheorghe Cojoc, Jochen Guck, Simone Reber\ The Xenopus spindle is as dense as the surrounding cytoplasm\ Developmental Cell 56(7):967–975.e5 (Apr 5, 2021) \ DOI: 10.1016/j.devcel.2021.03.013
Stephanie Spannl, Tomasz Buhl, Ioannis Nellas, Salma A Zeidan, K Venkatesan Iyer, Helena Khaliullina, Carsten Schultz, André Nadler, Natalie A Dye, Suzanne Eaton\ Glycolysis regulates Hedgehog signalling via the plasma membrane potential\ The EMBO Journal 40(7) (Apr 1, 2021) \ DOI: 10.15252/embj.2021107925
Debarghya Banerjee, Vincenzo Vitelli, Frank Jülicher, Piotr Surówka\ Active Viscoelasticity of Odd Materials\ Phys. Rev. Lett. 126, 138001, (Mar 29, 2021) \ DOI: 10.1103/PhysRevLett.126.138001
Joan-Carles Escolano, Anna V. Taubenberger, Shada Abuhattum, Christine Schweitzer, Aleeza Farrukh, Aránzazu del Campo, Clare E. Bryant, Jochen Guck\ Compliant Substrates Enhance Macrophage Cytokine Release and NLRP3 Inflammasome Formation During Their Pro-Inflammatory Response\ Front. Cell Dev. Biol. 9 (Mar 29, 2021) \ DOI: 10.3389/fcell.2021.639815
Dye NA, Popović M, Venkatesan Iyer K, Fuhrmann JF, Piscitello-Gómez R, Eaton S, Jülicher F\ Self-organized patterning of cell morphology via mechanosensitive feedback\ eLife 2021;10:e57964 (Mar 26, 2021) \ DOI: 10.7554/eLife.57964
Claudio Durán, Sara Ciucci, Alessandra Palladini, Umer Z. Ijaz, Antonio G. Zippo, Francesco Paroni Sterbini, Luca Masucci, Giovanni Cammarota, Gianluca Ianiro, Pirjo Spuul, Michael Schroeder, Stephan W. Grill, Bryony N. Parsons, D. Mark Pritchard, Brunella Posteraro, Maurizio Sanguinetti, Giovanni Gasbarrini, Antonio Gasbarrini, Carlo Vittorio Cannistraci\ Nonlinear machine learning pattern recognition and bacteria-metabolite multilayer network analysis of perturbed gastric microbiome\ Nat Commun 12, 1926 (Mar 26, 2021) \ DOI: 10.1038/s41467-021-22135-x
K. Venkatesan Iyer, Anna Taubenberger, Salma Ahmed Zeidan, Natalie A. Dye, Suzanne Eaton, Frank Jülicher\ Apico-Basal Cell Compression Regulates Lamin A/C Levels in Epithelial Tissues\ Nat Commun 12, 1756, (Mar 25, 2021) \ DOI: 10.1038/s41467-021-22010-9
Nicole Berndt, Claudia C. Bippes, Irene Michalk, Dominik Bachmann, Jennifer Bachmann, Edinson Puentes-Cala, Tabea Bartsch, Liliana R. Loureiro, Alexandra Kegler, Ralf Bergmann, Joanne K. Gross, Tim Gross, Biji T. Kurien, R. Hal Scofield, A. Darise Farris, Judith A. James, Marc Schmitz, Karim Fahmy, Anja Feldmann, Claudia Arndt, Michael P. Bachmann\ Two Be or Not Two Be: The Nuclear Autoantigen La/SS-B Is Able to Form Dimers and Oligomers in a Redox Dependent Manner\ IJMS 22(7):3377 (Mar 25, 2021) \ DOI: 10.3390/ijms22073377
Daniel J. Klionsky, Amal Kamal Abdel-Aziz, Sara Abdelfatah, Mahmoud Abdellatif, Asghar Abdoli, Steffen Abel, Hagai Abeliovich, Marie H. Abildgaard, Yakubu Princely Abudu, Abraham Acevedo-Arozena, Iannis E. Adamopoulos, Khosrow Adeli, Timon E. Adolph, Annagrazia Adornetto, Elma Aflaki, Galila Agam, Anupam Agarwal, Bharat B. Aggarwal, Maria Agnello, Patrizia Agostinis, Javed N. Agrewala, Alexander Agrotis, Patricia V. Aguilar, S. Tariq Ahmad, Zubair M. Ahmed, Ulises Ahumada-Castro, Sonja Aits, Shu Aizawa, Yunus Akkoc, Tonia Akoumianaki, Hafize Aysin Akpinar, Ahmed M. Al-Abd, Lina Al-Akra, Abeer Al-Gharaibeh, Moulay A. Alaoui-Jamali, Simon Alberti, Elísabet Alcocer-Gómez, Cristiano Alessandri, Muhammad Ali, M. Abdul Alim Al-Bari, Saeb Aliwaini, Javad Alizadeh, Eugènia Almacellas, Alexandru Almasan, Alicia Alonso, Guillermo D. Alonso, Nihal Altan-Bonnet, Dario C. Altieri, Élida M. C. Álvarez, Sara Alves, Cristine Alves da Costa, Mazen M. 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Shenuarin Bhuiyan, Sujit Kumar Bhutia, Lanrong Bi, Xiaolin Bi, Trevor J. Biden, Krikor Bijian, Viktor A. Billes, Nadine Binart, Claudia Bincoletto, Asa B. Birgisdottir, Geir Bjorkoy, Gonzalo Blanco, Ana Blas-Garcia, Janusz Blasiak, Robert Blomgran, Klas Blomgren, Janice S. Blum, Emilio Boada-Romero, Mirta Boban, Kathleen Boesze-Battaglia, Philippe Boeuf, Barry Boland, Pascale Bomont, Paolo Bonaldo, Srinivasa Reddy Bonam, Laura Bonfili, Juan S. Bonifacino, Brian A. Boone, Martin D. Bootman, Matteo Bordi, Christoph Borner, Beat C. Bornhauser, Gautam Borthakur, Jürgen Bosch, Santanu Bose, Luis M. Botana, Juan Botas, Chantal M. Boulanger, Michael E. Boulton, Mathieu Bourdenx, Benjamin Bourgeois, Nollaig M. Bourke, Guilhem Bousquet, Patricia Boya, Peter V. Bozhkov, Luiz H. M. Bozi, Tolga O. Bozkurt, Doug E. Brackney, Christian H. Brandts, Ralf J. Braun, Gerhard H. Braus, Roberto Bravo-Sagua, José M. Bravo-San Pedro, Patrick Brest, Marie-Agnès Bringer, Alfredo Briones-Herrera, V. Courtney Broaddus, Peter Brodersen, Jeffrey L. Brodsky, Steven L. Brody, Paola G. Bronson, Jeff M. Bronstein, Carolyn N. Brown, Rhoderick E. Brown, Patricia C. Brum, John H. Brumell, Nicola Brunetti-Pierri, Daniele Bruno, Robert J. Bryson-Richardson, Cecilia Bucci, Carmen Buchrieser, Marta Bueno, Laura Elisa Buitrago-Molina, Simone Buraschi, Shilpa Buch, J. Ross Buchan, Erin M. Buckingham, Hikmet Budak, Mauricio Budini, Geert Bultynck, Florin Burada, Joseph R. Burgoyne, M. Isabel Burón, Victor Bustos, Sabrina Büttner, Elena Butturini, Aaron Byrd, Isabel Cabas, Sandra Cabrera-Benitez, Ken Cadwell, Jingjing Cai, Lu Cai, Qian Cai, Montserrat Cairó, Jose A. Calbet, Guy A. Caldwell, Kim A. Caldwell, Jarrod A. Call, Riccardo Calvani, Ana C. Calvo, Miguel Calvo-Rubio Barrera, Niels OS Camara, Jacques H. Camonis, Nadine Camougrand, Michelangelo Campanella, Edward M. Campbell, François-Xavier Campbell-Valois, Silvia Campello, Ilaria Campesi, Juliane C. 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Cayuela, Paula Cebollada Rica, Valentina Cecarini, Francesco Cecconi, Marzanna Cechowska-Pasko, Simone Cenci, Victòria Ceperuelo-Mallafré, João J. Cerqueira, Janete M. Cerutti, Davide Cervia, Vildan Bozok Cetintas, Silvia Cetrullo, Han-Jung Chae, Andrei S. Chagin, Chee-Yin Chai, Gopal Chakrabarti, Oishee Chakrabarti, Tapas Chakraborty, Trinad Chakraborty, Mounia Chami, Georgios Chamilos, David W. Chan, Edmond Y. W. Chan, Edward D. Chan, H.Y. Edwin Chan, Helen H. Chan, Hung Chan, Matthew T.V. Chan, Yau Sang Chan, Partha K. Chandra, Chih-Peng Chang, Chunmei Chang, Hao-Chun Chang, Kai Chang, Jie Chao, Tracey Chapman, Nicolas Charlet-Berguerand, Samrat Chatterjee, Shail K. Chaube, Anu Chaudhary, Santosh Chauhan, Edward Chaum, Frédéric Checler, Michael E. Cheetham, Chang-Shi Chen, Guang-Chao Chen, Jian-Fu Chen, Liam L. Chen, Leilei Chen, Lin Chen, Mingliang Chen, Mu-Kuan Chen, Ning Chen, Quan Chen, Ruey-Hwa Chen, Shi Chen, Wei Chen, Weiqiang Chen, Xin-Ming Chen, Xiong-Wen Chen, Xu Chen, Yan Chen, Ye-Guang Chen, Yingyu Chen, Yongqiang Chen, Yu-Jen Chen, Yue-Qin Chen, Zhefan Stephen Chen, Zhi Chen, Zhi-Hua Chen, Zhijian J. Chen, Zhixiang Chen, Hanhua Cheng, Jun Cheng, Shi-Yuan Cheng, Wei Cheng, Xiaodong Cheng, Xiu-Tang Cheng, Yiyun Cheng, Zhiyong Cheng, Zhong Chen, Heesun Cheong, Jit Kong Cheong, Boris V. Chernyak, Sara Cherry, Chi Fai Randy Cheung, Chun Hei Antonio Cheung, King-Ho Cheung, Eric Chevet, Richard J. Chi, Alan Kwok Shing Chiang, Ferdinando Chiaradonna, Roberto Chiarelli, Mario Chiariello, Nathalia Chica, Susanna Chiocca, Mario Chiong, Shih-Hwa Chiou, Abhilash I. Chiramel, Valerio Chiurchiù, Dong-Hyung Cho, Seong-Kyu Choe, Augustine M.K. Choi, Mary E. Choi, Kamalika Roy Choudhury, Norman S. Chow, Charleen T. Chu, Jason P. Chua, John Jia En Chua, Hyewon Chung, Kin Pan Chung, Seockhoon Chung, So-Hyang Chung, Yuen-Li Chung, Valentina Cianfanelli, Iwona A. Ciechomska, Mariana Cifuentes, Laura Cinque, Sebahattin Cirak, Mara Cirone, Michael J. Clague, Robert Clarke, Emilio Clementi, Eliana M. Coccia, Patrice Codogno, Ehud Cohen, Mickael M. Cohen, Tania Colasanti, Fiorella Colasuonno, Robert A. Colbert, Anna Colell, Miodrag Čolić, Nuria S. Coll, Mark O. Collins, María I. Colombo, Daniel A. Colón-Ramos, Lydie Combaret, Sergio Comincini, Márcia R. Cominetti, Antonella Consiglio, Andrea Conte, Fabrizio Conti, Viorica Raluca Contu, Mark R. Cookson, Kevin M. Coombs, Isabelle Coppens, Maria Tiziana Corasaniti, Dale P. Corkery, Nils Cordes, Katia Cortese, Maria do Carmo Costa, Sarah Costantino, Paola Costelli, Ana Coto-Montes, Peter J. Crack, Jose L. Crespo, Alfredo Criollo, Valeria Crippa, Riccardo Cristofani, Tamas Csizmadia, Antonio Cuadrado, Bing Cui, Jun Cui, Yixian Cui, Yong Cui, Emmanuel Culetto, Andrea C. Cumino, Andrey V. Cybulsky, Mark J. Czaja, Stanislaw J. Czuczwar, Stefania D’Adamo, Marcello D’Amelio, Daniela D’Arcangelo, Andrew C. D’Lugos, Gabriella D’Orazi, James A. da Silva, Hormos Salimi Dafsari, Ruben K. Dagda, Yasin Dagdas, Maria Daglia, Xiaoxia Dai, Yun Dai, Yuyuan Dai, Jessica Dal Col, Paul Dalhaimer, Luisa Dalla Valle, Tobias Dallenga, Guillaume Dalmasso, Markus Damme, Ilaria Dando, Nico P. Dantuma, April L. Darling, Hiranmoy Das, Srinivasan Dasarathy, Santosh K. Dasari, Srikanta Dash, Oliver Daumke, Adrian N. Dauphinee, Jeffrey S. Davies, Valeria A. Dávila, Roger J. Davis, Tanja Davis, Sharadha Dayalan Naidu, Francesca De Amicis, Karolien De Bosscher, Francesca De Felice, Lucia De Franceschi, Chiara De Leonibus, Mayara G. de Mattos Barbosa, Guido R.Y. De Meyer, Angelo De Milito, Cosimo De Nunzio, Clara De Palma, Mauro De Santi, Claudio De Virgilio, Daniela De Zio, Jayanta Debnath, Brian J. DeBosch, Jean-Paul Decuypere, Mark A. Deehan, Gianluca Deflorian, James DeGregori, Benjamin Dehay, Gabriel Del Rio, Joe R. Delaney, Lea M. D. Delbridge, Elizabeth Delorme-Axford, M. Victoria Delpino, Francesca Demarchi, Vilma Dembitz, Nicholas D. Demers, Hongbin Deng, Zhiqiang Deng, Joern Dengjel, Paul Dent, Donna Denton, Melvin L. DePamphilis, Channing J. Der, Vojo Deretic, Albert Descoteaux, Laura Devis, Sushil Devkota, Olivier Devuyst, Grant Dewson, Mahendiran Dharmasivam, Rohan Dhiman, Diego di Bernardo, Manlio Di Cristina, Fabio Di Domenico, Pietro Di Fazio, Alessio Di Fonzo, Giovanni Di Guardo, Gianni M. Di Guglielmo, Luca Di Leo, Chiara Di Malta, Alessia Di Nardo, Martina Di Rienzo, Federica Di Sano, George Diallinas, Jiajie Diao, Guillermo Diaz-Araya, Inés Díaz-Laviada, Jared M. Dickinson, Marc Diederich, Mélanie Dieudé, Ivan Dikic, Shiping Ding, Wen-Xing Ding, Luciana Dini, Jelena Dinić, Miroslav Dinic, Albena T. Dinkova-Kostova, Marc S. Dionne, Jörg H.W. Distler, Abhinav Diwan, Ian M.C. Dixon, Mojgan Djavaheri-Mergny, Ina Dobrinski, Oxana Dobrovinskaya, Radek Dobrowolski, Renwick C.J. Dobson, Jelena Đokić, Serap Dokmeci Emre, Massimo Donadelli, Bo Dong, Xiaonan Dong, Zhiwu Dong, Gerald W. Dorn, Volker Dotsch, Huan Dou, Juan Dou, Moataz Dowaidar, Sami Dridi, Liat Drucker, Ailian Du, Caigan Du, Guangwei Du, Hai-Ning Du, Li-Lin Du, André du Toit, Shao-Bin Duan, Xiaoqiong Duan, Sónia P. Duarte, Anna Dubrovska, Elaine A. Dunlop, Nicolas Dupont, Raúl V. Durán, Bilikere S. Dwarakanath, Sergey A. Dyshlovoy, Darius Ebrahimi-Fakhari, Leopold Eckhart, Charles L. Edelstein, Thomas Efferth, Eftekhar Eftekharpour, Ludwig Eichinger, Nabil Eid, Tobias Eisenberg, N. Tony Eissa, Sanaa Eissa, Miriam Ejarque, Abdeljabar El Andaloussi, Nazira El-Hage, Shahenda El-Naggar, Anna Maria Eleuteri, Eman S. El-Shafey, Mohamed Elgendy, Aristides G. Eliopoulos, María M. Elizalde, Philip M. Elks, Hans-Peter Elsasser, Eslam S. Elsherbiny, Brooke M. Emerling, N. C. Tolga Emre, Christina H. Eng, Nikolai Engedal, Anna-Mart Engelbrecht, Agnete S.T. Engelsen, Jorrit M. Enserink, Ricardo Escalante, Audrey Esclatine, Mafalda Escobar-Henriques, Eeva-Liisa Eskelinen, Lucile Espert, Makandjou-Ola Eusebio, Gemma Fabrias, Cinzia Fabrizi, Antonio Facchiano, Francesco Facchiano, Bengt Fadeel, Claudio Fader, Alex C. Faesen, W. Douglas Fairlie, Alberto Falcó, Bjorn H. Falkenburger, Daping Fan, Jie Fan, Yanbo Fan, Evandro F. Fang, Yanshan Fang, Yognqi Fang, Manolis Fanto, Tamar Farfel-Becker, Mathias Faure, Gholamreza Fazeli, Anthony O. Fedele, Arthur M. Feldman, Du Feng, Jiachun Feng, Lifeng Feng, Yibin Feng, Yuchen Feng, Wei Feng, Thais Fenz Araujo, Thomas A. Ferguson, Álvaro F. Fernández, Jose C. Fernandez-Checa, Sonia Fernández-Veledo, Alisdair R. Fernie, Anthony W. Ferrante, Alessandra Ferraresi, Merari F. Ferrari, Julio C.B. 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Ganley, Feng Gao, Hui Gao, Minghui Gao, Ping Gao, Shou-Jiang Gao, Wentao Gao, Xiaobo Gao, Ana Garcera, Maria Noé Garcia, Verónica E. Garcia, Francisco García-Del Portillo, Vega Garcia-Escudero, Aracely Garcia-Garcia, Marina Garcia-Macia, Diana García-Moreno, Carmen Garcia-Ruiz, Patricia García-Sanz, Abhishek D. Garg, Ricardo Gargini, Tina Garofalo, Robert F. Garry, Nils C. Gassen, Damian Gatica, Liang Ge, Wanzhong Ge, Ruth Geiss-Friedlander, Cecilia Gelfi, Pascal Genschik, Ian E. Gentle, Valeria Gerbino, Christoph Gerhardt, Kyla Germain, Marc Germain, David A. Gewirtz, Elham Ghasemipour Afshar, Saeid Ghavami, Alessandra Ghigo, Manosij Ghosh, Georgios Giamas, Claudia Giampietri, Alexandra Giatromanolaki, Gary E. Gibson, Spencer B. Gibson, Vanessa Ginet, Edward Giniger, Carlotta Giorgi, Henrique Girao, Stephen E. Girardin, Mridhula Giridharan, Sandy Giuliano, Cecilia Giulivi, Sylvie Giuriato, Julien Giustiniani, Alexander Gluschko, Veit Goder, Alexander Goginashvili, Jakub Golab, David C. Goldstone, Anna Golebiewska, Luciana R. Gomes, Rodrigo Gomez, Rubén Gómez-Sánchez, Maria Catalina Gomez-Puerto, Raquel Gomez-Sintes, Qingqiu Gong, Felix M. Goni, Javier González-Gallego, Tomas Gonzalez-Hernandez, Rosa A. Gonzalez-Polo, Jose A. Gonzalez-Reyes, Patricia González-Rodríguez, Ing Swie Goping, Marina S. Gorbatyuk, Nikolai V. Gorbunov, Kıvanç Görgülü, Roxana M. Gorojod, Sharon M. Gorski, Sandro Goruppi, Cecilia Gotor, Roberta A. Gottlieb, Illana Gozes, Devrim Gozuacik, Martin Graef, Markus H. Gräler, Veronica Granatiero, Daniel Grasso, Joshua P. Gray, Douglas R. Green, Alexander Greenhough, Stephen L. Gregory, Edward F. Griffin, Mark W. Grinstaff, Frederic Gros, Charles Grose, Angelina S. Gross, Florian Gruber, Paolo Grumati, Tilman Grune, Xueyan Gu, Jun-Lin Guan, Carlos M. 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Fielding Hejtmancik, Gudmundur Vignir Helgason, Vanessa Henkel, Marc Herb, Alexander Hergovich, Anna Herman-Antosiewicz, Agustín Hernández, Carlos Hernandez, Sergio Hernandez-Diaz, Virginia Hernandez-Gea, Amaury Herpin, Judit Herreros, Javier H. Hervás, Daniel Hesselson, Claudio Hetz, Volker T. Heussler, Yujiro Higuchi, Sabine Hilfiker, Joseph A. Hill, William S. Hlavacek, Emmanuel A. Ho, Idy H.T. Ho, Philip Wing-Lok Ho, Shu-Leong Ho, Wan Yun Ho, G. Aaron Hobbs, Mark Hochstrasser, Peter H.M. Hoet, Daniel Hofius, Paul Hofman, Annika Höhn, Carina I. Holmberg, Jose R. Hombrebueno, Chang-Won Hong, Yi-Ren Hong, Lora V. Hooper, Thorsten Hoppe, Rastislav Horos, Yujin Hoshida, I-Lun Hsin, Hsin-Yun Hsu, Bing Hu, Dong Hu, Li-Fang Hu, Ming Chang Hu, Ronggui Hu, Wei Hu, Yu-Chen Hu, Zhuo-Wei Hu, Fang Hua, Jinlian Hua, Yingqi Hua, Chongmin Huan, Canhua Huang, Chuanshu Huang, Chuanxin Huang, Chunling Huang, Haishan Huang, Kun Huang, Michael L.H. Huang, Rui Huang, Shan Huang, Tianzhi Huang, Xing Huang, Yuxiang Jack Huang, Tobias B. Huber, Virginie Hubert, Christian A. Hubner, Stephanie M. Hughes, William E. Hughes, Magali Humbert, Gerhard Hummer, James H. Hurley, Sabah Hussain, Salik Hussain, Patrick J. Hussey, Martina Hutabarat, Hui-Yun Hwang, Seungmin Hwang, Antonio Ieni, Fumiyo Ikeda, Yusuke Imagawa, Yuzuru Imai, Carol Imbriano, Masaya Imoto, Denise M. Inman, Ken Inoki, Juan Iovanna, Renato V. Iozzo, Giuseppe Ippolito, Javier E. Irazoqui, Pablo Iribarren, Mohd Ishaq, Makoto Ishikawa, Nestor Ishimwe, Ciro Isidoro, Nahed Ismail, Shohreh Issazadeh-Navikas, Eisuke Itakura, Daisuke Ito, Davor Ivankovic, Saška Ivanova, Anand Krishnan V. Iyer, José M. Izquierdo, Masanori Izumi, Marja Jäättelä, Majid Sakhi Jabir, William T. Jackson, Nadia Jacobo-Herrera, Anne-Claire Jacomin, Elise Jacquin, Pooja Jadiya, Hartmut Jaeschke, Chinnaswamy Jagannath, Arjen J. Jakobi, Johan Jakobsson, Bassam Janji, Pidder Jansen-Dürr, Patric J. Jansson, Jonathan Jantsch, Sławomir Januszewski, Alagie Jassey, Steve Jean, Hélène Jeltsch-David, Pavla Jendelova, Andreas Jenny, Thomas E. Jensen, Niels Jessen, Jenna L. Jewell, Jing Ji, Lijun Jia, Rui Jia, Liwen Jiang, Qing Jiang, Richeng Jiang, Teng Jiang, Xuejun Jiang, Yu Jiang, Maria Jimenez-Sanchez, Eun-Jung Jin, Fengyan Jin, Hongchuan Jin, Li Jin, Luqi Jin, Meiyan Jin, Si Jin, Eun-Kyeong Jo, Carine Joffre, Terje Johansen, Gail V.W. Johnson, Simon A. Johnston, Eija Jokitalo, Mohit Kumar Jolly, Leo A.B. Joosten, Joaquin Jordan, Bertrand Joseph, Dianwen Ju, Jeong-Sun Ju, Jingfang Ju, Esmeralda Juárez, Delphine Judith, Gábor Juhász, Youngsoo Jun, Chang Hwa Jung, Sung-Chul Jung, Yong Keun Jung, Heinz Jungbluth, Johannes Jungverdorben, Steffen Just, Kai Kaarniranta, Allen Kaasik, Tomohiro Kabuta, Daniel Kaganovich, Alon Kahana, Renate Kain, Shinjo Kajimura, Maria Kalamvoki, Manjula Kalia, Danuta S. Kalinowski, Nina Kaludercic, Ioanna Kalvari, Joanna Kaminska, Vitaliy O. Kaminskyy, Hiromitsu Kanamori, Keizo Kanasaki, Chanhee Kang, Rui Kang, Sang Sun Kang, Senthilvelrajan Kaniyappan, Tomotake Kanki, Thirumala-Devi Kanneganti, Anumantha G. Kanthasamy, Arthi Kanthasamy, Marc Kantorow, Orsolya Kapuy, Michalis V. Karamouzis, Md. Razaul Karim, Parimal Karmakar, Rajesh G. Katare, Masaru Kato, Stefan H.E. Kaufmann, Anu Kauppinen, Gur P. Kaushal, Susmita Kaushik, Kiyoshi Kawasaki, Kemal Kazan, Po-Yuan Ke, Damien J. Keating, Ursula Keber, John H. Kehrl, Kate E. Keller, Christian W. Keller, Jongsook Kim Kemper, Candia M. Kenific, Oliver Kepp, Stephanie Kermorgant, Andreas Kern, Robin Ketteler, Tom G. Keulers, Boris Khalfin, Hany Khalil, Bilon Khambu, Shahid Y. Khan, Vinoth Kumar Megraj Khandelwal, Rekha Khandia, Widuri Kho, Noopur V. Khobrekar, Sataree Khuansuwan, Mukhran Khundadze, Samuel A. Killackey, Dasol Kim, Deok Ryong Kim, Do-Hyung Kim, Dong-Eun Kim, Eun Young Kim, Eun-Kyoung Kim, Hak-Rim Kim, Hee-Sik Kim, Hyung-Ryong Kim, Jeong Hun Kim, Jin Kyung Kim, Jin-Hoi Kim, Joungmok Kim, Ju Hwan Kim, Keun Il Kim, Peter K. Kim, Seong-Jun Kim, Scot R. Kimball, Adi Kimchi, Alec C. Kimmelman, Tomonori Kimura, Matthew A. King, Kerri J. Kinghorn, Conan G. Kinsey, Vladimir Kirkin, Lorrie A. Kirshenbaum, Sergey L. Kiselev, Shuji Kishi, Katsuhiko Kitamoto, Yasushi Kitaoka, Kaio Kitazato, Richard N. Kitsis, Josef T. Kittler, Ole Kjaerulff, Peter S. Klein, Thomas Klopstock, Jochen Klucken, Helene Knævelsrud, Roland L. Knorr, Ben C.B. Ko, Fred Ko, Jiunn-Liang Ko, Hotaka Kobayashi, Satoru Kobayashi, Ina Koch, Jan C. Koch, Ulrich Koenig, Donat Kögel, Young Ho Koh, Masato Koike, Sepp D. Kohlwein, Nur M. Kocaturk, Masaaki Komatsu, Jeannette König, Toru Kono, Benjamin T. Kopp, Tamas Korcsmaros, Gözde Korkmaz, Viktor I. 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Stefan Hans, Daniela Zöller, Juliane Hammer, Johanna Stucke, Sandra Spieß, Gokul Kesavan, Volker Kroehne, Juan Sebastian Eguiguren, Diana Ezhkova, Andreas Petzold, Andreas Dahl, Michael Brand\ Cre-Controlled CRISPR mutagenesis provides fast and easy conditional gene inactivation in zebrafish\ Nature Communications volume 12, Article number: 1125 (Feb 18, 2021) \ DOI: 10.1038/s41467-021-21427-6
Anders S Hansen, Christoph Zechner\ Promoters adopt distinct dynamic manifestations depending on transcription factor context\ Mol Syst Biol 17(2):e9821 (Feb 17, 2021) \ DOI: 10.15252/msb.20209821
Georg Krainer, Timothy J. Welsh, Jerelle A. Joseph, Jorge R. Espinosa, Sina Wittmann, Ella de Csilléry, Akshay Sridhar, Zenon Toprakcioglu, Giedre Gudiškytė, Magdalena A. Czekalska, William E. Arter, Jordina Guillén-Boixet, Titus M. Franzmann, Seema Qamar, Peter St George-Hyslop, Anthony A. Hyman, Rosana Collepardo-Guevara, Simon Alberti, Tuomas P. J. Knowles\ Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions\ Nature Communications volume 12, 1085 (Feb 17, 2021) \ DOI: 10.1038/s41467-021-21181-9
Dimitri Eigel, Romy Schuster, Max J. Männel, Julian Thiele, Martyna J. Panasiuk, Laura C. Andreae, Carmine Varricchio, Andrea Brancale, Petra B. Welzel, Wieland B. Huttner, Carsten Werner, Ben Newland, Katherine R. Long\ Sulfonated cryogel scaffolds for focal delivery in ex-vivo brain tissue cultures\ Biomaterials 271:120712 (Feb 10, 2021) \ DOI: 10.1016/j.biomaterials.2021.120712
Ming Hu, Inês Cebola, Gaelle Carrat, Shuying Jiang, Sameena Nawaz, Amna Khamis, Mickaël Canouil, Philippe Froguel, Anke Schulte, Michele Solimena, Mark Ibberson, Piero Marchetti, Fabian L. Cardenas-Diaz, Paul J. Gadue, Benoit Hastoy, Leonardo Almeida-Souza, Harvey McMahon, Guy A. Rutter\ Chromatin 3D interaction analysis of the STARD10 locus unveils FCHSD2 as a regulator of insulin secretion\ Cell Reports 34(5):108703 (Feb 3, 2021) \ DOI: 10.1016/j.celrep.2021.108703
Benjamin Russig, Mirco Salm, Stefan Gumhold\ GPU-based Raycasting of Hermite Spline Tubes\ 2020 IEEE Visualization Conference (VIS) (Feb 2, 2021) \ DOI: 10.1109/vis47514.2020.00012
Veronica Diez, Sofia Traikov, Kathrin Schmeisser, Akshay Kumar Das Adhikari, Teymuras Vakhtang Kurzchalia\ Glycolate combats massive oxidative stress by restoring redox potential in Caenorhabditis elegans\ Commun Biol 4(1), 151 (Feb 1, 2021) \ DOI: 10.1038/s42003-021-01669-2
Sz Horvát, Carl D Modes\ Connectedness matters: construction and exact random sampling of connected networks\ J. Phys. Complex. 2(1):015008 (Jan 29, 2021) \ DOI: 10.1088/2632-072x/abced5
Samhita P Banavar, Michael Trogdon, Brian Drawert, Tau-Mu Yi, Linda R Petzold, Otger Campàs*\ Coordinating cell polarization and morphogenesis through mechanical feedback\ PLoS computational biology 17 (1), e1007971 (Jan 28, 2021) \ * corresponding author \ DOI: 10.1371/journal.pcbi.1007971
Jonas Ahlers, Ellen M. Adams, Verian Bader, Simone Pezzotti, Konstanze F. Winklhofer, Jörg Tatzelt, Martina Havenith\ The key role of solvent in condensation: Mapping water in liquid-liquid phase-separated FUS\ Biophysical Journal 120(7):1266–1275 (Jan 28, 2021) \ DOI: 10.1016/j.bpj.2021.01.019
James Giammona, Otger Campàs*\ Physical constraints on early blastomere packings\ PLoS Computational Biology 17 (1), e1007994 (Jan 26, 2021) \ * corresponding author \ DOI: 10.1371/journal.pcbi.1007994
Ingo Nitschke, Sebastian Reuther, Axel Voigt\ Vorticity‐stream function approaches are inappropriate to solve the surface Navier‐Stokes equation on a torus\ Proc Appl Math and Mech 20(1) (Jan 25, 2021) \ DOI: 10.1002/pamm.202000006
Karl B. Hoffmann, Ivo F. Sbalzarini\ A robustness measure for singular point and index estimation in discretized orientation and vector fields\ Proc Appl Math and Mech 20(1) (Jan 25, 2021) \ DOI: 10.1002/pamm.202000261
Sarita Hebbar, Malte Lehmann, Sarah Behrens, Catrin Hälsig, Weihua Leng, Michaela Yuan, Sylke Winkler, Elisabeth Knust\ Mutations in the splicing regulator Prp31 lead to retinal degeneration in Drosophila\ Biology Open 10(1) (Jan 25, 2021) \ DOI: 10.1242/bio.052332
Srija Bhagavatula, Elisabeth Knust\ A putative stem-loop structure in Drosophila crumbs is required for mRNA localisation in epithelia and germline cells\ Journal of cell science 134 (2) (Jan 25, 2021) \ DOI: 10.1242/jcs.236497
Ahmet Hazini, Babette Dieringer, Markian Pryshliak, Klaus-Peter Knoch, Lisanne Heimann, Beatrice Tolksdorf, Kathleen Pappritz, Muhammad El-Shafeey, Michele Solimena, Antje Beling, Jens Kurreck, Karin Klingel, Henry Fechner\ miR-375- and miR-1-Regulated Coxsackievirus B3 Has No Pancreas and Heart Toxicity But Strong Antitumor Efficiency in Colorectal Carcinomas\ Human Gene Therapy 32(3-4):216–230 (Jan 22, 2021) \ DOI: 10.1089/hum.2020.228
Julia Sophie Pawlick, Marta Zuzic, Giovanni Pasquini, Anka Swiersy, Volker Busskamp\ MiRNA Regulatory Functions in Photoreceptors\ Front. Cell Dev. Biol. 8 (Jan 21, 2021) \ DOI: 10.3389/fcell.2020.620249
Giovanni Pasquini, Jesus Eduardo Rojo Arias, Patrick Schäfer, Volker Busskamp\ Automated methods for cell type annotation on scRNA-seq data\ Computational and Structural Biotechnology Journal 19:961–969 (Jan 19, 2021) \ DOI: 10.1016/j.csbj.2021.01.015
Richard Wetzel, Sandra Hauser, Weilin Lin, Peggy Berg, Carsten Werner, Jens Pietzsch, Gerd Kempermann, Yixin Zhang\ Screening Arrays of Laminin Peptides on Modified Cellulose for Promotion of Adhesion of Primary Endothelial and Neural Precursor Cells\ Advanced Biology 5(2) (Jan 15, 2021) \ DOI: 10.1002/adbi.201900303
Lida Zoupi, Sam A. Booker, Dimitri Eigel, Carsten Werner, Peter C. Kind, Tara L. Spires-Jones, Ben Newland, Anna C. Williams\ Selective vulnerability of inhibitory networks in multiple sclerosis\ Acta Neuropathol 141(3):415–429 (Jan 15, 2021) \ DOI: 10.1007/s00401-020-02258-z
Keisuke Ishihara, Franziska Decker, Paulo Caldas, James F. Pelletier, Martin Loose, Jan Brugués, Timothy J. Mitchison\ Spatial variation of microtubule depolymerization in large asters\ MBoC 32(9):869–879 (Jan 13, 2021) \ DOI: 10.1091/mbc.e20-11-0723
Tim-Oliver Buchholz, Mangal Prakash, Deborah Schmidt, Alexander Krull, Florian Jug\ DenoiSeg: Joint Denoising and Segmentation\ Lecture Notes in Computer Science 324–337 (Jan 9, 2021) \ DOI: 10.1007/978-3-030-66415-2_21
Vasiliki Tsata, Stephanie Möllmert, Christine Schweitzer, Julia Kolb, Conrad Möckel, Benjamin Böhm, Gonzalo Rosso, Christian Lange, Mathias Lesche, Juliane Hammer, Gokul Kesavan, Dimitris Beis, Jochen Guck, Michael Brand, Daniel Wehner\ A switch in pdgfrb cell-derived ECM composition prevents inhibitory scarring and promotes axon regeneration in the zebrafish spinal cord\ Developmental Cell 56(4):509–524.e9 (Jan 9, 2021) \ DOI: 10.1016/j.devcel.2020.12.009
Sudarshan Gadadhar, Gonzalo Alvarez Viar, Jan Niklas Hansen, An Gong, Aleksandr Kostarev, Côme Ialy-Radio, Sophie Leboucher, Marjorie Whitfield, Ahmed Ziyyat, Aminata Touré, Luis Alvarez, Gaia Pigino, Carsten Janke\ Tubulin glycylation controls axonemal dynein activity, flagellar beat, and male fertility\ Science 371(6525) (Jan 7, 2021) \ DOI: 10.1126/science.abd4914
Hui-Shun Kuan, Wolfram Pönisch, Frank Jülicher, Vasily Zaburdaev\ Continuum Theory of Active Phase Separation in Cellular Aggregates\ Phys. Rev. Lett. 126, 018102, (Jan 4, 2021) \ DOI: 10.1103/PhysRevLett.126.018102
Jordi Comelles, Soumya Ss, Linjie Lu, Emilie Le Maout, S Anvitha, Guillaume Salbreux, Frank Jülicher, Mandar M Inamdar, Daniel Riveline\ Epithelial Colonies In Vitro Elongate through Collective Effects\ eLife 10:e57730, (Jan 4, 2021) \ DOI: 10.7554/elife.57730
Benjamin Dalton, Ivo F. Sbalzarini, Itsuo Hanasaki\ Fundamentals of the logarithmic measure for revealing multimodal diffusion\ Biophys J, Art. No. (Jan 2021) \ DOI: 10.1016/j.bpj.2021.01.001
Karl B. Hoffmann and Ivo F. Sbalzarini\ Robustness of topological defects in discrete domains\ Phys. Rev. E, 103:012602 (Jan 2021) \ DOI: 10.1103/PhysRevE.103.012602
2020
218 publication(s) listed
Basusree Ghosh, Rudrarup Bose, T-Y. Dora Tang\ Can coacervation unify disparate hypotheses in the origin of cellular life?\ Current Opinion in Colloid & Interface Science 52:101415 (Dec 31, 2020) \ DOI: 10.1016/j.cocis.2020.101415
Li Ding, Maciej Paszkowski-Rogacz, Jovan Mircetic, Debojyoti Chakraborty, Frank Buchholz\ The Paf1 complex positively regulates enhancer activity in mouse embryonic stem cells\ Life Sci. Alliance 4(3):e202000792 (Dec 29, 2020) \ DOI: 10.26508/lsa.202000792
Gokul Kesavan, Florian Raible, Mansi Gupta, Anja Machate, Dilara Yilmaz, Michael Brand\ Isthmin1, a secreted signaling protein, acts downstream of diverse embryonic patterning centers in development\ Cell Tissue Res 383(3):987–1002 (Dec 28, 2020) \ DOI: 10.1007/s00441-020-03318-2
Dahmann C, Classen AK\ Charting the unknown currents of cellular flows and forces\ Development, 147(24):dev186403. (Dec 21, 2020) \ DOI: 10.1242/dev.186403
Kaushikaram Subramanian, Heike Petzold, Benjamin Seelbinder, Lena Hersemann, Ina Nüsslein, Moritz Kreysing\ Optical plasticity of mammalian cells\ Journal of Biophotonics 14(4) (Dec 21, 2020) \ DOI: 10.1002/jbio.202000457
Johanna Grinat, Julian Heuberger, Ramon Oliveira Vidal, Neha Goveas, Frauke Kosel, Antoni Berenguer-Llergo, Andrea Kranz, Annika Wulf-Goldenberg, Diana Behrens, Bálint Melcher, Sascha Sauer, Michael Vieth, Eduard Batlle, A. Francis Stewart, Walter Birchmeier\ The epigenetic regulator Mll1 is required for Wnt-driven intestinal tumorigenesis and cancer stemness\ Nat Commun 11(1), 6422 (Dec 21, 2020) \ DOI: 10.1038/s41467-020-20222-z
Elisa Maria Rieckhoff, Frederic Berndt, Maria Elsner, Stefan Golfier, Franziska Decker, Keisuke Ishihara, Jan Brugués\ Spindle Scaling Is Governed by Cell Boundary Regulation of Microtubule Nucleation\ Current Biology 30, 4973–4983 (Dec 21, 2020) \ DOI: 10.1016/j.cub.2020.10.093
Vasiliki Tsata, Volker Kroehne, Daniel Wehner, Fabian Rost, Christian Lange, Cornelia Hoppe, Thomas Kurth, Susanne Reinhardt, Andreas Petzold, Andreas Dahl, Markus Loeffler, Michell M. Reimer, Michael Brand\ Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord\ Development 147(24):dev193946 (Dec 16, 2020) \ DOI: 10.1242/dev.193946
Andreas Müller, Deborah Schmidt, C. Shan Xu, Song Pang, Joyson Verner D’Costa, Susanne Kretschmar, Carla Münster, Thomas Kurth, Florian Jug, Martin Weigert, Harald F. Hess, Michele Solimena\ 3D FIB-SEM reconstruction of microtubule–organelle interaction in whole primary mouse β cells\ Journal of Cell Biology 220(2) (Dec 16, 2020) \ DOI: 10.1083/jcb.202010039
Louise Jawerth, Elisabeth Fischer-Friedrich, Suropriya Saha, Jie Wang, Titus Franzmann, Xiaojie Zhang, Jenny Sachweh, Martine Ruer, Mahdiye Ijavi, Shambaditya Saha, Julia Mahamid, Anthony A. Hyman, Frank Jülicher\ Protein Condensates as Aging Maxwell Fluids\ Science 370(6522):1317–1323 (Dec 11, 2020) \ DOI: 10.1126/science.aaw4951
Yuta Suzuki, Eugene W. Myers, Shinichi Morishita\ Rapid and ongoing evolution of repetitive sequence structures in human centromeres\ Sci. Adv. 6(50) (Dec 11, 2020) \ DOI: 10.1126/sciadv.abd9230
Srija Bhagavatula, Elisabeth Knust\ A putative stem-loop structure in Drosophila crumbs is required for mRNA localisation in epithelia and germline cells\ Journal of Cell Science (Dec 11, 2020) \ DOI: 10.1242/jcs.236497
Tina Wiegand, Anthony A Hyman\ Drops and fibers - how biomolecular condensates and cytoskeletal filaments influence each other\ Emerg Top Life Sci (Dec 11, 2020) \ DOI: 10.1042/ETLS20190174
André Scholich, Simon Syga, Hernán Morales-Navarrete, Fabián Segovia-Miranda, Hidenori Nonaka, Kirstin Meyer, Walter de Back, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial, Frank Jülicher, Benjamin M. Friedrich\ Quantification of nematic cell polarity in three-dimensional tissues\ PLoS Comput Biol; 16(12): e1008412 (Dec 10, 2020) \ DOI: 10.1371/journal.pcbi.1008412
Nishant Kumar, Stefan Gumhold\ FuseVis: Interpreting Neural Networks for Image Fusion Using Per-Pixel Saliency Visualization\ Computers 9(4):98 (Dec 10, 2020) \ DOI: 10.3390/computers9040098
Sui L, Dahmann C\ Increased lateral tension is sufficient for epithelial folding in Drosophila\ Development, 147(23):dev194316. (Dec 4, 2020) \ DOI: 10.1242/dev.194316
Pierre Gillotay, Meghna Shankar, Benoit Haerlingen, Sema Elif Eski, Macarena Pozo-Morales, Inés Garteizgogeascoa, Susanne Reinhardt, Annekathrin Kränkel, Juliane Bläsche, Andreas Petzold, Nikolay Ninov, Gokul Kesavan, Christian Lange, Michael Brand, Anne Lefort, Frédérick Libert, Vincent Detours, Sabine Costagliola, Singh Sumeet Pal\ Single-cell transcriptome analysis reveals thyrocyte diversity in the zebrafish thyroid gland\ EMBO Rep 21(12):e50612 (Dec 3, 2020) \ DOI: 10.15252/embr.202050612
Vijay S. Adusumilli, Tara L. Walker, Rupert W. Overall, Gesa M. Klatt, Salma A. Zeidan, Sara Zocher, Dilyana G. Kirova, Konstantinos Ntitsias, Tim J. Fischer, Alex M. Sykes, Susanne Reinhardt, Andreas Dahl, Jörg Mansfeld, Annette E. Rünker, Gerd Kempermann\ ROS Dynamics Delineate Functional States of Hippocampal Neural Stem Cells and Link to Their Activity-Dependent Exit from Quiescence\ Cell Stem Cell 28(2):300–314.e6 (Dec 3, 2020) \ DOI: 10.1016/j.stem.2020.10.019
Lorella Marselli, Anthony Piron, Mara Suleiman, Maikel L. Colli, Xiaoyan Yi, Amna Khamis, Gaelle R. Carrat, Guy A. Rutter, Marco Bugliani, Laura Giusti, Maurizio Ronci, Mark Ibberson, Jean-Valery Turatsinze, Ugo Boggi, Paolo De Simone, Vincenzo De Tata, Miguel Lopes, Daniela Nasteska, Carmela De Luca, Marta Tesi, Emanuele Bosi, Pratibha Singh, Daniela Campani, Anke M. Schulte, Michele Solimena, Peter Hecht, Brian Rady, Ivona Bakaj, Alessandro Pocai, Lisa Norquay, Bernard Thorens, Mickaël Canouil, Philippe Froguel, Decio L. Eizirik, Miriam Cnop, Piero Marchetti\ Persistent or Transient Human β Cell Dysfunction Induced by Metabolic Stress: Specific Signatures and Shared Gene Expression with Type 2 Diabetes\ Cell Reports 33(9):108466 (Dec 1, 2020) \ DOI: 10.1016/j.celrep.2020.108466
Alexandre Guillet, Edgar Roldán, Frank Jülicher\ Extreme-value statistics of stochastic transport processes\ New J. Phys. 22(12):123038 (Dec 1, 2020) \ DOI: 10.1088/1367-2630/abcf69
Stephan Daetwyler, Carl D Modes, Reto Fiolka\ Fiji plugin for annotating movies with custom arrows\ Biol Open, 1;9(11):bio056200 (Dec 1, 2020) \ DOI: 10.1242/bio.056200
Kristian Le Vay, Ben M. Carter, Daniel W. Watkins, T.-Y. Dora Tang, Valeska P. Ting, Helmut Cölfen, Robert P. Rambo, Andrew J. Smith, J. L. Ross Anderson, Adam W. Perriman\ Controlling Protein Nanocage Assembly with Hydrostatic Pressure\ J. Am. Chem. Soc. 142(49):20640–20650 (Nov 30, 2020) \ DOI: 10.1021/jacs.0c07285
Alex H. M. Ng, Parastoo Khoshakhlagh, Jesus Eduardo Rojo Arias, Giovanni Pasquini, Kai Wang, Anka Swiersy, Seth L. Shipman, Evan Appleton, Kiavash Kiaee, Richie E. Kohman, Andyna Vernet, Matthew Dysart, Kathleen Leeper, Wren Saylor, Jeremy Y. Huang, Amanda Graveline, Jussi Taipale, David E. Hill, Marc Vidal, Juan M. Melero-Martin, Volker Busskamp, George M. Church\ A comprehensive library of human transcription factors for cell fate engineering\ Nat Biotechnol 39(4):510–519 (Nov 30, 2020) \ DOI: 10.1038/s41587-020-0742-6
Stefan Rothe, Qian Zhang, Nektarios Koukourakis, Jrgen Czarske\ Intensity-Only Mode Decomposition on Multimode Fibers Using a Densely Connected Convolutional Network\ J. Lightwave Technol. 39(6):1672–1679 (Nov 30, 2020) \ DOI: 10.1109/jlt.2020.3041374
Lydie Flasse, Coline Schewin, Anne Grapin-Botton\ Pancreas morphogenesis: Branching in and then out\ Current Topics in Developmental Biology 75–110 (Nov 27, 2020) \ DOI: 10.1016/bs.ctdb.2020.10.006
Jennifer J. Lühr, Nils Alex, Lukas Amon, Martin Kräter, Markéta Kubánková, Erdinc Sezgin, Christian H. K. Lehmann, Lukas Heger, Gordon F. Heidkamp, Ana-Sunčana Smith, Vasily Zaburdaev, Rainer A. Böckmann, Ilya Levental, Michael L. Dustin, Christian Eggeling, Jochen Guck, Diana Dudziak\ Maturation of Monocyte-Derived DCs Leads to Increased Cellular Stiffness, Higher Membrane Fluidity, and Changed Lipid Composition\ Front. Immunol. 11 (Nov 27, 2020) \ DOI: 10.3389/fimmu.2020.590121
Valentin Gensbittel, Martin Kräter, Sébastien Harlepp, Ignacio Busnelli, Jochen Guck, Jacky G. Goetz\ Mechanical Adaptability of Tumor Cells in Metastasis\ Developmental Cell 56(2):164–179 (Nov 24, 2020) \ DOI: 10.1016/j.devcel.2020.10.011
Johannes Gürtler, Felix Greiffenhagen, Jakob Woisetschläger, Robert Kuschmierz, Jürgen Czarske\ Seedingless measurement of density fluctuations and flow velocity using high-speed holographic interferometry in a swirl-stabilized flame\ Optics and Lasers in Engineering 139:106481 (Nov 24, 2020) \ DOI: 10.1016/j.optlaseng.2020.106481
Buket Ucar, Janko Kajtez, Bettina M. Foidl, Dimitri Eigel, Carsten Werner, Katherine R. Long, Jenny Emnéus, Joëlle Bizeau, Mihai Lomora, Abhay Pandit, Ben Newland, Christian Humpel\ Biomaterial based strategies to reconstruct the nigrostriatal pathway in organotypic slice co-cultures\ Acta Biomaterialia 121:250–262 (Nov 23, 2020) \ DOI: 10.1016/j.actbio.2020.11.035
Allison Lewis, Rashmiparvathi Keshara, Yung Hae Kim, Anne Grapin-Botton\ Self-organization of organoids from endoderm-derived cells\ J Mol Med 99(4):449–462 (Nov 22, 2020) \ DOI: 10.1007/s00109-020-02010-w
Ulrich Bonda, Anna Jaeschke, Anthony Lighterness, Jeremy Baldwin, Carsten Werner, Elena M. De-Juan-Pardo, Laura J. Bray\ 3D Quantification of Vascular-Like Structures in z Stack Confocal Images\ STAR Protocols 1(3):100180 (Nov 21, 2020) \ DOI: 10.1016/j.xpro.2020.100180
Gina A Monzon, Lara Scharrel, Ashwin DSouza, Verena Henrichs, Ludger Santen, Stefan Diez\ Stable tug-of-war between kinesin-1 and cytoplasmic dynein upon different ATP and roadblock concentrations\ J Cell Sci 133(22):jcs249938 (Nov 20, 2020) \ DOI: 10.1242/jcs.249938
Sadra Bakhshandeh, Hubert M. Taïeb, Raimund Schlüßler, Kyoohyun Kim, Timon Beck, Anna Taubenberger, Jochen Guck, Amaia Cipitria\ Optical quantification of intracellular mass density and cell mechanics in 3D mechanical confinement\ Soft Matter 17(4):853–862 (Nov 20, 2020) \ DOI: 10.1039/d0sm01556c
José M. Martín-Durán, Bruno C. Vellutini, Ferdinand Marlétaz, Viviana Cetrangolo, Nevena Cvetesic, Daniel Thiel, Simon Henriet, Xavier Grau-Bové, Allan M. Carrillo-Baltodano, Wenjia Gu, Alexandra Kerbl, Yamile Marquez, Nicolas Bekkouche, Daniel Chourrout, Jose Luis Gómez-Skarmeta, Manuel Irimia, Boris Lenhard, Katrine Worsaae, Andreas Hejnol\ Conservative route to genome compaction in a miniature annelid\ Nat Ecol Evol 5(2):231–242 (Nov 16, 2020) \ DOI: 10.1038/s41559-020-01327-6
Xiaozhu Zhang, Dirk Witthaut, Marc Timme\ Topological Determinants of Perturbation Spreading in Networks\ Phys. Rev. Lett. 125(21), 218301 (Nov 16, 2020) \ DOI: 10.1103/physrevlett.125.218301
Kritika Sharma, Tim U. Krohne, Volker Busskamp\ The Rise of Retinal Organoids for Vision Research\ IJMS 21(22):8484 (Nov 12, 2020) \ DOI: 10.3390/ijms21228484
Alexandra B. Schroeder, Ellen T. A. Dobson, Curtis T. Rueden, Pavel Tomancak, Florian Jug, Kevin W. Eliceiri\ The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis\ Protein Science 30(1):234–249 (Nov 9, 2020) \ DOI: 10.1002/pro.3993
Alexander Krause, Dirk Habich, Wolfgang Lehner\ Scalable In-Memory Graph Pattern Matching on Symmetric Multiprocessor Systems\ Communications in Computer and Information Science 49–62 (Nov 5, 2020) \ DOI: 10.1007/978-3-030-61133-0_4
Ana Carolina D. Noseda, Lais S. Rodrigues, Adriano D.S. Targa, Jessica L. Ilkiw, Juliane Fagotti, Patricia D. dos Santos, Erika Cecon, Regina P. Markus, Michele Solimena, Ralf Jockers, Marcelo M.S. Lima\ MT2 melatonin receptors expressed in the olfactory bulb modulate depressive-like behavior and olfaction in the 6-OHDA model of Parkinson's disease\ European Journal of Pharmacology 891:173722 (Nov 5, 2020) \ DOI: 10.1016/j.ejphar.2020.173722
Akanksha Jain, Vladimir Ulman, Arghyadip Mukherjee, Mangal Prakash, Marina B. Cuenca, Lokesh G. Pimpale, Stefan Münster, Robert Haase, Kristen A. Panfilio, Florian Jug, Stephan W. Grill, Pavel Tomancak, Anastasios Pavlopoulos\ Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation\ Nat Commun 11, 5604 (Nov 5, 2020) \ DOI: 10.1038/s41467-020-19356-x
- Pavel Tomancak
- Stephan W. Grill
- (Alumni Group) Robert Haase
David T. Gonzales, Christoph Zechner, T.-Y. Dora Tang\ Building synthetic multicellular systems using bottom–up approaches\ Current Opinion in Systems Biology (Nov 5, 2020) \ DOI: 10.1016/j.coisb.2020.10.005
Saminathan Ramakrishnan, Sivaraman Subramaniam, Charlotte Kielar, Guido Grundmeier, A. Francis Stewart, Adrian Keller\ Protein-Assisted Room-Temperature Assembly of Rigid, Immobile Holliday Junctions and Hierarchical DNA Nanostructures\ Molecules 25(21):5099 (Nov 4, 2020) \ DOI: 10.3390/molecules25215099
Shan Jiang, Johan Bourghardt Fagman, Changyan Chen, Simon Alberti, Beidong Liu\ Protein phase separation and its role in tumorigenesis\ eLife 9 (Nov 3, 2020) \ DOI: 10.7554/elife.60264
Elisa Nerli, Mauricio Rocha-Martins, Caren Norden\ Asymmetric neurogenic commitment of retinal progenitors involves Notch through the endocytic pathway\ Elife 9, e60462 (Nov 3, 2020) \ DOI: 10.7554/eLife.60462
Felix Kramer, Carl D. Modes\ How to pare a pair: Topology control and pruning in intertwined complex networks\ Phys. Rev. Research 2, 043171 (Nov 2, 2020) \ DOI: 10.1103/PhysRevResearch.2.043171
Marc Timme, Malte Schröder\ Disentangling scaling arguments to empower complex systems analysis\ Nature Physics volume 16, 1086–1088 (Nov 2, 2020) \ DOI: 10.1038/s41567-020-01063-5
Aryaman Gupta, Pietro Incardona, Ata Deniz Aydin, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini\ An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM\ ISAV’20 In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization Pages 20–26 (Nov 2020) \ DOI: 10.1145/3426462.3426472
Jing Wang, Christian Dahmann\ Establishing compartment boundaries in Drosophila wing imaginal discs: An interplay between selector genes, signaling pathways and cell mechanics\ Seminars in Cell and Developmental Biology 107, 161–169 (Nov 2020) \ DOI: 10.1016/j.semcdb.2020.07.008
Mads Borries, Younes Farhangi Barooji, Siham Yennek, Anne Grapin-Botton, Kirstine Berg-Sørensen, Lene B. Oddershede\ Quantification of Visco-Elastic Properties of a Matrigel for Organoid Development as a Function of Polymer Concentration\ Front. Phys. 8 (Oct 30, 2020) \ DOI: 10.3389/fphy.2020.579168
Andreas F. Kautt, Claudius F. Kratochwil, Alexander Nater, Gonzalo Machado-Schiaffino, Melisa Olave, Frederico Henning, Julián Torres-Dowdall, Andreas Härer, C. Darrin Hulsey, Paolo Franchini, Martin Pippel, Eugene W. Myers, Axel Meyer\ Contrasting signatures of genomic divergence during sympatric speciation\ Nature 588(7836):106–111 (Oct 28, 2020) \ DOI: 10.1038/s41586-020-2845-0
Omar Adame-Arana, Christoph A. Weber, Vasily Zaburdaev, Jacques Prost, Frank Jülicher\ Liquid Phase Separation Controlled by pH\ Biophys J. 119(8):1590–1605 (Oct 20, 2020) \ DOI: 10.1016/j.bpj.2020.07.044
Kyoohyun Kim, Jochen Guck\ The Relative Densities of Cytoplasm and Nuclear Compartments Are Robust against Strong Perturbation\ Biophysical Journal 119(10):1946–1957 (Oct 20, 2020) \ DOI: 10.1016/j.bpj.2020.08.044
Anna K. L. Liess, Alena Kucerova, Kristian Schweimer, Dörte Schlesinger, Olexandr Dybkov, Henning Urlaub, Jörg Mansfeld, Sonja Lorenz\ Dimerization regulates the human APC/C-associated ubiquitin-conjugating enzyme UBE2S\ Sci. Signal. 13(654) (Oct 20, 2020) \ DOI: 10.1126/scisignal.aba8208
Cristina Subiran Adrados, Qinghao Yu, Lizbeth Airais Bolaños Castro, Luis Alberto Rodriguez Cabrera, Maximina H Yun\ Salamander-Eci: An optical clearing protocol for the three-dimensional exploration of regeneration\ Dev Dyn 250(6):902-915 (Oct 20, 2020) \ DOI: 10.1002/dvdy.264
Michael Günther, Philipp Oehme, Maik Thiele, Wolfgang Lehner\ Learning from Textual Data in Database Systems\ Proceedings of the 29th ACM International Conference on Information & Knowledge Management (Oct 19, 2020) \ DOI: 10.1145/3340531.3412056
Sandeep Sreevalsan, Marietta Döring, Maciej Paszkowski‐Rogacz, Melanie Brux, Carolina Blanck, Marten Meyer, Frank Momburg, Frank Buchholz, Mirko Theis\ MLLT6 maintains PD‐L1 expression and mediates tumor immune resistance\ EMBO Reports 21(12) (Oct 16, 2020) \ DOI: 10.15252/embr.202050155
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- (Alumni Group) Robert Haase
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Ben Newland, Carmine Varricchio, Yvonne Körner, Franziska Hoppe, Christian Taplan, Heike Newland, Dimitri Eigel, Giusy Tornillo, Dagmar Pette, Andrea Brancale, Petra B. Welzel, F. Philipp Seib, Carsten Werner\ Focal drug administration via heparin-containing cryogel microcarriers reduces cancer growth and metastasis\ Carbohydrate Polymers 245:116504 (Jun 3, 2020) \ DOI: 10.1016/j.carbpol.2020.116504
Paul Müller, Gheorghe Cojoc, Jochen Guck\ DryMass: handling and analyzing quantitative phase microscopy images of spherical, cell-sized objects\ BMC Bioinformatics 21(1), 226 (Jun 3, 2020) \ DOI: 10.1186/s12859-020-03553-y
Xiaozhu Zhang, Cheng Ma, Marc Timme\ Vulnerability in dynamically driven oscillatory networks and power grids\ Chaos 30, 063111 (Jun 1, 2020) \ DOI: 10.1063/1.5122963
Guendalina Marini, Elisabeth Nüske, Weihua Leng, Simon Alberti, Gaia Pigino\ Reorganization of budding yeast cytoplasm upon energy depletion\ MBoC 31(12):1232–1245 (May 28, 2020) \ DOI: 10.1091/mbc.e20-02-0125
Thomas Beneyton, Celina Love, Mathias Girault, T.‐Y. Dora Tang, Jean‐Christophe Baret\ High‐Throughput Synthesis and Screening of Functional Coacervates Using Microfluidics\ ChemSystemsChem 2(6) (May 27, 2020) \ DOI: 10.1002/syst.202000022
Giuseppe Antonacci, Timon Beck, Alberto Bilenca, Jürgen Czarske, Kareem Elsayad, Jochen Guck, Kyoohyun Kim, Benedikt Krug, Francesca Palombo, Robert Prevedel, Giuliano Scarcelli\ Recent progress and current opinions in Brillouin microscopy for life science applications\ Biophys Rev (May 26, 2020) \ DOI: 10.1007/s12551-020-00701-9
Lydie Flasse, Siham Yennek, Cédric Cortijo, Irene Seijo Barandiaran, Marine R.-C. Kraus, Anne Grapin-Botton\ Apical Restriction of the Planar Cell Polarity Component VANGL in Pancreatic Ducts Is Required to Maintain Epithelial Integrity\ Cell Reports 31(8):107677 (May 26, 2020) \ DOI: 10.1016/j.celrep.2020.107677
Ahmad Ahsan Nawaz, Marta Urbanska, Maik Herbig, Martin Nötzel, Martin Kräter, Philipp Rosendahl, Christoph Herold, Nicole Toepfner, Markéta Kubánková, Ruchi Goswami, Shada Abuhattum, Felix Reichel, Paul Müller, Anna Taubenberger, Salvatore Girardo, Angela Jacobi, Jochen Guck\ Intelligent image-based deformation-assisted cell sorting with molecular specificity\ Nat Methods 17(6):595–599 (May 25, 2020) \ DOI: 10.1038/s41592-020-0831-y
Michael Günther, Paul Sikorski, Maik Thiele, Wolfgang Lehner\ FacetE\ Proceedings of the workshop on Testing Database Systems (May 25, 2020) \ DOI: 10.1145/3395032.3395325
Robin Rehrmann, Martin Keppner, Wolfgang Lehner, Carsten Binnig, Arne Schwarz\ Workload merging potential in SAP Hybris\ Proceedings of the workshop on Testing Database Systems (May 25, 2020) \ DOI: 10.1145/3395032.3395326
Aniruddha Mitra, Laura Meißner, Rojapriyadharshini Gandhimathi, Roman Renger, Felix Ruhnow, Stefan Diez\ Kinesin-14 motors drive a right-handed helical motion of antiparallel microtubules around each other\ Nat Commun 11, 2565 (May 22, 2020) \ DOI: 10.1038/s41467-020-16328-z
Deepthi Ashokkumar, Qinyu Zhang, Christian Much, Anita S. Bledau, Ronald Naumann, Dimitra Alexopoulou, Andreas Dahl, Neha Goveas, Jun Fu, Konstantinos Anastassiadis, A. Francis Stewart, Andrea Kranz\ MLL4 is required after implantation whereas MLL3 becomes essential during late gestation\ Development (May 21, 2020) \ DOI: 10.1242/dev.186999
Friedrich Striggow, Mariana Medina‐Sánchez, Günter K. Auernhammer, Veronika Magdanz, Benjamin M. Friedrich, Oliver G. Schmidt\ Sperm‐Driven Micromotors Moving in Oviduct Fluid and Viscoelastic Media\ Small 16(24) (May 20, 2020) \ DOI: 10.1002/smll.202000213
Jonathan Rodenfels, Pablo Sartori, Stefan Golfier, Kartikeya Nagendra, Karla M. Neugebauer, Jonathon Howard\ Contribution of increasing plasma membrane to the energetic cost of early zebrafish embryogenesis\ MBoC 31(7):520–526 (May 18, 2020) \ DOI: 10.1091/mbc.e19-09-0529
Gaelle R. Carrat, Elizabeth Haythorne, Alejandra Tomas, Leena Haataja, Andreas Müller, Peter Arvan, Alexandra Piunti, Kaiying Cheng, Mutian Huang, Timothy J. Pullen, Eleni Georgiadou, Theodoros Stylianides, Nur Shabrina Amirruddin, Victoria Salem, Walter Distaso, Andrew Cakebread, Kate J. Heesom, Philip A. Lewis, David J. Hodson, Linford J. Briant, Annie C.H. Fung, Richard B. Sessions, Fabien Alpy, Alice P.S. Kong, Peter I. Benke, Federico Torta, Adrian Kee Keong Teo, Isabelle Leclerc, Michele Solimena, Dale B. Wigley, Guy A. Rutter\ The type 2 diabetes gene product STARD10 is a phosphoinositide-binding protein that controls insulin secretory granule biogenesis\ Molecular Metabolism 40:101015 (May 13, 2020) \ DOI: 10.1016/j.molmet.2020.101015
Rana Faisal Munir, Alberto Abelló, Oscar Romero, Maik Thiele, Wolfgang Lehner\ Configuring Parallelism for Hybrid Layouts Using Multi-Objective Optimization\ Big Data 8(3):235–247 (May 13, 2020) \ DOI: 10.1089/big.2019.0068
Yanuar Dwi Putra Limasale, Passant Atallah, Carsten Werner, Uwe Freudenberg, Ralf Zimmermann\ Tuning the Local Availability of VEGF within Glycosaminoglycan‐Based Hydrogels to Modulate Vascular Endothelial Cell Morphogenesis\ Adv Funct Materials 30(44) (May 11, 2020) \ DOI: 10.1002/adfm.202000068
Duran Sürün, Aksana Schneider, Jovan Mircetic, Katrin Neumann, Felix Lansing, Maciej Paszkowski-Rogacz, Vanessa Hänchen, Min Ae Lee-Kirsch, Frank Buchholz\ Efficient Generation and Correction of Mutations in Human iPS Cells Utilizing mRNAs of CRISPR Base Editors and Prime Editors\ Genes 11(5):511 (May 7, 2020) \ DOI: 10.3390/genes11050511
Valentina Magno, Andrea Meinhardt, Carsten Werner\ Polymer Hydrogels to Guide Organotypic and Organoid Cultures\ Adv Funct Materials 30(48) (May 4, 2020) \ DOI: 10.1002/adfm.202000097
Christiane Iserman, Christine Desroches Altamirano, Ceciel Jegers, Ulrike Friedrich, Taraneh Zarin, Anatol W. Fritsch, Matthäus Mittasch, Antonio Domingues, Lena Hersemann, Marcus Jahnel, Doris Richter, Ulf-Peter Guenther, Matthias W. Hentze, Alan M. Moses, Anthony A. Hyman, Günter Kramer, Moritz Kreysing, Titus M. Franzmann, Simon Alberti\ Condensation of Ded1p Promotes a Translational Switch from Housekeeping to Stress Protein Production\ Cell 181(4):818–831.e19 (Apr 30, 2020) \ DOI: 10.1016/j.cell.2020.04.009
- Marcus Jahnel
- Simon Alberti
- Anthony A. Hyman
- (Alumni Group) Moritz Kreysing
Ekta Kumari, Stefan Görlich, Nicole Poulsen, Nils Kröger\ Genetically Programmed Regioselective Immobilization of Enzymes in Biosilica Microparticles\ Adv Funct Materials 30(25) (Apr 27, 2020) \ DOI: 10.1002/adfm.202000442
Marta Urbanska, Hector E. Muñoz, Josephine Shaw Bagnall, Oliver Otto, Scott R. Manalis, Dino Di Carlo, Jochen Guck\ A comparison of microfluidic methods for high-throughput cell deformability measurements\ Nat Methods 17(6):587–593 (Apr 27, 2020) \ DOI: 10.1038/s41592-020-0818-8
Tino Wollmann, Edmund Koch, Julian Lich, Max Vater, Robert Kuschmierz, Christian Schnabel, Jürgen Czarske, Angelos Filippatos, Maik Gude\ Motion blur suppression by using an optical derotator for deformation measurement of rotating components\ Nondestructive Characterization and Monitoring of Advanced Materials, Aerospace, Civil Infrastructure, and Transportation IX (Apr 22, 2020) \ DOI: 10.1117/12.2556153
Julian Lich, Tino Wollmann, Hao Zhang, Angelos Filippatos, Robert Kuschmierz, Maik Gude, Jürgen Czarske\ Diffraction grating based measurement of the modal behavior of fast rotating composite discs (Conference Presentation)\ Nondestructive Characterization and Monitoring of Advanced Materials, Aerospace, Civil Infrastructure, and Transportation IX (Apr 22, 2020) \ DOI: 10.1117/12.2557732
Marcel Mokbel, Kamran Hosseini, Sebastian Aland, Elisabeth Fischer-Friedrich\ The Poisson Ratio of the Cellular Actin Cortex Is Frequency Dependent\ Biophys J. 118(8):1968–1976. (Apr 21, 2020) \ DOI: 10.1016/j.bpj.2020.03.002
Steffen Vogler, Silvana Prokoph, Uwe Freudenberg, Marcus Binner, Mikhail Tsurkan, Carsten Werner, Gerd Kempermann\ Author Correction: Defined Geldrop Cultures Maintain Neural Precursor Cells\ Sci Rep 10(1), 6856 (Apr 16, 2020) \ DOI: 10.1038/s41598-020-63854-3
Florian Lemke, Pascal M Weber, Katrin Philipp, Jürgen W Czarske, Nektarios Koukourakis, Ulrike Wallrabe, Matthias C Wapler\ Piezo-actuated adaptive prisms for continuously adjustable bi-axial scanning\ Smart Mater. Struct. 29(9):095004 (Apr 16, 2020) \ DOI: 10.1088/1361-665x/ab8a00
Jordina Guillén-Boixet, Andrii Kopach, Alex S. Holehouse, Sina Wittmann, Marcus Jahnel, Raimund Schlüßler, Kyoohyun Kim, Irmela R.E.A. Trussina, Jie Wang, Daniel Mateju, Ina Poser, Shovamayee Maharana, Martine Ruer-Gruß, Doris Richter, Xiaojie Zhang, Young-Tae Chang, Jochen Guck, Alf Honigmann, Julia Mahamid, Anthony A. Hyman, Rohit V. Pappu, Simon Alberti, Titus M. Franzmann\ RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation\ Cell 181, 346–361 (Apr 16, 2020) \ DOI: 10.1016/j.cell.2020.03.049
Michael Nestler, Ingo Nitschke, Hartmut Löwen, Axel Voigt\ Properties of surface Landau–de GennesQ-tensor models\ Soft Matter 16(16):4032–4042 (Apr 9, 2020) \ DOI: 10.1039/c9sm02475a
Holger Merlitz, Hidde D. Vuijk, René Wittmann, Abhinav Sharma, Jens-Uwe Sommer\ Pseudo-chemotaxis of active Brownian particles competing for food\ PLoS ONE 15(4):e0230873 (Apr 8, 2020) \ DOI: 10.1371/journal.pone.0230873
Christian M. Cohrs, Julia K. Panzer, Denise M. Drotar, Stephen J. Enos, Nicole Kipke, Chunguang Chen, Robert Bozsak, Eyke Schöniger, Florian Ehehalt, Marius Distler, Ana Brennand, Stefan R. Bornstein, Jürgen Weitz, Michele Solimena, Stephan Speier\ Dysfunction of Persisting β Cells Is a Key Feature of Early Type 2 Diabetes Pathogenesis\ Cell Reports 31(1):107469 (Apr 7, 2020) \ DOI: 10.1016/j.celrep.2020.03.033
Stefan Schmidt, Annett Linge, Marianne Grosser, Fabian Lohaus, Volker Gudziol, Alexander Nowak, Ingeborg Tinhofer, Volker Budach, Ali Sak, Martin Stuschke, Panagiotis Balermpas, Claus Rödel, Henning Schäfer, Anca-Ligia Grosu, Amir Abdollahi, Jürgen Debus, Ute Ganswindt, Claus Belka, Steffi Pigorsch, Stephanie E. Combs, David Mönnich, Daniel Zips, Gustavo B. Baretton, Frank Buchholz, Michael Baumann, Mechthild Krause, Steffen Löck\ Comparison of GeneChip, nCounter, and Real-Time PCR–Based Gene Expressions Predicting Locoregional Tumor Control after Primary and Postoperative Radiochemotherapy in Head and Neck Squamous Cell Carcinoma\ The Journal of Molecular Diagnostics 22(6):801–810 (Apr 2, 2020) \ DOI: 10.1016/j.jmoldx.2020.03.005
Wolfgang Büschel, Georg Eckert, Raimund Dachselt\ Challenges in Collaborative Immersive Visualization\ CHI 2020 Workshop on Immersive Analytics: Envisioning Future Productivity for Immersive Analytics (Apr 2020)
Patrick Reipschläger, Severin Engert, Raimund Dachselt\ Augmented Displays: Seamlessly Extending Interactive Surfaces With Head-Mounted Augmented Reality\ In Extended Abstracts of the 2020 CHI Conference on Human Factors in Computing Systems (CHI EA ’20). Association for Computing Machinery, New York, NY, USA, 1–4. (Apr 2020) \ DOI: 10.1145/3334480.3383138
Elias Scharf, Robert Kuschmierz, Jürgen W. Czarske\ Needle-size lensless fiber endoscope for optical stretching and 3D imaging with cellular resolution (Conference Presentation)\ Biomedical Spectroscopy, Microscopy, and Imaging (Apr 1, 2020) \ DOI: 10.1117/12.2553679
Sebastian Junge, Felix Schmieder, Philipp Sasse, Jürgen W. Czarske, Maria Leilani Torres-Mapa, Alexander Heisterkamp\ Holographic optogenetic stimulation with calcium imaging as an all-optical tool for cardiac electrophysiological studies (Conference Presentation)\ Biomedical Spectroscopy, Microscopy, and Imaging (Apr 1, 2020) \ DOI: 10.1117/12.2554011
Benedikt Krug, Nektarios Koukourakis, Jürgen W. Czarske\ Fast measurement of mechanical properties with impulsive stimulated Brillouin microscopy (Conference Presentation)\ Biomedical Spectroscopy, Microscopy, and Imaging (Apr 1, 2020) \ DOI: 10.1117/12.2555358
Gunar Fabig, Robert Kiewisz, Norbert Lindow, James A Powers, Vanessa Cota, Luis J Quintanilla, Jan Brugués, Steffen Prohaska, Diana S Chu, Thomas Müller-Reichert\ Male meiotic spindle features that efficiently segregate paired and lagging chromosomes\ eLife 9:e50988. (Apr 1, 2020) \ DOI: 10.7554/eLife.50988
Wenjie Wang, Nektarios Koukourakis, Jürgen W. Czarske\ Piezo-actuated adaptive elements in scanning microscopy (Conference Presentation)\ Unconventional Optical Imaging II (Mar 30, 2020) \ DOI: 10.1117/12.2555383
Theresa Suckert, Johannes Müller, Elke Beyreuther, Behnam Azadegan, Anja Brüggemann, Rebecca Bütof, Antje Dietrich, Malte Gotz, Robert Haase, Michael Schürer, Falk Tillner, Cläre von Neubeck, Mechthild Krause, Armin Lühr\ High-precision image-guided proton irradiation of mouse brain sub-volumes\ Radiotherapy and Oncology 146:205–212 (Mar 26, 2020) \ DOI: 10.1016/j.radonc.2020.02.023
- (Alumni Group) Robert Haase
Milena Schuhmacher, Andreas T. Grasskamp, Pavel Barahtjan, Nicolai Wagner, Benoit Lombardot, Jan S. Schuhmacher, Pia Sala, Annett Lohmann, Ian Henry, Andrej Shevchenko, Ünal Coskun, Alexander M. Walter, André Nadler\ Live-cell lipid biochemistry reveals a role of diacylglycerol side-chain composition for cellular lipid dynamics and protein affinities\ Proc. Natl. Acad. Sci. U.S.A. 117(14):7729–7738 (Mar 26, 2020) \ DOI: 10.1073/pnas.1912684117
Rita Mateus, Laurent Holtzer, Carole Seum, Zena Hadjivasiliou, Marine Dubois, Frank Jülicher, Marcos Gonzalez-Gaitan\ BMP Signaling Gradient Scaling in the Zebrafish Pectoral Fin\ Cell Reports, 30(12):4292-4302.e7 (Mar 24, 2020) \ DOI: 10.1016/j.celrep.2020.03.0240
Ruslan Rust, Tunahan Kirabali, Lisa Grönnert, Berre Dogancay, Yanuar D. P. Limasale, Andrea Meinhardt, Carsten Werner, Bàrbara Laviña, Luka Kulic, Roger M. Nitsch, Christian Tackenberg, Martin E. Schwab\ A Practical Guide to the Automated Analysis of Vascular Growth, Maturation and Injury in the Brain\ Front. Neurosci. 14 (Mar 20, 2020) \ DOI: 10.3389/fnins.2020.00244
Sider Penkov, Bharath Kumar Raghuraman, Cihan Erkut, Jana Oertel, Roberta Galli, Eduardo Jacobo Miranda Ackerman, Daniela Vorkel, Jean-Marc Verbavatz, Edmund Koch, Karim Fahmy, Andrej Shevchenko, Teymuras V. Kurzchalia\ A metabolic switch regulates the transition between growth and diapause in C. elegans\ BMC Biol 18(1), 31 (Mar 18, 2020) \ DOI: 10.1186/s12915-020-0760-3
Justus A. Kromer, Noelia de la Cruz, Benjamin M. Friedrich\ Chemokinetic Scattering, Trapping, and Avoidance of Active Brownian Particles\ Phys. Rev. Lett. 124, 118101 (Mar 17, 2020) \ DOI: 10.1103/PhysRevLett.124.118101
Hannes Radner, Johannes Stange, Lars Buttner, Jurgen Czarske\ Field-Programmable System-on-Chip-Based Control System for Real-Time Distortion Correction in Optical Imaging\ IEEE Trans. Ind. Electron. 68(4):3370–3379 (Mar 17, 2020) \ DOI: 10.1109/tie.2020.2979557
David T. Gonzales, T-Y Dora Tang, Christoph Zechner\ Moment-based analysis of biochemical networks in a heterogeneous population of communicating cells\ 2019 IEEE 58th Conference on Decision and Control (CDC) (Mar 13, 2020) \ DOI: 10.1109/cdc40024.2019.9029457
Liyuan Sui and Christian Dahmann\ Wingless counteracts epithelial folding by increasing mechanical tension at basal cell edges in Drosophila\ Development 147(5) dev184713. (Mar 11, 2020) \ DOI: 10.1242/dev.184713
Marcus Michel and Christian Dahmann\ Tissue mechanical properties modulate cell extrusion in the Drosophila abdominal epidermis\ Development 147(5) dev179606. (Mar 11, 2020) \ DOI: 10.1242/dev.179606
Elias Scharf, Robert Kuschmierz, Jürgen Czarske\ Robust 4D wavefront control through coherent fiber bundles for lensless endoscopy and optical tweezing (Conference Presentation)\ Adaptive Optics and Wavefront Control for Biological Systems VI (Mar 11, 2020) \ DOI: 10.1117/12.2543213
Andrea Bertoncini, Gheorghe Cojoc, Jochen Guck, Carlo Liberale\ High-throughput fabrication of right-angle prism mirrors with selective metalization by two-step 3D printing and computer vision alignment\ Advanced Fabrication Technologies for Micro/Nano Optics and Photonics XIII (Feb 28, 2020) \ DOI: 10.1117/12.2544147
Nora Molkenthin, Steffen Mühle, Antonia S. J. S. Mey, Marc Timme\ Self-organized emergence of folded protein-like network structures from geometric constraints\ PLoS ONE 15(2): e0229230 (Feb 27, 2020) \ DOI: 10.1371/journal.pone.0229230
Ritika Giri, Dimitrios K Papadopoulos, Diana M Posadas, Hemanth K Potluri, Pavel Tomancak, Madhav Mani, Richard W Carthew\ Ordered patterning of the sensory system is susceptible to stochastic features of gene expression\ eLife 9 (Feb 26, 2020) \ DOI: 10.7554/elife.53638
Haifeng Xu, Mariana Medina-Sánchez, Manfred F. Maitz, Carsten Werner, Oliver G. Schmidt\ Sperm Micromotors for Cargo Delivery through Flowing Blood\ ACS Nano 14(3):2982–2993 (Feb 25, 2020) \ DOI: 10.1021/acsnano.9b07851
Johannes Luong, Dirk Habich, Wolfgang Lehner\ A Technical Perspective of DataCalc — Ad-hoc Analyses on Heterogeneous Data Sources\ 2019 IEEE International Conference on Big Data (Big Data) (Feb 25, 2020) \ DOI: 10.1109/bigdata47090.2019.9006029
Maik Herbig, Ahmad Ahsan Nawaz, Marta Urbanska, Martin Nötzel, Martin Kräter, Philipp Rosendahl, Christoph Herold, Nicole Töpfner, Marketa Kubankova, Ruchi Goswami, Shada Abuhattum, Felix Reichel, Paul Müller, Anna Taubenberger, Salvatore Girardo, Angela Jacobi, Jochen R. Guck\ Image-based cell sorting using artificial intelligence\ High-Speed Biomedical Imaging and Spectroscopy V (Feb 20, 2020) \ DOI: 10.1117/12.2544809
Alexander Krull, Tomáš Vičar, Mangal Prakash, Manan Lalit, Florian Jug\ Probabilistic Noise2Void: Unsupervised Content-Aware Denoising\ Front. Comput. Sci. 2 (Feb 19, 2020) \ DOI: 10.3389/fcomp.2020.00005
Giovanni Pasquini, Virginia Cora, Anka Swiersy, Kevin Achberger, Lena Antkowiak, Brigitte Müller, Tobias Wimmer, Sabine Anne-Kristin Fraschka, Nicolas Casadei, Marius Ueffing, Stefan Liebau, Knut Stieger, Volker Busskamp\ Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing\ IJMS 21(4):1380 (Feb 19, 2020) \ DOI: 10.3390/ijms21041380
Stefan Rothe, Qian Zhang, Nektarios Koukourakis, Jürgen W. Czarske\ Deep Learning for Computational Mode Decomposition in Optical Fibers\ Applied Sciences 10(4):1367 (Feb 18, 2020) \ DOI: 10.3390/app10041367
Georg Krainer, Mathias Schenkel, Andreas Hartmann, Dorna Ravamehr-Lake, Charles M. Deber, Michael Schlierf\ CFTR transmembrane segments are impaired in their conformational adaptability by a pathogenic loop mutation and dynamically stabilized by Lumacaftor\ J. Biol. Chem. 295:1985–1991 (Feb 14, 2020) \ DOI: 10.1074/jbc.AC119.011360
Sebastian Kühn, Jana Sievers, Aukha Stoppa, Nicole Träber, Ralf Zimmermann, Petra B. Welzel, Carsten Werner\ Cell-Instructive Multiphasic Gel-in-Gel Materials\ Advanced Functional Materials (Feb 14, 2020) \ DOI: 10.1002/adfm.201908857
Matthäus Mittasch, Vanna M. Tran, Manolo U. Rios, Anatol W. Fritsch, Stephen J. Enos, Beatriz Ferreira Gomes, Alec Bond, Moritz Kreysing, Jeffrey B. Woodruff\ Regulated changes in material properties underlie centrosome disassembly during mitotic exit\ Journal of Cell Biology 219(4) (Feb 12, 2020) \ DOI: 10.1083/jcb.201912036
Lars Büttner, Martin Thümmler, Jürgen Czarske\ Velocity measurements with structured light transmitted through a multimode optical fiber using digital optical phase conjugation\ Opt. Express 28(6):8064 (Feb 11, 2020) \ DOI: 10.1364/oe.386047
Sona Valuchova, Pavlina Mikulkova, Jana Pecinkova, Jana Klimova, Michal Krumnikl, Petr Bainar, Stefan Heckmann, Pavel Tomancak, Karel Riha\ Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy\ eLife 9 (Feb 11, 2020) \ DOI: 10.7554/elife.52546
Adeeba Fathima Valiya Thodiyil, André Ohara, Nicole Poulsen, Nils Kröger, Michael Schlierf\ Using Correlative Superresolution Fluorescence and Electron Microscopy to Unravel Diatom Morphogenesis\ Biophysical Journal 118(3):148a–149a (Feb 7, 2020) \ DOI: 10.1016/j.bpj.2019.11.932
Rouhollah Habibey, Kritika Sharma, Anka Swiersy, Volker Busskamp\ Optogenetics for neural transplant manipulation and functional analysis\ Biochemical and Biophysical Research Communications 527(2):343–349 (Feb 6, 2020) \ DOI: 10.1016/j.bbrc.2020.01.141
Helen K. Matthews, Sushila Ganguli, Katarzyna Plak, Anna V. Taubenberger, Zaw Win, Max Williamson, Matthieu Piel, Jochen Guck, Buzz Baum\ Oncogenic Signaling Alters Cell Shape and Mechanics to Facilitate Cell Division under Confinement\ Developmental Cell 52(5):563–573.e3 (Feb 6, 2020) \ DOI: 10.1016/j.devcel.2020.01.004
Elvis Koci, Maik Thiele, Oscar Romero, Wolfgang Lehner\ A Genetic-Based Search for Adaptive Table Recognition in Spreadsheets\ 2019 International Conference on Document Analysis and Recognition (ICDAR) (Feb 4, 2020) \ DOI: 10.1109/icdar.2019.00206
Elvis Koci, Maik Thiele, Josephine Rehak, Oscar Romero, Wolfgang Lehner\ DECO: A Dataset of Annotated Spreadsheets for Layout and Table Recognition\ 2019 International Conference on Document Analysis and Recognition (ICDAR) (Feb 4, 2020) \ DOI: 10.1109/icdar.2019.00207
Satu Kujawski, Cátia Crespo, Marta Luz, Michaela Yuan, Sylke Winkler, Elisabeth Knust\ Loss of Crb2b-lf leads to anterior segment defects in old zebrafish\ Biology Open (Jan 27, 2020) \ DOI: 10.1242/bio.047555
Adam Klosin, Florian Oltsch, Tyler Harmon, Alf Honigmann, Frank Jülicher, Anthony Hyman, Christoph Zechner\ Phase separation provides a mechanism to reduce noise in cells\ Science 367(6476):464–468. (Jan 24, 2020) \ DOI: 10.1126/science.aav6691
Ben Newland, Fanny Ehret, Franziska Hoppe, Dimitri Eigel, Dagmar Pette, Heike Newland, Petra B. Welzel, Gerd Kempermann, Carsten Werner\ Static and dynamic 3D culture of neural precursor cells on macroporous cryogel microcarriers\ MethodsX 7:100805 (Jan 24, 2020) \ DOI: 10.1016/j.mex.2020.100805
Hao Zhang, Damian Anders, Michael Löser, Steffen Ihlenfeldt, Jürgen Czarske, Robert Kuschmierz\ Non-contact, bi-directional tool tip vibration measurement in CNC milling machines with a single optical sensor\ Mechanical Systems and Signal Processing 139:106647 (Jan 24, 2020) \ DOI: 10.1016/j.ymssp.2020.106647
Shengyu Shi, Robert Kuschmierz, Guizhen Zhang, Jing Lin, Jürgen Czarske, Jinping Qu\ Modeling, quantification, and mitigation of uncertainty propagation in two-step roundness measurements\ Measurement 155:107530 (Jan 23, 2020) \ DOI: 10.1016/j.measurement.2020.107530
Martin Pippel, David Jebb, Franziska Patzold, Sylke Winkler, Heiko Vogel, Gene Myers, Michael Hiller, Anna K Hundsdoerfer\ A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae)\ GigaScience 9(1) (Jan 23, 2020) \ DOI: 10.1093/gigascience/giaa001
Stephanie Möllmert, Maria A. Kharlamova, Tobias Hoche, Anna V. Taubenberger, Shada Abuhattum, Veronika Kuscha, Thomas Kurth, Michael Brand, Jochen Guck\ Zebrafish Spinal Cord Repair Is Accompanied by Transient Tissue Stiffening\ Biophysical Journal (Jan 21, 2020) \ DOI: 10.1016/j.bpj.2019.10.044
Celina Love, Jan Steinkühler, David T. Gonzales, Naresh Yandrapalli, Tom Robinson, Rumiana Dimova, T.‐Y. Dora Tang\ Reversible pH‐Responsive Coacervate Formation in Lipid Vesicles Activates Dormant Enzymatic Reactions\ Angew Chem Int Ed 59(15):5950–5957 (Jan 14, 2020) \ DOI: 10.1002/anie.201914893
Alexander Krull, Tim-Oliver Buchholz, Florian Jug\ Noise2Void - Learning Denoising From Single Noisy Images\ 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) (Jan 10, 2020) \ DOI: 10.1109/cvpr.2019.00223
Kathleen R Bashant, Nicole Toepfner, Christopher J Day, Nehal N Mehta, Mariana J Kaplan, Charlotte Summers, Jochen Guck, Edwin R Chilvers\ The mechanics of myeloid cells\ Biology of the Cell 112(4):103–112 (Jan 9, 2020) \ DOI: 10.1111/boc.201900084
Christian Lange, Fabian Rost, Anja Machate, Susanne Reinhardt, Matthias Lesche, Anke Weber, Veronika Kuscha, Andreas Dahl, Steffen Rulands, Michael Brand\ Single cell sequencing of radial glia progeny reveals the diversity of newborn neurons in the adult zebrafish brain\ Development, 147 (1): dev185595 (Jan 9, 2020) \ DOI: 10.1242/dev.185595
Samuel J. Bose, Georg Krainer, Demi R.S. Ng, Mathias Schenkel, Hideki Shishido, Jae Seok Yoon, Peter M. Haggie, Michael Schlierf, David N. Sheppard, William R. Skach\ Towards next generation therapies for cystic fibrosis: Folding, function and pharmacology of CFTR\ Journal of Cystic Fibrosis 19:S25–S32 (Jan 3, 2020) \ DOI: 10.1016/j.jcf.2019.12.009
Hiroki R. Ueda, Ali Ertürk, Kwanghun Chung, Viviana Gradinaru, Alain Chédotal, Pavel Tomancak, Philipp J. Keller\ Tissue clearing and its applications in neuroscience\ Nat Rev Neurosci 21(2):61–79 (Jan 2, 2020) \ DOI: 10.1038/s41583-019-0250-1
Wenjie Wang, Katrin Philipp, Nektarios Koukourakis, Jürgen W. Czarske\ Real-time monitoring of adaptive lenses with high tuning range and multiple degrees of freedom\ Opt. Lett. 45(2):272 (Jan 2, 2020) \ DOI: 10.1364/ol.45.000272
2019
223 publication(s) listed
A. Gong, S. Rode, U. B. Kaupp, G. Gompper, J. Elgeti, B. M. Friedrich, L. Alvarez\ The steering gaits of sperm\ Phil. Trans. R. Soc. B 375(1792):20190149 (Dec 30, 2019) \ DOI: 10.1098/rstb.2019.0149
Richard Nauber, Lars Buttner, Jurgen Czarske\ Ultrasound Imaging in Hot Melts with Time Reversal Virtual Arrays\ 2019 IEEE International Ultrasonics Symposium (IUS) (Dec 27, 2019) \ DOI: 10.1109/ultsym.2019.8926053
Takashi Namba, Judit Dóczi, Anneline Pinson, Lei Xing, Nereo Kalebic, Michaela Wilsch-Bräuninger, Katherine R. Long, Samir Vaid, Janelle Lauer, Aliona Bogdanova, Barbara Borgonovo, Anna Shevchenko, Patrick Keller, David Drechsel, Teymuras Kurzchalia, Pauline Wimberger, Christos Chinopoulos, Wieland B. Huttner\ Human-Specific ARHGAP11B Acts in Mitochondria to Expand Neocortical Progenitors by Glutaminolysis\ Neuron 105(5):867–881.e9 (Dec 26, 2019) \ DOI: 10.1016/j.neuron.2019.11.027
Ben Newland, Fanny Ehret, Franziska Hoppe, Dimitri Eigel, Dagmar Pette, Heike Newland, Petra B. Welzel, Gerd Kempermann, Carsten Werner\ Macroporous heparin-based microcarriers allow long-term 3D culture and differentiation of neural precursor cells\ Biomaterials 230, 119540 (Dec 20, 2019) \ DOI: 10.1016/j.biomaterials.2019.119540
Paulo Caldas, Mar López-Pelegrín, Daniel J. G. Pearce, Nazmi Burak Budanur, Jan Brugués, Martin Loose\ Cooperative ordering of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinker ZapA\ Nat Commun 10, 5744 (Dec 17, 2019) \ DOI: 10.1038/s41467-019-13702-4
Felix Greiffenhagen, Jakob Woisetschläger, Johannes Gürtler, Jürgen Czarske\ Quantitative measurement of density fluctuations with a full-field laser interferometric vibrometer\ Exp Fluids 61(1), 9 (Dec 16, 2019) \ DOI: 10.1007/s00348-019-2842-y
Rachel S. Kraut, Elisabeth Knust\ Changes in endolysosomal organization define a pre-degenerative state in the crumbs mutant Drosophila retina\ PLoS ONE 14(12):e0220220 (Dec 13, 2019) \ DOI: 10.1371/journal.pone.0220220
Kaushikaram Subramanian, Martin Weigert, Oliver Borsch, Heike Petzold, Alfonso Garcia-Ulloa, Eugene W Myers, Marius Ader, Irina Solovei, Moritz Kreysing\ Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice\ eLife 2019;8:e49542 (Dec 11, 2019) \ DOI: 10.7554/eLife.49542
Florian Bürkle, Florine Moyon, Lukas Feierabend, Jens Wartmann, Angelika Heinzel, Jürgen Czarske, Lars Büttner\ Investigation and equalisation of the flow distribution in a fuel cell stack\ Journal of Power Sources 448:227546 (Dec 10, 2019) \ DOI: 10.1016/j.jpowsour.2019.227546
Yachong Guo, Marco Werner, Wenfei Li, Jens-Uwe Sommer, Vladimir A. Baulin\ Shape-Adaptive Single-Chain Nanoparticles Interacting with Lipid Membranes\ Macromolecules 52(24):9578–9584 (Dec 10, 2019) \ DOI: 10.1021/acs.macromol.9b02102
Sarita Hebbar, Elisabeth Knust, Guillaume Thibault, Rachel Susan Kraut\ Editorial: Connections to Membrane Trafficking Where You Least Expect Them: Diseases, Dynamics, Diet and Distance\ Front. Cell Dev. Biol. 7 (Dec 6, 2019) \ DOI: 10.3389/fcell.2019.00327
Daniela Mayer, Michael B Stadler, Melanie Rittirsch, Daniel Hess, Ilya Lukonin, Maria Winzi, Austin Smith, Frank Buchholz, Joerg Betschinger\ Zfp281 orchestrates interconversion of pluripotent states by engaging Ehmt1 and Zic2\ The EMBO Journal 39(2) (Nov 29, 2019) \ DOI: 10.15252/embj.2019102591
Hassan Mziaut, Georg Henniger, Katharina Ganss, Sebastian Hempel, Steffen Wolk, Johanna McChord, Kamal Chowdhury, Philippe Ravassard, Klaus-Peter Knoch, Christian Krautz, Jürgen Weitz, Robert Grützmann, Christian Pilarsky, Michele Solimena, Stephan Kersting\ MiR-132 controls pancreatic beta cell proliferation and survival through Pten/Akt/Foxo3 signaling\ Molecular Metabolism 31:150–162 (Nov 22, 2019) \ DOI: 10.1016/j.molmet.2019.11.012
Rebecca Bütof, Steffen Löck, Maher Soliman, Robert Haase, Rosalind Perrin, Christian Richter, Steffen Appold, Mechthild Krause, Michael Baumann\ Dose–volume predictors of early esophageal toxicity in non-small cell lung cancer patients treated with accelerated-hyperfractionated radiotherapy\ Radiotherapy and Oncology 143:44–50 (Nov 22, 2019) \ DOI: 10.1016/j.radonc.2019.11.002
- (Alumni Group) Robert Haase
Antoine Graindorge, Inês Pinheiro, Anna Nawrocka, Allison C. Mallory, Peter Tsvetkov, Noa Gil, Carlo Carolis, Frank Buchholz, Igor Ulitsky, Edith Heard, Mikko Taipale, Alena Shkumatava\ In-cell identification and measurement of RNA-protein interactions\ Nat Commun 10(1), 5317 (Nov 22, 2019) \ DOI: 10.1038/s41467-019-13235-w
Muhammad Idris, Martín Ugarte, Stijn Vansummeren, Hannes Voigt, Wolfgang Lehner\ General dynamic Yannakakis: conjunctive queries with theta joins under updates\ The VLDB Journal 29(2-3):619–653 (Nov 19, 2019) \ DOI: 10.1007/s00778-019-00590-9
N. Träber, K. Uhlmann, S. Girardo, G. Kesavan, K. Wagner, J. Friedrichs, R. Goswami, K. Bai, M. Brand, C. Werner, D. Balzani, J. Guck\ Polyacrylamide Bead Sensors for in vivo Quantification of Cell-Scale Stress in Zebrafish Development\ Sci Rep 9, 17031 (2019). (Nov 19, 2019) \ DOI: 10.1038/s41598-019-53425-6
Cyril Basquin, Dmitry Ershov, Noémie Gaudin, Hanh Thi-Kim Vu, Bruno Louis, Jean-François Papon, Anne-Marie Orfila, Sarah Mansour, Jochen Christian Rink, Juliette Azimzadeh\ Emergence of a Bilaterally Symmetric Pattern from Chiral Components in the Planarian Epidermis\ Developmental Cell 51(4):516–525.e5 (Nov 18, 2019) \ DOI: 10.1016/j.devcel.2019.10.021
Hanh Thi-Kim Vu, Sarah Mansour, Michael Kücken, Corinna Blasse, Cyril Basquin, Juliette Azimzadeh, Eugene Wimberly Myers, Lutz Brusch, Jochen Christian Rink\ Dynamic Polarization of the Multiciliated Planarian Epidermis between Body Plan Landmarks\ Developmental Cell 51(4):526–542.e6 (Nov 18, 2019) \ DOI: 10.1016/j.devcel.2019.10.022
Robert Haase, Loic A. Royer, Peter Steinbach, Deborah Schmidt, Alexandr Dibrov, Uwe Schmidt, Martin Weigert, Nicola Maghelli, Pavel Tomancak, Florian Jug, Eugene W. Myers\ CLIJ: GPU-accelerated image processing for everyone\ Nat Methods 17(1):5–6 (Nov 18, 2019) \ DOI: 10.1038/s41592-019-0650-1
- Eugene W. Myers
- Pavel Tomancak
- (Alumni Group) Robert Haase
- (Alumni Group) Florian Jug
Hauke Drechsler, Yong Xu, Veikko F. Geyer, Yixin Zhang, Stefan Diez\ Multivalent electrostatic microtubule-interactions of synthetic peptides are sufficient to mimic advanced MAP-like behaviour\ Mol Biol Cell 30(24), 2953–2968 (Nov 14, 2019) \ DOI: 10.1091/mbc.E19-05-0247
Ritsuya Niwayama, Prachiti Moghe, Yan-Jun Liu, Dimitri Fabrèges, Frank Buchholz, Matthieu Piel, Takashi Hiiragi\ A Tug-of-War between Cell Shape and Polarity Controls Division Orientation to Ensure Robust Patterning in the Mouse Blastocyst\ Developmental Cell 51(5):564–574.e6 (Nov 14, 2019) \ DOI: 10.1016/j.devcel.2019.10.012
Theresia Gutmann, Ingmar B. Schäfer, Chetan Poojari, Beate Brankatschk, Ilpo Vattulainen, Mike Strauss, Ünal Coskun\ Cryo-EM structure of the complete and ligand-saturated insulin receptor ectodomain\ Journal of Cell Biology 219(1) (Nov 14, 2019) \ DOI: 10.1083/jcb.201907210
Manja Wobus, Anna Mies, Valentina Magno, Cindy Welzel, Susann Winter, Friedrich Stoelzel, Carsten Werner, Martin Bornhaeuser, Uwe Platzbecker\ Altered Structure and Function of Mesenchymal Stromal Cell-Derived Extracellular Matrix in MDS Can be Restored By Luspatercept\ Blood 134(Supplement_1):1699–1699 (Nov 14, 2019) \ DOI: 10.1182/blood-2019-129814
Janelle Lauer, Sandra Segeletz, Alice Cezanne, Giambattista Guaitoli, Francesco Raimondi, Marc Gentzel, Vikram Alva, Michael Habeck, Yannis Kalaidzidis, Marius Ueffing, Andrei N Lupas, Christian Johannes Gloeckner, Marino Zerial\ Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding\ (Nov 13, 2019) \ DOI: 10.7554/eLife.46302
Abhik Basu, Jean-Francois Joanny, Frank Jülicher, Jacques Prost\ Casimir stresses in active nematic films\ New J. Phys. 21(12):123046 (Nov 11, 2019) \ DOI: 10.1088/1367-2630/ab5628
Katrin Wagner, Salvatore Girardo, Ruchi Goswami, Gonzalo Rosso, Elke Ulbricht, Paul Müller, Despina Soteriou, Nicole Träber, Jochen Guck\ Colloidal crystals of compliant microgel beads to study cell migration and mechanosensitivity in 3D\ Soft Matter 15(47):9776–9787 (Nov 7, 2019) \ DOI: 10.1039/c9sm01226e
Johanna Lattner, Weihua Leng, Elisabeth Knust, Marko Brankatschk, David Flores-Benitez\ Crumbs organizes the transport machinery by regulating apical levels of PI(4,5)P2 in Drosophila\ eLife 8 (Nov 7, 2019) \ DOI: 10.7554/elife.50900
Felix Lansing, Maciej Paszkowski-Rogacz, Lukas Theo Schmitt, Paul Martin Schneider, Teresa Rojo Romanos, Jan Sonntag, Frank Buchholz\ A heterodimer of evolved designer-recombinases precisely excises a human genomic DNA locus\ Nucleic Acids Research 48(1):472–485 (Nov 4, 2019) \ DOI: 10.1093/nar/gkz1078
Frank Jülicher\ Suzanne Eaton (1959-2019)\ Development 146(21) (Nov 4, 2019) \ DOI: 10.1242/dev.185538
Oliver Beutel, Riccardo Maraspini, Karina Pombo-García, Cécilie Martin-Lemaitre, Alf Honigmann\ Phase Separation of Zonula Occludens Proteins Drives Formation of Tight Junctions\ Cell 179(4), 923-936.e11 (Oct 31, 2019) \ DOI: 10.1016/j.cell.2019.10.011
Alexander Mietke, V. Jemseena, K. Vijay Kumar, Ivo F. Sbalzarini, Frank Jülicher\ Minimal model of cellular symmetry breaking\ Phys. Rev. Lett. 123, 188101 (Oct 28, 2019) \ DOI: 10.1103/PhysRevLett.123.188101
Alexis R. Barr, Jörg Mansfeld\ FEBS Letters Special Issue: Cell Cycle Control\ FEBS Letters 593(20):2803–2804 (Oct 28, 2019) \ DOI: 10.1002/1873-3468.13638
Ralf Zimmermann, Jérôme F.L. Duval, Carsten Werner\ On the analysis of ionic surface conduction to unravel charging processes at macroscopic soft and hard solid–liquid interfaces\ Current Opinion in Colloid & Interface Science 44:177–187 (Oct 28, 2019) \ DOI: 10.1016/j.cocis.2019.10.004
Yan Ge, Philipp Rosendahl, Claudio Duran, Nicole Topfner, Sara Ciucci, Jochen Guck, Carlo Vittorio Cannistraci\ Cell Mechanics Based Computational Classification of Red Blood Cells Via Machine Intelligence Applied to Morpho-Rheological Markers\ IEEE/ACM Trans. Comput. Biol. and Bioinf. 18(4):1405–1415 (Oct 28, 2019) \ DOI: 10.1109/tcbb.2019.2945762
Dejan Husman, Petra B. Welzel, Steffen Vogler, Laura J. Bray, Nicole Träber, Jens Friedrichs, Vincent Körber, Mikhail V. Tsurkan, Uwe Freudenberg, Julian Thiele, Carsten Werner\ Multiphasicmicrogel-in-gelmaterials to recapitulate cellular mesoenvironmentsin vitro\ Biomater. Sci. 8(1):101–108 (Oct 25, 2019) \ DOI: 10.1039/c9bm01009b
Kayvan Forouhesh Tehrani, Nektarios Koukourakis, Jürgen Czarske, Luke Mortensen\ Characterization of memory effect in juvenile mouse skull for imaging through intact bone\ Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP) (Oct 24, 2019) \ DOI: 10.1364/boda.2019.jt4a.27
Nektarios Koukourakis, Jürgen Czarske\ Adaptive hybrid illumination microscopy for Zebrafish screening\ Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP) (Oct 24, 2019) \ DOI: 10.1364/ntm.2019.nt3c.2
Markian Pryshliak, Ahmet Hazini, Klaus Knoch, Babette Dieringer, Beatrice Tolksdorf, Michele Solimena, Jens Kurreck, Sandra Pinkert, Henry Fechner\ MiR‐375‐mediated suppression of engineered coxsackievirus B3 in pancreatic cells\ FEBS Letters 594(4):763–775 (Oct 23, 2019) \ DOI: 10.1002/1873-3468.13647
Lucas Schirmer, Karolina Chwalek, Mikhail V. Tsurkan, Uwe Freudenberg, Carsten Werner\ Glycosaminoglycan-based hydrogels with programmable host reactions\ Biomaterials 228:119557 (Oct 23, 2019) \ DOI: 10.1016/j.biomaterials.2019.119557
Nusrat Jahan Lisa, Tuan Duy Anh Nguyen, Dirk Habich, Akash Kumar, Wolfgang Lehner\ High-Throughput BitPacking Compression\ 2019 22nd Euromicro Conference on Digital System Design (DSD) (Oct 22, 2019) \ DOI: 10.1109/dsd.2019.00101
Azaam Aziz, Mariana Medina-Sánchez*, Nektarios Koukourakis, Jiawei Wang, Robert Kuschmierz, Hannes Radner, Jürgen W. Czarske, Oliver G. Schmidt*\ Real-Time IR Tracking of Single Reflective Micromotors through Scattering Tissues\ Adv Funct Mater, 1905272 (Oct 21, 2019) \ * corresponding authors \ DOI: 10.1002/adfm.201905272
Aryaman Gupta, Ulrik Günther, Pietro Incardona, Ata Deniz Aydin, Raimund Dachselt, Stefan Gumhold, Ivo F. Sbalzarini\ A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations\ IEEE 9th Symposium on Large Data Analysis and Visualization (LDAV), Vancouver, BC, Canada, 2019, pp. 95–96, (Oct 21, 2019) \ DOI: 10.1109/LDAV48142.2019.8944368
Johannes Baumgart, Marcel Kirchner, Stefanie Redemann, Alec Bond, Jeffrey Woodruff, Jean-Marc Verbavatz, Frank Jülicher, Thomas Müller-Reichert, Anthony A. Hyman, Jan Brugués\ Soluble tubulin is significantly enriched at mitotic centrosomes\ J. Cell Biol. jcb.201902069; (Oct 21, 2019) \ DOI: 10.1083/jcb.201902069
Moritz Kreysing\ Probing the Functional Role of Physical Motion in Development\ Dev Cell, 51(2) 135-144 (Oct 21, 2019) \ DOI: 10.1016/j.devcel.2019.10.002
Andres E. Ramos Ruiz, Johannes Gurtler, Robert Kuschmierz, Jurgen W. Czarske\ Measurement of the Local Sound Pressure on a Bias-Flow Liner Using High-Speed Holography and Tomographic Reconstruction\ IEEE Access 7:153466–153474 (Oct 17, 2019) \ DOI: 10.1109/access.2019.2948084
Pavel Tomancak\ Evolutionary history of tissue bending\ Science 366(6463):300–301 (Oct 17, 2019) \ DOI: 10.1126/science.aaz1289
Izaak Neri, Édgar Roldán, Simone Pigolotti, Frank Jülicher\ Integral fluctuation relations for entropy production at stopping times\ J. Stat. Mech. 2019(10):104006 (Oct 16, 2019) \ DOI: 10.1088/1742-5468/ab40a0
Jessica Bellmann, Ruchi Y. Goswami, Salvatore Girardo, Nelly Rein, Zohreh Hosseinzadeh, Michael R. Hicks, Volker Busskamp, April D. Pyle, Carsten Werner, Jared Sterneckert\ A customizable microfluidic platform for medium-throughput modeling of neuromuscular circuits\ Biomaterials 225:119537 (Oct 8, 2019) \ DOI: 10.1016/j.biomaterials.2019.119537
Julian Lich, Tino Wollmann, Angelos Filippatos, Maik Gude, Jürgen Czarske, Robert Kuschmierz\ Diffraction-grating-based insitu displacement, tilt, and strain measurements on high-speed composite rotors\ Appl. Opt. 58(29):8021 (Oct 8, 2019) \ DOI: 10.1364/ao.58.008021
Jana Sievers, Stefan Zschoche, Ron Dockhorn, Jens Friedrichs, Carsten Werner, Uwe Freudenberg\ Temperature-Induced Mechanomodulation of Interpenetrating Networks of Star Poly(ethylene glycol)–Heparin and Poly(N-isopropylacrylamide)\ ACS Appl. Mater. Interfaces 2019, 11, 45, 41862–41874 (Oct 7, 2019) \ DOI: 10.1021/acsami.9b11719
Simon Alberti, Serena Carra\ Nucleolus: A Liquid Droplet Compartment for Misbehaving Proteins\ Current Biology 29(19):R930–R932 (Oct 7, 2019) \ DOI: 10.1016/j.cub.2019.08.013
Helena S. Azevedo, Adam B. Braunschweig, Ryan C. Chiechi, Shelley A. Claridge, Leroy Cronin, Yuri Diaz Fernandez, Ten Feizi, Laura Hartmann, Mia Huang, Yoshiko Miura, Matteo Palma, Xinkai Qiu, Bart Jan Ravoo, Stephan Schmidt, W. Bruce Turnbull, Carsten Werner, Zijian Zheng, Dejian Zhou\ New directions in surface functionalization and characterization: general discussion\ Faraday Discuss. 219:252–261 (Oct 4, 2019) \ DOI: 10.1039/c9fd90064k
Sandra Pinkert, Markian Pryshliak, Kathleen Pappritz, Klaus Knoch, Ahmet Hazini, Babette Dieringer, Katrin Schaar, Fengquan Dong, Luisa Hinze, Jie Lin, Dirk Lassner, Robert Klopfleisch, Michele Solimena, Carsten Tschöpe, Ziya Kaya, Muhammad El-Shafeey, Antje Beling, Jens Kurreck, Sophie Van Linthout, Karin Klingel, Henry Fechner\ Development of a new mouse model for coxsackievirus-induced myocarditis by attenuating coxsackievirus B3 virulence in the pancreas\ Cardiovascular Research 116(10):1756–1766 (Oct 4, 2019) \ DOI: 10.1093/cvr/cvz259
Andreas B Gevaert, Volker Adams, Martin Bahls, T Scott Bowen, Veronique Cornelissen, Marcus Dörr, Dominique Hansen, Hareld MC Kemps, Paul Leeson, Emeline M Van Craenenbroeck, Nicolle Kränkel\ Towards a personalised approach in exercise-based cardiovascular rehabilitation: How can translational research help? A ‘call to action’ from the Section on Secondary Prevention and Cardiac Rehabilitation of the European Association of Preventive Cardiology\ Eur J Prev Cardiolog 27(13):1369–1385 (Oct 4, 2019) \ DOI: 10.1177/2047487319877716
Ana L. Cordeiro, Markus Rückel, Frank Bartels, Manfred F. Maitz, Lars D. Renner, Carsten Werner\ Protein adsorption dynamics to polymer surfaces revisited—A multisystems approach\ Biointerphases 14(5) (Oct 2, 2019) \ DOI: 10.1116/1.5121249
Ben D. Cox, Maximina H. Yun, Kenneth D. Poss\ Can laboratory model systems instruct human limb regeneration?\ Development 146(20):dev181016 (Oct 2, 2019) \ DOI: 10.1242/dev.181016
Hannes Mutschler, Tom Robinson, T.‐Y. Dora Tang, Seraphine Wegner\ Special Issue on Bottom‐Up Synthetic Biology\ ChemBioChem 20(20):2533–2534 (Oct 1, 2019) \ DOI: 10.1002/cbic.201900507
J.W. Czarske, E. Scharf, R. Kuschmierz\ Fast 3D imaging with lensless holographic endoscopy employing coherent fiber bundles\ Frontiers in Optics + Laser Science APS/DLS (Oct 1, 2019) \ DOI: 10.1364/fio.2019.fm3f.3
Polina Anikeeva, Edward Boyden, Clifford Brangwynne, Ibrahim I. Cissé, Oliver Fiehn, Petra Fromme, Anne-Claude Gingras, Casey S. Greene, Edith Heard, Stefan W. Hell, Elizabeth Hillman, Grant Jay Jensen, Rachel Karchin, Laura L. Kiessling, Benjamin P. Kleinstiver, Rob Knight, Philipp Kukura, Madeline A. Lancaster, Nicholas Loman, Loren Looger, Emma Lundberg, Qingming Luo, Atsushi Miyawaki, Eugene W. Myers, Garry P. Nolan, Paola Picotti, Wolf Reik, Markus Sauer, Alex K. Shalek, Jay Shendure, Nikolai Slavov, Amos Tanay, Olga Troyanskaya, David van Valen, Hong-Wei Wang, Chengqi Yi, Peng Yin, Magdalena Zernicka-Goetz, Xiaowei Zhuang\ Voices in methods development\ Nat Methods 16(10):945–951 (Sep 27, 2019) \ DOI: 10.1038/s41592-019-0585-6
Stephan W. Grill, Hugues Chaté\ Editorial: Physics and Life\ Phys. Rev. Lett. 123 (Sep 26, 2019) \ DOI: 10.1103/PhysRevLett.123.130001
Gary I. Brierly, Jiongyu Ren, Jeremy Baldwin, Siamak Saifzadeh, Christina Theodoropoulos, Mikhail V. Tsurkan, Anthony Lynham, Edward Hsu, Dimitrios Nikolarakos, Carsten Werner, Maria A. Woodruff, Dietmar W. Hutmacher, Laura J. Bray\ Investigation of Sustained BMP Delivery in the Prevention of Medication‐Related Osteonecrosis of the Jaw (MRONJ) in a Rat Model\ Macromolecular Bioscience 19(11) (Sep 24, 2019) \ DOI: 10.1002/mabi.201900226
Elvis Koci, Dana Kuban, Nico Luettig, Dominik Olwig, Maik Thiele, Julius Gonsior, Wolfgang Lehner, Oscar Romero\ XLIndy\ Proceedings of the ACM Symposium on Document Engineering 2019 (Sep 19, 2019) \ DOI: 10.1145/3342558.3345409
Gregory C. Addicks, Caroline E. Brun, Marie-Claude Sincennes, John Saber, Christopher J. Porter, A. Francis Stewart, Patricia Ernst, Michael A. Rudnicki\ MLL1 is required for PAX7 expression and satellite cell self-renewal in mice\ Nat Commun 10(1), 4256 (Sep 18, 2019) \ DOI: 10.1038/s41467-019-12086-9
Gonzalo Rosso, Jochen Guck\ Mechanical changes of peripheral nerve tissue microenvironment and their structural basis during development\ APL Bioengineering 3(3) (Sep 17, 2019) \ DOI: 10.1063/1.5108867
Katrina J. Binger, Martin Neukam, Sudhir Gopal Tattikota, Fatimunnisa Qadri, Dmytro Puchkov, Diana M. Willmes, Sabrina Wurmsee, Sabrina Geisberger, Ralf Dechend, Klemens Raile, Thomas Kurth, Genevieve Nguyen, Matthew N. Poy, Michele Solimena, Dominik N. Muller, Andreas L. Birkenfeld\ Atp6ap2 deletion causes extensive vacuolation that consumes the insulin content of pancreatic β cells\ Proc. Natl. Acad. Sci. U.S.A. 116(40):19983–19988 (Sep 17, 2019) \ DOI: 10.1073/pnas.1903678116
Benedikt Krug, Nektarios Koukourakis, Juergen W. Czarske\ Impulsive stimulated Brillouin microscopy for non-contact, fast mechanical investigations of hydrogels\ Optics Express 27 (19), 26910–26923 (Sep 16, 2019) \ DOI: 10.1364/OE.27.026910
Jochen Guck\ Some thoughts on the future of cell mechanics\ Biophys Rev 11(5):667–670 (Sep 16, 2019) \ DOI: 10.1007/s12551-019-00597-0
S. Ehrig, B. Schamberger, C. M. Bidan, A. West, C. Jacobi, K. Lam, P. Kollmannsberger, A. Petersen, P. Tomancak, K. Kommareddy, F. D. Fischer, P. Fratzl, John W. C. Dunlop\ Surface tension determines tissue shape and growth kinetics\ Sci. Adv. 5(9) (Sep 11, 2019) \ DOI: 10.1126/sciadv.aav9394
Mario Ivankovic, Radmila Haneckova, Albert Thommen, Markus A. Grohme, Miquel Vila-Farré, Steffen Werner, Jochen C. Rink\ Model systems for regeneration: planarians\ Development 146(17) (Sep 11, 2019) \ DOI: 10.1242/dev.167684
Malte Schröder, Marc Timme\ Asymmetry in repeated isotropic rotations\ Phys. Rev. Research 1, 023012 (Sep 10, 2019) \ DOI: 10.1103/PhysRevResearch.1.023012
Sara Nagelberg, Amy Goodling, Kaushikaram Subramanian, George Barbastathis, Moritz Kreysing, Tim Swager, Lauren Zarzar, Mathias Kolle\ Bi-phase emulsion droplets as dynamic fluid optical systems\ EPJ Web Conf. 215:13003 (Sep 10, 2019) \ DOI: 10.1051/epjconf/201921513003
Johannes Pietrzyk, Dirk Habich, Patrick Damme, Erich Focht, Wolfgang Lehner\ Evaluating the Vector Supercomputer SX-Aurora TSUBASA as a Co-Processor for In-Memory Database Systems\ Datenbank Spektrum 19(3):183–197 (Sep 9, 2019) \ DOI: 10.1007/s13222-019-00323-w
Paul Müller, Shada Abuhattum, Stephanie Möllmert, Elke Ulbricht, Anna V. Taubenberger, Jochen Guck\ nanite: using machine learning to assess the quality of atomic force microscopy-enabled nano-indentation data\ BMC Bioinformatics 20(1), 465 (Sep 9, 2019) \ DOI: 10.1186/s12859-019-3010-3
Charlie Duclut, Niladri Sarkar, Jacques Prost, Frank Jülicher\ Fluid pumping and active flexoelectricity can promote lumen nucleation in cell assemblies\ Proc. Natl. Acad. Sci. USA, 116, 19264 (Sep 6, 2019) \ DOI: 10.1073/pnas.1908481116
Marko Barovic, Marius Distler, Eyke Schöniger, Nicole Radisch, Daniela Aust, Jürgen Weitz, Mark Ibberson, Anke M. Schulte, Michele Solimena\ Metabolically phenotyped pancreatectomized patients as living donors for the study of islets in health and diabetes\ Molecular Metabolism 27:S1–S6 (Sep 6, 2019) \ DOI: 10.1016/j.molmet.2019.06.006
Mohammad A. Rahman, Cordula Reuther, Frida W. Lindberg, Martina Mengoni, Aseem Salhotra, Georg Heldt, Heiner Linke, Stefan Diez, Alf Månsson\ Regeneration of Assembled, Molecular-Motor-Based Bionanodevices\ Nano Lett. 19(10):7155–7163 (Sep 5, 2019) \ DOI: 10.1021/acs.nanolett.9b02738
Axel Voigt\ Fluid deformable surfaces\ J. Fluid Mech. 878, 1–4 (Sep 4, 2019) \ DOI: 10.1017/jfm.2019.549
Rana Faisal Munir, Alberto Abelló, Oscar Romero, Maik Thiele, Wolfgang Lehner\ Automatically Configuring Parallelism for Hybrid Layouts\ Communications in Computer and Information Science 120–125 (Sep 3, 2019) \ DOI: 10.1007/978-3-030-30278-8_15
Valerie Siahaan, Jochen Krattenmacher, Anthony A. Hyman, Stefan Diez, Amayra Hernández-Vega, Zdenek Lansky, Marcus Braun\ Kinetically distinct phases of tau on microtubules regulate kinesin motors and severing enzymes\ Nat. Cell Biol. 21, 1086–1092, (Sep 2, 2019) \ DOI: 10.1038/s41556-019-0374-6
David Weik, Christian Kupsch, Richard Nauber, Lars Büttner, Jürgen Czarske\ Uncertainty comparison of velocity estimators for ultrasound flow imaging in narrow channels / Messunsicherheitsvergleich von Geschwindigkeitsschätzern der Ultraschallströmungsbildgebung in schmalen Kanälen\ tm - Technisches Messen 86(s1):7–11 (Aug 28, 2019) \ DOI: 10.1515/teme-2019-0061
L Mediani, J Guillén-Boixet, S Alberti, S Carra\ Nucleoli and Promyelocytic Leukemia Protein (PML) bodies are phase separated nuclear protein quality control compartments for misfolded proteins\ Molecular & Cellular Oncology 6(6):e1415624 (Aug 27, 2019) \ DOI: 10.1080/23723556.2019.1652519
Sabrina Spiller, Nydia Panitz, Yanuar Dwi Putra Limasale, Passant Morsi Atallah, Lucas Schirmer, Kathrin Bellmann-Sickert, Joanna Blaszkiewicz, Sebastian Koehling, Uwe Freudenberg, Jörg Rademann, Carsten Werner, Annette G. Beck-Sickinger\ Modulation of Human CXCL12 Binding Properties to Glycosaminoglycans To Enhance Chemotactic Gradients\ ACS Biomater. Sci. Eng. 5(10):5128–5138 (Aug 26, 2019) \ DOI: 10.1021/acsbiomaterials.9b01139
Karin D. Prummel, Christopher Hess, Susan Nieuwenhuize, Hugo J. Parker, Katherine W. Rogers, Iryna Kozmikova, Claudia Racioppi, Eline C. Brombacher, Anna Czarkwiani, Dunja Knapp, Sibylle Burger, Elena Chiavacci, Gopi Shah, Alexa Burger, Jan Huisken, Maximina H. Yun, Lionel Christiaen, Zbynek Kozmik, Patrick Müller, Marianne Bronner, Robb Krumlauf, Christian Mosimann\ A conserved regulatory program initiates lateral plate mesoderm emergence across chordates\ Nat Commun 10, 3857 (Aug 26, 2019) \ DOI: 10.1038/s41467-019-11561-7
Baldwin Nsonga, Gerik Scheuermann, Stefan Gumhold, Jordi Ventosa-Molina, Denis Koschichow, Jochen Frohlich\ Analysis of the Near-Wall Flow in a Turbine Cascade by Splat Visualization\ IEEE Trans. Visual. Comput. Graphics 1–1 (Aug 22, 2019) \ DOI: 10.1109/tvcg.2019.2934367
Oxana Bereshchenko, Oriana Lo Re, Fedor Nikulenkov, Sara Flamini, Jana Kotaskova, Tommaso Mazza, Marguerite-Marie Le Pannérer, Marcus Buschbeck, Cesarina Giallongo, Giuseppe Palumbo, Giovanni Li Volti, Valerio Pazienza, Libor Cervinek, Carlo Riccardi, Lumir Krejci, Sarka Pospisilova, A. Francis Stewart, Manlio Vinciguerra\ Deficiency and haploinsufficiency of histone macroH2A1.1 in mice recapitulate hematopoietic defects of human myelodysplastic syndrome\ Clin Epigenet 11(1), 121 (Aug 22, 2019) \ DOI: 10.1186/s13148-019-0724-z
Clyde Savio Pinto, Ameya Khandekar, Rajasekaran Bhavna, Petra Kiesel, Gaia Pigino, Mahendra Sonawane\ Microridges are apical epithelial projections formed of F-actin networks that organize the glycan layer\ Sci Rep 9(1), 12191 (Aug 21, 2019) \ DOI: 10.1038/s41598-019-48400-0
Simon Alberti, Dorothee Dormann\ Liquid–Liquid Phase Separation in Disease\ Annu. Rev. Genet. 53(1):171–194 (Aug 20, 2019) \ DOI: 10.1146/annurev-genet-112618-043527
Caren Norden, Virginie Lecaudey\ Collective cell migration: general themes and new paradigms\ Curr Opin Genet Dev. 57, 54–60. (Aug 18, 2019) \ DOI: 10.1016/j.gde.2019.06.013
Dimitri Eigel, Lida Zoupi, Sowmya Sekizar, Petra B. Welzel, Carsten Werner, Anna Williams, Ben Newland\ Cryogel scaffolds for regionally constrained delivery of lysophosphatidylcholine to central nervous system slice cultures: A model of focal demyelination for multiple sclerosis research\ Acta Biomaterialia 97:216–229 (Aug 16, 2019) \ DOI: 10.1016/j.actbio.2019.08.030
Iskra Yanakieva, Anna Erzberger, Marija Matejčić, Carl D. Modes, Caren Norden\ Cell and tissue morphology determine actin-dependent nuclear migration mechanisms in neuroepithelia\ Journal of Cell Biology 218(10):3272–3289 (Aug 16, 2019) \ DOI: 10.1083/jcb.201901077
Huaisong Yong, Eva Bittrich, Petra Uhlmann, Andreas Fery, Jens-Uwe Sommer\ Co-Nonsolvency Transition of Poly(N-isopropylacrylamide) Brushes in a Series of Binary Mixtures\ Macromolecules 52(16):6285–6293 (Aug 14, 2019) \ DOI: 10.1021/acs.macromol.9b01286
Aaron M. Wenger, Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard J. Hall, Gregory T. Concepcion, Jana Ebler, Arkarachai Fungtammasan, Alexey Kolesnikov, Nathan D. Olson, Armin Töpfer, Michael Alonge, Medhat Mahmoud, Yufeng Qian, Chen-Shan Chin, Adam M. Phillippy, Michael C. Schatz, Gene Myers, Mark A. DePristo, Jue Ruan, Tobias Marschall, Fritz J. Sedlazeck, Justin M. Zook, Heng Li, Sergey Koren, Andrew Carroll, David R. Rank, Michael W. Hunkapiller\ Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome\ Nat Biotechnol 37(10):1155–1162 (Aug 12, 2019) \ DOI: 10.1038/s41587-019-0217-9
Maurício Rocha-Martins, Beatriz C. de Toledo, Pedro L. Santos-França, Viviane M. Oliveira-Valença, Carlos H. Vieira-Vieira, Gabriel E. Matos-Rodrigues, Rafael Linden, Caren Norden, Rodrigo A. P. Martins, Mariana S. Silveira\ De novo genesis of retinal ganglion cells by targeted expression of Klf4 in vivo\ Development (Aug 12, 2019) \ DOI: 10.1242/dev.176586
Alexander Krause, Frank Ebner, Dirk Habich, Wolfgang Lehner\ Trading Memory versus Workload Overhead in Graph Pattern Matching on Multiprocessor Systems\ Proceedings of the 8th International Conference on Data Science, Technology and Applications (Aug 9, 2019) \ DOI: 10.5220/0008116904000407
Holger J. Meyer, Hannes Grunert, Tim Waizenegger, Lucas Woltmann, Claudio Hartmann, Wolfgang Lehner, Mahdi Esmailoghli, Sergey Redyuk, Ricardo Martinez, Ziawasch Abedjan, Ariane Ziehn, Tilmann Rabl, Volker Markl, Christian Schmitz, Dhiren Devinder Serai, Tatiane Escobar Gava\ Particulate Matter Matters—The Data Science Challenge @ BTW 2019\ Datenbank Spektrum 19(3):165–182 (Aug 8, 2019) \ DOI: 10.1007/s13222-019-00322-x
Saminathan Ramakrishnan, Leonard Schärfen, Kristin Hunold, Sebastian Fricke, Guido Grundmeier, Michael Schlierf, Adrian Keller, Georg Krainer\ Enhancing the stability of DNA origami nanostructures: staple strand redesignversusenzymatic ligation\ Nanoscale 11(35):16270–16276 (Aug 5, 2019) \ DOI: 10.1039/c9nr04460d
Katharina B. Beer, Gholamreza Fazeli, Kristyna Judasova, Linda Irmisch, Jona Causemann, Jörg Mansfeld, Ann M. Wehman\ Degron-tagged reporters probe membrane topology and enable the specific labelling of membrane-wrapped structures\ Nat Commun 10(1), 3490 (Aug 2, 2019) \ DOI: 10.1038/s41467-019-11442-z
Elisa Maria Rieckhoff, Keisuke Ishihara, Jan Brugués\ How to tune spindle size relative to cell size?\ Current Opinion in Cell Biology (Aug 1, 2019) \ DOI: 10.1016/j.ceb.2019.06.007
Xiaozhu Zhang, Sarah Hallerberg, Moritz Matthiae, Dirk Witthaut, Marc Timme\ Fluctuation-Induced Distributed Resonances in Oscillatory Networks\ Science Adv. 5:eaav1027 (Jul 31, 2019) \ DOI: 10.1126/sciadv.aav1027
Christian Kupsch, Lukas Feierabend, Richard Nauber, Lars Büttner, Jürgen Czarske\ Flow investigation of complex suspension electrodes for battery applications using ultrasound imaging velocimetry\ Experimental Thermal and Fluid Science 109:109886 (Jul 31, 2019) \ DOI: 10.1016/j.expthermflusci.2019.109886
M. Handberg-Thorsager, V. Ulman, P. Tomançak, D. Arendt, M. Schubert\ A Behavioral Assay to Study Effects of Retinoid Pharmacology on Nervous System Development in a Marine Annelid\ Methods in Molecular Biology 193–207 (Jul 29, 2019) \ DOI: 10.1007/978-1-4939-9585-1_14
Anna V. Taubenberger, Salvatore Girardo, Nicole Träber, Elisabeth Fischer‐Friedrich, Martin Kräter, Katrin Wagner, Thomas Kurth, Isabel Richter, Barbara Haller, Marcus Binner, Dominik Hahn, Uwe Freudenberg, Carsten Werner, Jochen Guck\ 3D Microenvironment Stiffness Regulates Tumor Spheroid Growth and Mechanics via p21 and ROCK\ Adv. Biosys. 3(9) (Jul 24, 2019) \ DOI: 10.1002/adbi.201900128
Adrian Pascal Nievergelt, Gonzalo Alvarez Viar, Gaia Pigino\ Towards a mechanistic understanding of cellular processes by cryoEM\ Current Opinion in Structural Biology 58:149–158 (Jul 23, 2019) \ DOI: 10.1016/j.sbi.2019.06.008
Shengyu Shi, Hao Zhang, Jinping Qu, Gang Jin, Robert Kuschmierz, Jürgen Czarske\ Roundness measurement by employing laser Doppler distance sensor and error separation techniques (Conference Presentation)\ Optical Measurement Systems for Industrial Inspection XI (Jul 22, 2019) \ DOI: 10.1117/12.2524969
Elias Scharf, Robert Kuschmierz, Jürgen W. Czarske\ Video rate scanning endomicroscopy through a coherent fiber bundle using a galvo scanner (Conference Presentation)\ Optical Methods for Inspection, Characterization, and Imaging of Biomaterials IV (Jul 22, 2019) \ DOI: 10.1117/12.2526054
Nusrat Jahan Lisa, Annett Ungethüm, Dirk Habich, Wolfgang Lehner, Nguyen Duy Anh Tuan, Akash Kumar\ FPGA vs. SIMD: Comparison for Main Memory-Based Fast Column Scan\ Communications in Computer and Information Science 116–140 (Jul 19, 2019) \ DOI: 10.1007/978-3-030-26636-3_6
Georg Krainer, Sandro Keller, Michael Schlierf\ Structural dynamics of membrane-protein folding from single-molecule FRET\ Current Opinion in Structural Biology 58:124–137 (Jul 17, 2019) \ DOI: 10.1016/j.sbi.2019.05.025
Kassiani Skouloudaki, Ioannis Christodoulou, Dilan Khalili, Vasilios Tsarouhas, Christos Samakovlis, Pavel Tomancak, Elisabeth Knust, Dimitrios K. Papadopoulos\ Yorkie controls tube length and apical barrier integrity during airway development\ Journal of Cell Biology 218(8):2762–2781 (Jul 17, 2019) \ DOI: 10.1083/jcb.201809121
Ekaterina Balaian, Heike Weidner, Manja Wobus, Ulrike Baschant, Angela Jacobi, Anna Mies, Martin Bornhäuser, Jochen Guck, Lorenz C. Hofbauer, Martina Rauner, Uwe Platzbecker\ Effects of rigosertib on the osteo-hematopoietic niche in myelodysplastic syndromes\ Ann Hematol 98(9):2063–2072 (Jul 16, 2019) \ DOI: 10.1007/s00277-019-03756-1
Anna T. Bajur, K. Venkatesan Iyer, Elisabeth Knust\ Cytocortex-dependent dynamics of Drosophila Crumbs controls junctional stability and tension during germ band retraction\ Journal of Cell Science 132(15) (Jul 12, 2019) \ DOI: 10.1242/jcs.228338
Tim-Oliver Buchholz, Alexander Krull, Réza Shahidi, Gaia Pigino, Gáspár Jékely, Florian Jug\ Content-aware image restoration for electron microscopy\ Methods in Cell Biology 277–289 (Jul 11, 2019) \ DOI: 10.1016/bs.mcb.2019.05.001
Mathieu Richard, Carles Blanch-Mercader, Hajer Ennomani, Wenxiang Cao, Enrique M. De La Cruz, Jean-François Joanny, Frank Jülicher, Laurent Blanchoin, Pascal Martin\ Active cargo positioning in antiparallel transport networks\ PNAS 116 (30) 14835–14842 (Jul 9, 2019) \ DOI: 10.1073/pnas.1900416116
Stefan Rothe, Hannes Radner, Nektarios koukourakis, Jürgen W. Czarske\ Fast Transmission Matrix Measurement System for Multimode Optical Networks\ Imaging and Applied Optics 2019 (COSI, IS, MATH, pcAOP) (Jul 9, 2019) \ DOI: 10.1364/cosi.2019.cth2c.3
Laura Mediani, Jordina Guillén‐Boixet, Jonathan Vinet, Titus M Franzmann, Ilaria Bigi, Daniel Mateju, Arianna D Carrà, Federica F Morelli, Tatiana Tiago, Ina Poser, Simon Alberti, Serena Carra\ Defective ribosomal products challenge nuclear function by impairing nuclear condensate dynamics and immobilizing ubiquitin\ The EMBO Journal 38(15) (Jul 9, 2019) \ DOI: 10.15252/embj.2018101341
Mattias Hogvall, Bruno C. Vellutini, José M. Martín-Durán, Andreas Hejnol, Graham E. Budd, Ralf Janssen\ Embryonic expression of priapulid Wnt genes\ Dev Genes Evol 229(4):125–135 (Jul 4, 2019) \ DOI: 10.1007/s00427-019-00636-6
Adrià Voltes, Covadonga F. Hevia, Carolyn Engel-Pizcueta, Chaitanya Dingare, Simone Calzolari, Javier Terriente, Caren Norden, Virginie Lecaudey, Cristina Pujades\ Yap/Taz-TEAD activity links mechanical cues to progenitor cell behavior during zebrafish hindbrain segmentation\ Development 146(14) (Jul 4, 2019) \ DOI: 10.1242/dev.176735
Nektarios Koukourakis, Wenjie Wang, Katrin Philipp, Jürgen Czarske\ Quantitative phase imaging for in-situ monitoring of adaptive lenses\ Digital Holography and Three-Dimensional Imaging 2019 (Jul 3, 2019) \ DOI: 10.1364/dh.2019.m4b.5
Lars Büttner, Martin Thümmler, Nektarios Koukourakis, Jürgen Czarske\ Transmission of Structured Light Through a Multimode Fiber Using Digital Optical Phase Conjugation\ Digital Holography and Three-Dimensional Imaging 2019 (Jul 3, 2019) \ DOI: 10.1364/dh.2019.th3a.33
Katrin Philipp, Florian Lemke, Stefan Scholz, Ulrike Wallrabe, Matthias C. Wapler, Nektarios Koukourakis, Jürgen W. Czarske\ Diffraction-limited axial scanning in thick biological tissue with an aberration-correcting adaptive lens\ Sci Rep 9(1), 9532 (Jul 2, 2019) \ DOI: 10.1038/s41598-019-45993-4
Taraneh Zarin, Bob Strome, Alex N Nguyen Ba, Simon Alberti, Julie D Forman-Kay, Alan M Moses\ Proteome-wide signatures of function in highly diverged intrinsically disordered regions\ eLife 8 (Jul 2, 2019) \ DOI: 10.7554/elife.46883
N. Thieme, M. Keil, D. Meier, P. Bönisch, K. Dadzis, O. Pätzold, M. Stelter, L. Büttner, J. Czarske\ Directional solidification of gallium under time-dependent magnetic fields with in situ measurements of the melt flow and the solid-liquid interface\ Journal of Crystal Growth 522:221–229 (Jul 1, 2019) \ DOI: 10.1016/j.jcrysgro.2019.06.034
Jessica Mandrioli, Laura Mediani, Simon Alberti, Serena Carra\ ALS and FTD: Where RNA metabolism meets protein quality control\ Seminars in Cell & Developmental Biology 99:183–192 (Jul 1, 2019) \ DOI: 10.1016/j.semcdb.2019.06.003
Tomas Vicar, Jan Balvan, Josef Jaros, Florian Jug, Radim Kolar, Michal Masarik, Jaromir Gumulec\ Cell segmentation methods for label-free contrast microscopy: review and comprehensive comparison\ BMC Bioinformatics 20(1), 360 (Jun 28, 2019) \ DOI: 10.1186/s12859-019-2880-8
Franz Kapplusch, Felix Schulze, Sabrina Rabe-Matschewsky, Susanne Russ, Maik Herbig, Michael Christian Heymann, Katharina Schoepf, Robert Stein, Ursula Range, Angela Rösen-Wolff, Stefan Winkler, Christian Michael Hedrich, Jochen Guck, Sigrun Ruth Hofmann\ CASP1 variants influence subcellular caspase-1 localization, pyroptosome formation, pro-inflammatory cell death and macrophage deformability\ Clinical Immunology 208:108232 (Jun 26, 2019) \ DOI: 10.1016/j.clim.2019.06.008
Michael V. Sefton, Claudia Sperling, Manfred F. Maitz, Carsten Werner\ The blood compatibility challenge: Editorial introduction\ Acta Biomaterialia 94:1 (Jun 25, 2019) \ DOI: 10.1016/j.actbio.2019.06.041
Ruslan Rust, Lisa Grönnert, Christina Gantner, Alinda Enzler, Geertje Mulders, Rebecca Z. Weber, Arthur Siewert, Yanuar D. P. Limasale, Andrea Meinhardt, Michael A. Maurer, Andrea M. Sartori, Anna-Sophie Hofer, Carsten Werner, Martin E. Schwab\ Nogo-A targeted therapy promotes vascular repair and functional recovery following stroke\ Proc. Natl. Acad. Sci. U.S.A. 116(28):14270–14279 (Jun 25, 2019) \ DOI: 10.1073/pnas.1905309116
Mikhail Zarubin, Patrick Damme, Thomas Kissinger, Dirk Habich, Wolfgang Lehner, Thomas Willhalm\ Integer Compression in NVRAM-centric Data Stores\ Proceedings of the 15th International Workshop on Data Management on New Hardware (Jun 24, 2019) \ DOI: 10.1145/3329785.3329923
Lucas Lersch, Wolfgang Lehner, Ismail Oukid\ Persistent Buffer Management with Optimistic Consistency\ Proceedings of the 15th International Workshop on Data Management on New Hardware (Jun 24, 2019) \ DOI: 10.1145/3329785.3329931
Anna K.L. Liess, Alena Kucerova, Kristian Schweimer, Lu Yu, Theodoros I. Roumeliotis, Mathias Diebold, Olexandr Dybkov, Christoph Sotriffer, Henning Urlaub, Jyoti S. Choudhary, Jörg Mansfeld, Sonja Lorenz\ Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination\ Structure 27(8):1195–1210.e7 (Jun 20, 2019) \ DOI: 10.1016/j.str.2019.05.008
Manfred F. Maitz, M. Cristina L. Martins, Niels Grabow, Claudia Matschegewski, Nan Huang, Elliot L. Chaikof, Mário A. Barbosa, Carsten Werner, Claudia Sperling\ The blood compatibility challenge. Part 4: Surface modification for hemocompatible materials: Passive and active approaches to guide blood-material interactions\ Acta Biomaterialia 94:33–43 (Jun 19, 2019) \ DOI: 10.1016/j.actbio.2019.06.019
Maud Gorbet, Claudia Sperling, Manfred F. Maitz, Christopher A. Siedlecki, Carsten Werner, Michael V. Sefton\ The blood compatibility challenge. Part 3: Material associated activation of blood cascades and cells\ Acta Biomaterialia 94:25–32 (Jun 19, 2019) \ DOI: 10.1016/j.actbio.2019.06.020
Frank Tetzel, Romans Kasperovics, Wolfgang Lehner\ Graph Traversals for Regular Path Queries\ Proceedings of the 2nd Joint International Workshop on Graph Data Management Experiences & Systems (GRADES) and Network Data Analytics (NDA) (Jun 19, 2019) \ DOI: 10.1145/3327964.3328494
Ralf Zimmermann, Christoph Hentschel, Felix Schrön, Denise Moedder, Teresa Büttner, Passant Atallah, Thomas Wegener, Thomas Gehring, Steffen Howitz, Uwe Freudenberg, Carsten Werner\ High resolution bioprinting of multi-component hydrogels\ Biofabrication 11(4):045008 (Jun 18, 2019) \ DOI: 10.1088/1758-5090/ab2aa1
Alexander Krause, Thomas Kissinger, Dirk Habich, Wolfgang Lehner\ NeMeSys - A Showcase of Data Oriented Near Memory Graph Processing\ Proceedings of the 2019 International Conference on Management of Data (Jun 18, 2019) \ DOI: 10.1145/3299869.3320226
Dirk Habich, Patrick Damme, Annett Ungethüm, Johannes Pietrzyk, Alexander Krause, Juliana Hildebrandt, Wolfgang Lehner\ MorphStore - In-Memory Query Processing based on Morphing Compressed Intermediates LIVE\ Proceedings of the 2019 International Conference on Management of Data (Jun 18, 2019) \ DOI: 10.1145/3299869.3320234
Patrick Damme, Annett Ungethüm, Juliana Hildebrandt, Dirk Habich, Wolfgang Lehner\ From a Comprehensive Experimental Survey to a Cost-based Selection Strategy for Lightweight Integer Compression Algorithms\ ACM Trans. Database Syst. 44(3):1–46 (Jun 18, 2019) \ DOI: 10.1145/3323991
Hernán Morales-Navarrete, Hidenori Nonaka, André Scholich, Fabián Segovia-Miranda, Walter de Back, Kirstin Meyer, Roman L Bogorad, Victor Koteliansky, Lutz Brusch, Yannis Kalaidzidis*, Frank Jülicher*, Benjamin M Friedrich*, Marino Zerial*\ Liquid-crystal organization of liver tissue\ eLife 2019;8:e44860 (Jun 17, 2019) \ * corresponding authors \ DOI: 10.7554/ELIFE.44860.001
Angela Jacobi, Philipp Rosendahl, Martin Kräter, Marta Urbanska, Maik Herbig, Jochen Guck\ Analysis of Biomechanical Properties of Hematopoietic Stem and Progenitor Cells Using Real-Time Fluorescence and Deformability Cytometry\ Methods in Molecular Biology 135–148 (Jun 13, 2019) \ DOI: 10.1007/978-1-4939-9574-5_11
Piero Marchetti, Anke M. Schulte, Lorella Marselli, Eyke Schoniger, Marco Bugliani, Werner Kramer, Lut Overbergh, Susanne Ullrich, Anna L. Gloyn, Mark Ibberson, Guy Rutter, Philippe Froguel, Leif Groop, Mark I. McCarthy, Francesco Dotta, Raphael Scharfmann, Christophe Magnan, Decio L. Eizirik, Chantal Mathieu, Miriam Cnop, Bernard Thorens, Michele Solimena\ Fostering improved human islet research: a European perspective\ Diabetologia 62(8):1514–1516 (Jun 13, 2019) \ DOI: 10.1007/s00125-019-4911-4
Jeshlee Vijayakumar, Charlène Perrois, Marjorie Heim, Luc Bousset, Simon Alberti, Florence Besse\ The prion-like domain of Drosophila Imp promotes axonal transport of RNP granules in vivo\ Nat Commun 10(1), 2593 (Jun 13, 2019) \ DOI: 10.1038/s41467-019-10554-w
Guendalina Marini, Gaia Pigino\ Yeast membraneless compartments revealed by correlative light microscopy and electron tomography\ Methods in Cell Biology 103–117 (Jun 6, 2019) \ DOI: 10.1016/bs.mcb.2019.04.006
Dimitrios K. Papadopoulos, Pavel Tomancak\ Gene Regulation: Analog to Digital Conversion of Transcription Factor Gradients\ Current Biology 29(11):R422–R424 (Jun 3, 2019) \ DOI: 10.1016/j.cub.2019.04.052
Mattias Backman, Florian Flenkenthaler, Andreas Blutke, Maik Dahlhoff, Erik Ländström, Simone Renner, Julia Philippou-Massier, Stefan Krebs, Birgit Rathkolb, Cornelia Prehn, Michal Grzybek, Ünal Coskun, Michael Rothe, Jerzy Adamski, Martin Hrabĕ de Angelis, Rüdiger Wanke, Thomas Fröhlich, Georg J. Arnold, Helmut Blum, Eckhard Wolf\ Multi-omics insights into functional alterations of the liver in insulin-deficient diabetes mellitus\ Molecular Metabolism 26:30–44 (Jun 3, 2019) \ DOI: 10.1016/j.molmet.2019.05.011
Volker Hartenstein, Michaela Yuan, Amelia Younossi-Hartenstein, Aanavi Karandikar, F. Javier Bernardo-Garcia, Simon Sprecher, Elisabeth Knust\ Serial electron microscopic reconstruction of the drosophila larval eye: Photoreceptors with a rudimentary rhabdomere of microvillar-like processes\ Developmental Biology 453(1):56–67 (May 31, 2019) \ DOI: 10.1016/j.ydbio.2019.05.017
Baldwin Nsonga, Martin Niemann, Jochen Fröhlich, Joachim Staib, Stefan Gumhold, Gerik Scheuermann\ Detection and Visualization of Splat and Antisplat Events in Turbulent Flows\ IEEE Trans. Visual. Comput. Graphics 26(11):3147–3162 (May 31, 2019) \ DOI: 10.1109/tvcg.2019.2920157
Steven W. Poser, Oliver Otto, Carina Arps‐Forker, Yan Ge, Maik Herbig, Cordula Andree, Konrad Gruetzmann, Melissa F. Adasme, Szymon Stodolak, Polyxeni Nikolakopoulou, Deric M. Park, Alan Mcintyre, Mathias Lesche, Andreas Dahl, Petra Lennig, Stefan R. Bornstein, Evelin Schroeck, Barbara Klink, Ronen R. Leker, Marc Bickle, George P. Chrousos, Michael Schroeder, Carlo Vittorio Cannistraci, Jochen Guck, Andreas Androutsellis‐Theotokis\ Controlling distinct signaling states in cultured cancer cells provides a new platform for drug discovery\ FASEB j. 33(8):9235–9249 (May 30, 2019) \ DOI: 10.1096/fj.201802603rr
Volker Busskamp, JesusEduardo Rojo Arias\ Challenges in microRNAs’ targetome prediction and validation\ Neural Regen Res 14(10):1672 (May 30, 2019) \ DOI: 10.4103/1673-5374.257514
Felix Reichel, Johannes Mauer, Ahmad Ahsan Nawaz, Gerhard Gompper, Jochen Guck, Dmitry A. Fedosov\ High-Throughput Microfluidic Characterization of Erythrocyte Shapes and Mechanical Variability\ Biophysical Journal 117(1):14–24 (May 29, 2019) \ DOI: 10.1016/j.bpj.2019.05.022
Andre Galuschko, Jens-Uwe Sommer\ Co-Nonsolvency Response of a Polymer Brush: A Molecular Dynamics Study\ Macromolecules 52(11):4120–4130 (May 24, 2019) \ DOI: 10.1021/acs.macromol.9b00569
Lucas Woltmann, Claudio Hartmann, Maik Thiele, Dirk Habich, Wolfgang Lehner\ Cardinality estimation with local deep learning models\ Proceedings of the Second International Workshop on Exploiting Artificial Intelligence Techniques for Data Management (May 24, 2019) \ DOI: 10.1145/3329859.3329875
Rana Amini, Anastasia A. Labudina, Caren Norden\ Stochastic single cell migration leads to robust horizontal cell layer formation in the vertebrate retina\ Development 146(12) (May 24, 2019) \ DOI: 10.1242/dev.173450
Tiago Santos‐Ferreira, Maik Herbig, Oliver Otto, Madalena Carido, Mike O. Karl, Stylianos Michalakis, Jochen Guck, Marius Ader\ Morpho‐Rheological Fingerprinting of Rod Photoreceptors Using Real‐Time Deformability Cytometry\ Cytometry Pt A 95(11):1145–1157 (May 20, 2019) \ DOI: 10.1002/cyto.a.23798
Marta Zuzic, Jesus Eduardo Rojo Arias, Stefanie Gabriele Wohl, Volker Busskamp\ Retinal miRNA Functions in Health and Disease\ Genes 10(5):377 (May 17, 2019) \ DOI: 10.3390/genes10050377
Shady Sayed, Maciej Paszkowski-Rogacz, Lukas Theo Schmitt, Frank Buchholz\ CRISPR/Cas9 as a tool to dissect cancer mutations\ Methods 164-165:36–48 (May 10, 2019) \ DOI: 10.1016/j.ymeth.2019.05.007
Elisabeth Hoyer, Julius Knöppel, Martina Liebmann, Michael Steppert, Manuel Raiwa, Olivia Herczynski, Erik Hanspach, Susanne Zehner, Michael Göttfert, Satoru Tsushima, Karim Fahmy, Jana Oertel\ Calcium binding to a disordered domain of a type III-secreted protein from a coral pathogen promotes secondary structure formation and catalytic activity\ Sci Rep 9(1), 7115 (May 8, 2019) \ DOI: 10.1038/s41598-019-42898-0
David E. Breen, Liyuan Sui, Linge Bai, Frank Jülicher, Christian Dahmann\ Cell-level 3D reconstruction and quantification of the Drosophila wing imaginal disc\ International Journal of Bioinformatics Research and Applications, Vol. 15, No. 2 (May 6, 2019) \ DOI: 10.1504/IJBRA.2019.099577
Christoph Zwahr, Ralf Helbig, Carsten Werner, Andrés Fabián Lasagni\ Fabrication of multifunctional titanium surfaces by producing hierarchical surface patterns using laser based ablation methods\ Sci Rep 9(1), 6721 (Apr 30, 2019) \ DOI: 10.1038/s41598-019-43055-3
Christoph Tondera, Teuku Fawzul Akbar, Alvin Kuriakose Thomas, Weilin Lin, Carsten Werner, Volker Busskamp, Yixin Zhang, Ivan R. Minev\ Highly Conductive, Stretchable, and Cell‐Adhesive Hydrogel by Nanoclay Doping\ Small 15(27) (Apr 26, 2019) \ DOI: 10.1002/smll.201901406
Ceren Güneş, Maciej Paszkowski-Rogacz, Susann Rahmig, Shahryar Khattak, Aylin Camgöz, Martin Wermke, Andreas Dahl, Martin Bornhäuser, Claudia Waskow, Frank Buchholz\ Comparative RNAi Screens in Isogenic Human Stem Cells Reveal SMARCA4 as a Differential Regulator\ Stem Cell Reports 12(5):1084–1098 (Apr 25, 2019) \ DOI: 10.1016/j.stemcr.2019.03.012
D. Wenzel, S. Praetorius, A. Voigt\ Topological and geometrical quantities in active cellular structures\ The Journal of Chemical Physics 150(16) (Apr 23, 2019) \ DOI: 10.1063/1.5085766
Satu Kujawski, Mahendra Sonawane, Elisabeth Knust\ penner/lgl2is required for the integrity of the photoreceptor layer in the zebrafish retina\ Biology Open 8(4) (Apr 23, 2019) \ DOI: 10.1242/bio.041830
Martina Ugrinic, Andrew deMello, T.-Y. Dora Tang\ Microfluidic Tools for Bottom-Up Synthetic Cellularity\ Chem 5(7):1727–1742 (Apr 22, 2019) \ DOI: 10.1016/j.chempr.2019.03.012
Niladri Sarkar, Jacques Prost, Frank Jülicher\ Field induced cell proliferation and death in a model epithelium\ New J. Phys. 21 043035 (Apr 17, 2019) \ DOI: 10.1088/1367-2630/ab0a8d
Hauke Haehne, Jose Casadiego, Joachim Peinke, Marc Timme\ Detecting Hidden Units and Network Size from Perceptible Dynamics\ Phys. Rev. Lett. 122, 158301 (Apr 16, 2019) \ DOI: 10.1103/PhysRevLett.122.158301
Pamela L. Toledo, Juha M. Torkko, Andreas Müller, Carolin Wegbrod, Anke Sönmez, Michele Solimena, Mario R. Ermácora\ ICA512 RESP18 homology domain is a protein-condensing factor and insulin fibrillation inhibitor\ Journal of Biological Chemistry 294(21):8564–8576 (Apr 13, 2019) \ DOI: 10.1074/jbc.ra119.007607
Shengyu Shi, Hao Zhang, Jinping Qu, Gang Jin, Robert Kuschmierz, Jürgen Czarske\ Measurement uncertainty propagation in spindle error separation techniques - Investigation by means of stochastic spectral method\ International Journal of Machine Tools and Manufacture 141:36–45 (Apr 12, 2019) \ DOI: 10.1016/j.ijmachtools.2019.03.006
Vasiliki Tsata, Volker Kroehne, Susanne Reinhardt, Ali El-Armouche, Michael Brand, Michael Wagner, Michell M. Reimer\ Electrophysiological Properties of Adult Zebrafish Oligodendrocyte Progenitor Cells\ Front. Cell. Neurosci. 13 (Apr 12, 2019) \ DOI: 10.3389/fncel.2019.00102
Ingo Nitschke, Sebastian Reuther, Axel Voigt\ Hydrodynamic interactions in polar liquid crystals on evolving surfaces\ Phys. Rev. Fluids, (Apr 8, 2019) \ DOI: 10.1103/PhysRevFluids.4.044002
Jean-Michel Romano, Ralf Helbig, Fotis Fraggelakis, Antonio Garcia-Giron, Carsten Werner, Rainer Kling, Stefan Dimov\ Springtail-Inspired Triangular Laser-Induced Surface Textures on Metals Using MHz Ultrashort Pulses\ Journal of Micro and Nano-Manufacturing 7(2) (Apr 5, 2019) \ DOI: 10.1115/1.4043417
Marc Gentzel, Mercedes Pardo, Sivaraman Subramaniam, A. Francis Stewart, Jyoti S. Choudhary\ Proteomic navigation using proximity-labeling\ Methods 164-165:67–72 (Apr 4, 2019) \ DOI: 10.1016/j.ymeth.2019.03.028
Lara Marrone, Hannes C. A. Drexler, Jie Wang, Priyanka Tripathi, Tania Distler, Patrick Heisterkamp, Eric Nathaniel Anderson, Sukhleen Kour, Anastasia Moraiti, Shovamayee Maharana, Rajat Bhatnagar, T. Grant Belgard, Vadreenath Tripathy, Norman Kalmbach, Zohreh Hosseinzadeh, Valeria Crippa, Masin Abo-Rady, Florian Wegner, Angelo Poletti, Dirk Troost, Eleonora Aronica, Volker Busskamp, Joachim Weis, Udai Bhan Pandey, Anthony A. Hyman, Simon Alberti, Anand Goswami, Jared Sterneckert\ FUS pathology in ALS is linked to alterations in multiple ALS-associated proteins and rescued by drugs stimulating autophagy\ Acta Neuropathol 138(1):67–84 (Apr 1, 2019) \ DOI: 10.1007/s00401-019-01998-x
Michael Nestler, Ingo Nitschke, Axel Voigt\ A finite element approach for vector- and tensor-valued surface PDEs\ Journal of Computational Physics 389:48–61 (Apr 1, 2019) \ DOI: 10.1016/j.jcp.2019.03.006
Stefan Münster, Akanksha Jain, Alexander Mietke, Anastasios Pavlopoulos, Stephan W. Grill, Pavel Tomancak\ Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects\ Nature, (Mar 27, 2019) \ DOI: 10.1038/s41586-019-1044-3
Evelyn J. Sauter, Lisa K. Kutsche, Simon D. Klapper, Volker Busskamp\ Induced Neurons for the Study of Neurodegenerative and Neurodevelopmental Disorders\ Methods in Molecular Biology 101–121 (Mar 21, 2019) \ DOI: 10.1007/978-1-4939-9080-1_9
Stephan Daetwyler, Ulrik Günther, Carl D. Modes, Kyle Harrington, Jan Huisken\ Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish\ Development, 146(6): dev173757 (Mar 21, 2019) \ DOI: 10.1242/dev.173757
Katrin Philipp, Jürgen Czarske\ Axial scanning employing tunable lenses: Fourier optics based system design\ OSA Continuum 2(4):1318 (Mar 19, 2019) \ DOI: 10.1364/osac.2.001318
Annett Linge, Stefan Schmidt, Fabian Lohaus, Constanze Krenn, Anna Bandurska-Luque, Ivan Platzek, Cläre von Neubeck, Steffen Appold, Alexander Nowak, Volker Gudziol, Frank Buchholz, Gustavo B. Baretton, Michael Baumann, Steffen Löck, Mechthild Krause\ Independent validation of tumour volume, cancer stem cell markers and hypoxia-associated gene expressions for HNSCC after primary radiochemotherapy\ Clinical and Translational Radiation Oncology 16:40–47 (Mar 18, 2019) \ DOI: 10.1016/j.ctro.2019.03.002
Amna Khamis, Mickaël Canouil, Afshan Siddiq, Hutokshi Crouch, Mario Falchi, Manon von Bulow, Florian Ehehalt, Lorella Marselli, Marius Distler, Daniela Richter, Jürgen Weitz, Krister Bokvist, Ioannis Xenarios, Bernard Thorens, Anke M. Schulte, Mark Ibberson, Amelie Bonnefond, Piero Marchetti, Michele Solimena, Philippe Froguel\ Laser capture microdissection of human pancreatic islets reveals novel eQTLs associated with type 2 diabetes\ Molecular Metabolism 24:98–107 (Mar 18, 2019) \ DOI: 10.1016/j.molmet.2019.03.004
Shilpi Singh, Édgar Roldán, Izaak Neri, Ivan M. Khaymovich, Dmitry S. Golubev, Ville F. Maisi, Joonas T. Peltonen, Frank Jülicher, Jukka P. Pekola\ Extreme reductions of entropy in an electronic double dot\ Phys. Rev. B 99(11), 115422 (Mar 18, 2019) \ DOI: 10.1103/physrevb.99.115422
Jia Yin, Wentao Zheng, Yunsheng Gao, Chanjuan Jiang, Hongbo Shi, Xiaotong Diao, Shanshan Li, Hanna Chen, Hailong Wang, Ruijuan Li, Aiying Li, Liqiu Xia, Yulong Yin, A. Francis Stewart, Youming Zhang, Jun Fu\ Single-Stranded DNA-Binding Protein and Exogenous RecBCD Inhibitors Enhance Phage-Derived Homologous Recombination in Pseudomonas\ iScience 14:1–14 (Mar 12, 2019) \ DOI: 10.1016/j.isci.2019.03.007
Florian Lemke, Yasmina Frey, Binal P Bruno, Katrin Philipp, Nektarios Koukourakis, Jürgen Czarske, Ulrike Wallrabe, Matthias C Wapler\ Multiphysics simulation of the aspherical deformation of piezo-glass membrane lenses including hysteresis, fabrication and nonlinear effects\ Smart Mater. Struct. 28(5):055024 (Mar 11, 2019) \ DOI: 10.1088/1361-665x/ab0eb3
Steffen Löck, Annett Linge, Annekatrin Seidlitz, Anna Bandurska-Luque, Alexander Nowak, Volker Gudziol, Frank Buchholz, Daniela E. Aust, Gustavo B. Baretton, Klaus Zöphel, Jörg Steinbach, Jörg Kotzerke, Jens Overgaard, Daniel Zips, Mechthild Krause, Michael Baumann, Esther G.C. Troost\ Repeat FMISO-PET imaging weakly correlates with hypoxia-associated gene expressions for locally advanced HNSCC treated by primary radiochemotherapy\ Radiotherapy and Oncology 135:43–50 (Mar 9, 2019) \ DOI: 10.1016/j.radonc.2019.02.020
Felix Schmieder, Rouhollah Habibey, Lars Büttner, Jürgen W. Czarske, Volker Busskamp\ Optogenetic investigation of in vitro human iPSC-derived neuronal networks (Conference Presentation)\ Optogenetics and Optical Manipulation 2019 (Mar 7, 2019) \ DOI: 10.1117/12.2507855
Kathleen R Bashant, Arlette Vassallo, Christoph Herold, Reinhard Berner, Leonhard Menschner, Julien Subburayalu, Mariana J Kaplan, Charlotte Summers, Jochen Guck, Edwin R Chilvers, Nicole Toepfner\ Real-time deformability cytometry reveals sequential contraction and expansion during neutrophil priming\ Journal of Leukocyte Biology 105(6):1143–1153 (Mar 6, 2019) \ DOI: 10.1002/jlb.ma0718-295rr
Rupam Choudhury, Sukhdeep Singh, Senthil Arumugam, Assen Roguev, A. Francis Stewart\ The Set1 complex is dimeric and acts with Jhd2 demethylation to convey symmetrical H3K4 trimethylation\ Genes Dev. 33(9-10):550–564 (Mar 6, 2019) \ DOI: 10.1101/gad.322222.118
Chan-Fei Su, Holger Merlitz, Fabrice Thalmann, Carlos Marques, Jens-Uwe Sommer\ Coarse-Grained Model of Oxidized Membranes and Their Interactions with Nanoparticles of Various Degrees of Hydrophobicity\ J. Phys. Chem. C 123(11):6839–6848 (Mar 4, 2019) \ DOI: 10.1021/acs.jpcc.8b11909
Julian Lich, Tino Wollmann, Angelos Filippatos, Maik Gude, Robert Kuschmierz, Jürgen Czarske\ Optical strain measurements on fast moving fiber reinforced polymer rotors using diffraction gratings\ tm - Technisches Messen 86(3):175–183 (Mar 2, 2019) \ DOI: 10.1515/teme-2019-0010
Elias Scharf, Robert Kuschmierz, Jürgen Czarske\ Holographic lensless fiber endoscope with needle size using self-calibration\ tm - Technisches Messen 86(3):144–150 (Feb 28, 2019) \ DOI: 10.1515/teme-2018-0087
Ann Mukhortava, Matthias Pöge, Maj Svea Grieb, Aleksandra Nivina, Celine Loot, Didier Mazel, Michael Schlierf\ Structural heterogeneity of attC integron recombination sites revealed by optical tweezers\ Nucleic Acids Research, Volume 47, Issue 4 (Feb 28, 2019) \ DOI: 10.1093/nar/gky12580
Florian Noack, Abhijeet Pataskar, Martin Schneider, Frank Buchholz, Vijay K Tiwari, Federico Calegari\ Assessment and site-specific manipulation of DNA (hydroxy-)methylation during mouse corticogenesis\ Life Sci. Alliance 2(2):e201900331 (Feb 27, 2019) \ DOI: 10.26508/lsa.201900331
Malte Schröder, Xiaozhu Zhang, Justine Wolter, Marc Timme\ Dynamic Perturbation Spreading in Networks\ IEEE (Feb 26, 2019) \ DOI: 10.1109/TNSE.2019.2901582
Jean-Michel Romano, Rajib Ahmed, Antonio Garcia-Giron, Pavel Penchev, Haider Butt, Olivier Delléa, Melissa Sikosana, Ralf Helbig, Carsten Werner, Stefan Dimov\ Subwavelength Direct Laser Nanopatterning Via Microparticle Arrays for Functionalizing Metallic Surfaces\ Journal of Micro and Nano-Manufacturing 7(1) (Feb 25, 2019) \ DOI: 10.1115/1.4042964
Jürgen Czarske\ Themenheft: Mechatronische Lasermesssysteme\ tm - Technisches Messen 86(3):119–120 (Feb 23, 2019) \ DOI: 10.1515/teme-2019-0015
Uwe Freudenberg, Passant Atallah, Yanuar Dwi Putra Limasale, Carsten Werner\ Charge-tuning of glycosaminoglycan-based hydrogels to program cytokine sequestration\ Faraday Discuss. 219, 244–251 (Feb 22, 2019) \ DOI: 10.1039/C9FD00016J
Jan Kožusznik, Petr Bainar, Jana Klímová, Michal Krumnikl, Pavel Moravec, Václav Svatoň, Pavel Tomančák\ SPIM workflow manager for HPC\ Bioinformatics 35(19):3875–3876 (Feb 22, 2019) \ DOI: 10.1093/bioinformatics/btz140
P. Welzel, B. Newland, C. Werner\ Session 3: Biomaterials - Natural Polymers\ Biomedical Engineering / Biomedizinische Technik 64(s1):25–29 (Feb 22, 2019) \ DOI: 10.1515/bmt-2019-7003
Stefanie Tietze, Martin Kräter, Angela Jacobi, Anna Taubenberger, Maik Herbig, Rebekka Wehner, Marc Schmitz, Oliver Otto, Catrin List, Berna Kaya, Manja Wobus, Martin Bornhäuser, Jochen Guck\ Spheroid Culture of Mesenchymal Stromal Cells Results in Morphorheological Properties Appropriate for Improved Microcirculation\ Advanced Science 6(8) (Feb 20, 2019) \ DOI: 10.1002/advs.201802104
Claude N. Holenstein, Aron Horvath, Barbara Schär, Angelina D. Schoenenberger, Maja Bollhalder, Nils Goedecke, Guido Bartalena, Oliver Otto, Maik Herbig, Jochen Guck, Daniel A. Müller, Jess G. Snedeker, Unai Silvan\ The relationship between metastatic potential and in vitro mechanical properties of osteosarcoma cells\ MBoC 30(7):887–898 (Feb 20, 2019) \ DOI: 10.1091/mbc.e18-08-0545
K. Venkatesan Iyer, Romina Piscitello-Gómez, Joris Paijmans, Frank Jülicher, Suzanne Eaton\ Epithelial Viscoelasticity is Regulated by Mechanosensitive E-cadherin Turnover\ Current Biology 29 (4), 578–591.e5, (Feb 18, 2019) \ DOI: 10.1016/j.cub.2019.01.021
Leonard Schärfen, Michael Schlierf\ Real-time monitoring of protein-induced DNA conformational changes using single-molecule FRET\ Methods 169:11–20 (Feb 15, 2019) \ DOI: 10.1016/j.ymeth.2019.02.011
Andrea J Korecki, Jack W Hickmott, Siu Ling Lam, Lisa Dreolini, Anthony Mathelier, Oliver Baker, Claudia Kuehne, Russell J Bonaguro, Jillian Smith, Chin-Vern Tan, Michelle Zhou, Daniel Goldowitz, Jan M Deussing, A Francis Stewart, Wyeth W Wasserman, Robert A Holt, Elizabeth M Simpson\ Twenty-Seven Tamoxifen-Inducible iCre-Driver Mouse Strains for Eye and Brain, Including Seventeen Carrying a New Inducible-First Constitutive-Ready Allele\ Genetics 211(4):1155–1177 (Feb 15, 2019) \ DOI: 10.1534/genetics.119.301984
Serena Carra, Simon Alberti, Justin L.P. Benesch, Wilbert Boelens, Johannes Buchner, John A. Carver, Ciro Cecconi, Heath Ecroyd, Nikolai Gusev, Lawrence E. Hightower, Rachel E. Klevit, Hyun O. Lee, Krzysztof Liberek, Brent Lockwood, Angelo Poletti, Vincent Timmerman, Melinda E. Toth, Elizabeth Vierling, Tangchun Wu, Robert M. Tanguay\ Small heat shock proteins: multifaceted proteins with important implications for life\ Cell Stress and Chaperones 24(2):295–308 (Feb 13, 2019) \ DOI: 10.1007/s12192-019-00979-z
Hilal Celikkaya, Mehmet Ilyas Cosacak, Christos Papadimitriou, Stanislava Popova, Prabesh Bhattarai, Srijeeta Nag Biswas, Tohid Siddiqui, Sabrina Wistorf, Isabel Nevado-Alcalde, Lisa Naumann, Violeta Mashkaryan, Kerstin Brandt, Uwe Freudenberg, Carsten Werner, Caghan Kizil\ GATA3 Promotes the Neural Progenitor State but Not Neurogenesis in 3D Traumatic Injury Model of Primary Human Cortical Astrocytes\ Front. Cell. Neurosci. 13 (Feb 12, 2019) \ DOI: 10.3389/fncel.2019.00023
Christoph A Weber, David Zwicker, Frank Jülicher, Chiu Fan Lee\ Physics of active emulsions\ Rep. Prog. Phys. 82(6):064601 (Feb 7, 2019) \ DOI: 10.1088/1361-6633/ab052b
Ivan Ivanov, Rafael B. Lira, T.‐Y. Dora Tang, Titus Franzmann, Adam Klosin, Lucas Caire da Silva, Anthony Hyman, Katharina Landfester, Reinhard Lipowsky, Kai Sundmacher, Rumiana Dimova\ Directed Growth of Biomimetic Microcompartments\ Adv. Biosys. 3(6) (Feb 6, 2019) \ DOI: 10.1002/adbi.201800314
Friederike Bothe, Anne-Kathrin Deubel, Eliane Hesse, Benedict Lotz, Jürgen Groll, Carsten Werner, Wiltrud Richter, Sebastien Hagmann\ Treatment of Focal Cartilage Defects in Minipigs with Zonal Chondrocyte/Mesenchymal Progenitor Cell Constructs\ IJMS 20(3):653 (Feb 5, 2019) \ DOI: 10.3390/ijms20030653
Ghada Hassan, Nina Forsman, Xing Wan, Leena Keurulainen, Luis M. Bimbo, Leena-Sisko Johansson, Nina Sipari, Jari Yli-Kauhaluoma, Ralf Zimmermann, Susanne Stehl, Carsten Werner, Per E. J. Saris, Monika Österberg, Vânia M. Moreira\ Dehydroabietylamine-Based Cellulose Nanofibril Films: A New Class of Sustainable Biomaterials for Highly Efficient, Broad-Spectrum Antimicrobial Effects\ ACS Sustainable Chem. Eng. 7(5):5002–5009 (Feb 4, 2019) \ DOI: 10.1021/acssuschemeng.8b05658
Mirna Bilus, Maja Semanjski, Marko Mocibob, Igor Zivkovic, Nevena Cvetesic, Dan S. Tawfik, Agnes Toth-Petroczy, Boris Macek, Ita Gruic-Sovulj\ On the Mechanism and Origin of Isoleucyl-tRNA Synthetase Editing against Norvaline\ Journal of Molecular Biology 431(6):1284–1297 (Feb 1, 2019) \ DOI: 10.1016/j.jmb.2019.01.029
Michal Grzybek, Alessandra Palladini, Vasileia I. Alexaki, Michal A. Surma, Kai Simons, Triantafyllos Chavakis, Christian Klose, Ünal Coskun\ Comprehensive and quantitative analysis of white and brown adipose tissue by shotgun lipidomics\ Molecular Metabolism 22:12–20 (Jan 30, 2019) \ DOI: 10.1016/j.molmet.2019.01.009
Michael Schlierf, Ganggang Wang, Xiaojiang S Chen, Taekjip Ha\ Hexameric helicase G40P unwinds DNA in single base pair steps\ eLife 8 (Jan 28, 2019) \ DOI: 10.7554/elife.42001
Kerstin Klinkert, Nicolas Levernier, Peter Gross, Christian Gentili, Lukas von Tobel, Marie Pierron, Coralie Busso, Sarah Herrman, Stephan W Grill, Karsten Kruse, Pierre Gönczy\ Aurora A depletion reveals centrosome-independent polarization mechanism in Caenorhabditis elegans\ eLife (Jan 25, 2019) \ DOI: 10.7554/eLife.44552
Martin Hahmann, Claudio Hartmann, Lars Kegel, Wolfgang Lehner\ Large-Scale Time Series Analytics\ Datenbank Spektrum 19(1):17–29 (Jan 21, 2019) \ DOI: 10.1007/s13222-018-00304-5
Kassiani Skouloudaki, Dimitrios K. Papadopoulos, Pavel Tomancak, Elisabeth Knust\ The apical protein Apnoia interacts with Crumbs to regulate tracheal growth and inflation\ PLoS Genet 15(1):e1007852 (Jan 15, 2019) \ DOI: 10.1371/journal.pgen.1007852
Dimitrios K. Papadopoulos, Kassiani Skouloudaki, Ylva Engström, Lars Terenius, Rudolf Rigler, Christoph Zechner, Vladana Vukojević, Pavel Tomancak\ Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch\ Development 146(12) (Jan 14, 2019) \ DOI: 10.1242/dev.168179
Felix Greiffenhagen, Johannes Peterleithner, Jakob Woisetschläger, Andreas Fischer, Johannes Gürtler, Jürgen Czarske\ Discussion of laser interferometric vibrometry for the determination of heat release fluctuations in an unconfined swirl-stabilized flame\ Combustion and Flame 201:315–327 (Jan 11, 2019) \ DOI: 10.1016/j.combustflame.2018.12.019
Giorgio Fracasso, Yvonne Körner, David Thomas T Gonzales, T-Y. Dora Tang\ In vitro gene expression and detergent-free reconstitution of active proteorhodopsin in lipid vesicles\ Exp Biol Med (Maywood) 244(4):314–322 (Jan 11, 2019) \ DOI: 10.1177/1535370218820290
Christian Kupsch, David Weik, Lukas Feierabend, Richard Nauber, Lars Buttner, Jurgen Czarske\ Vector Flow Imaging of a Highly Laden Suspension in a Zinc-Air Flow Battery Model\ IEEE Trans. Ultrason., Ferroelect., Freq. Contr. 66(4):761–771 (Jan 10, 2019) \ DOI: 10.1109/tuffc.2019.2891514
Sebastian Dunst, Pavel Tomancak\ Imaging Flies by Fluorescence Microscopy: Principles, Technologies, and Applications\ Genetics 211(1):15–34 (Jan 9, 2019) \ DOI: 10.1534/genetics.118.300227
Stefan Rothe, Hannes Radner, Nektarios Koukourakis, Jürgen W. Czarske\ Transmission Matrix Measurement of Multimode Optical Fibers by Mode-Selective Excitation Using One Spatial Light Modulator\ Applied Sciences 9(1):195 (Jan 9, 2019) \ DOI: 10.3390/app9010195
Titus M. Franzmann, Simon Alberti\ Protein Phase Separation as a Stress Survival Strategy\ Cold Spring Harb Perspect Biol 11(6):a034058 (Jan 7, 2019) \ DOI: 10.1101/cshperspect.a034058
Albert Thommen, Steffen Werner, Olga Frank, Jenny Philipp, Oskar Knittelfelder, Yihui Quek, Karim Fahmy, Andrej Shevchenko, Benjamin M Friedrich, Frank Jülicher, Jochen C Rink\ Body size-dependent energy storage causes Kleiber’s law scaling of the metabolic rate in planarians\ eLife 8:e38187 (Jan 4, 2019) \ DOI: 10.7554/eLife.38187
Claudio Hartmann, Franziska Ressel, Martin Hahmann, Dirk Habich, Wolfgang Lehner\ CSAR: the cross-sectional autoregression model for short and long-range forecasting\ Int J Data Sci Anal 8(2):165–181 (Jan 3, 2019) \ DOI: 10.1007/s41060-018-00169-7
2018
4 publication(s) listed
Alexander Mietke, Frank Jülicher, Ivo F. Sbalzarini\ Self-organized shape dynamics of active surfaces\ Proc. Natl. Acad. Sci. U.S.A. 116(1):29–34 (Dec 20, 2018) \ DOI: 10.1073/pnas.1810896115
Louise M. Jawerth, Mahdiye Ijavi, Martine Ruer, Shambaditya Saha, Marcus Jahnel, Anthony A. Hyman, Frank Jülicher, Elisabeth Fischer-Friedrich\ Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps\ Phys. Rev. Lett. 121, 258101 (Dec 18, 2018) \ DOI: 10.1103/PhysRevLett.121.258101
- Elisabeth Fischer-Friedrich
- Marcus Jahnel
- Anthony A. Hyman
- Frank Jülicher
Peter Gross, K. Vijay Kumar, Nathan W. Goehring, Justin S. Bois, Carsten Hoege, Frank Jülicher, Stephan W. Grill\ Guiding self-organized pattern formation in cell polarity establishment\ Nature Physics 15, 293–300 (Dec 3, 2018) \ DOI: 10.1038/s41567-018-0358-7
Ralf Zimmermann, Judith Delius, Jens Friedrichs, Susanne Stehl, Thomas Hofmann, Christian Hannig, Melanie Rehage, Carsten Werner, Matthias Hannig\ Impact of oral astringent stimuli on surface charge and morphology of the protein-rich pellicle at the tooth–saliva interphase\ Colloids and Surfaces B: Biointerfaces 174:451–458 (Nov 16, 2018) \ DOI: 10.1016/j.colsurfb.2018.11.028