Publications

Source: https://physics-of-life.tu-dresden.de/team/pol-groups/yang/publications Parent: https://physics-of-life.tu-dresden.de/team/pol-groups/yang

Easun Arunachalam*, William Ireland*, Xingbo Yang*, and Daniel Needleman\ Dissecting flux balances to measure energetic costs in cell biology: techniques and challenges.\ Annual Review of Condensed Matter Physics 14 (2023)\ *equal contribution

Venturas, Marta, Jaimin S. Shah, Xingbo Yang, Tim H. Sanchez, William Conway, Denny Sakkas, and Dan J. Needleman\ Metabolic state of human blastocysts measured by fluorescence lifetime imaging microscopy.\ Human Reproduction 37, no. 3 (2022): 411–427

Venturas, Marta, Xingbo Yang, Kishlay Kumar, Dagan Wells, Catherine Racowsky, and Daniel J. Needleman\ Metabolic imaging of human cumulus cells reveals associations among metabolic profiles of cumulus cells, patient clinical factors, and oocyte maturity.\ Fertility and sterility 116, no. 6 (2021): 1651–1662

Xingbo Yang, Gloria Ha, and Daniel J. Needleman\ A coarse-grained NADH redox model enables inference of subcellular metabolic fluxes from fluorescence lifetime imaging.\ Elife 10 (2021): e73808

Xingbo Yang*, Matthias Heinemann, Jonathon Howard, Greg Huber, Srividya Iyer-Biswas, Guillaume Le Treut, Michael Lynch, Kristi L. Montooth, Daniel J. Needleman, Simone Pigolotti, Jonathan Rodenfels, Pierre Ronceray, Sadasivan Shankar, Iman Tavassoly, Shashi Thutupalli, Denis V. Titov, Jin Wang, and Peter J. Foster*\ Physical bioenergetics: Energy fluxes, budgets, and constraints in cells.\ Proceedings of the National Academy of Sciences 118, no. 26 (2021): e2026786118\ *equal contribution

Shams, Daniel P., Xingbo Yang, Pankaj Mehta, and David J. Schwab\ Spatial gradient sensing and chemotaxis via excitability in Dictyostelium discoideum.\ Physical Review E 101, no. 6 (2020): 062410

Sanchez, Tim, Marta Venturas, S. Ali Aghvami, Xingbo Yang, Seth Fraden, Denny Sakkas, and Daniel J. Needleman\ Combined noninvasive metabolic and spindle imaging as potential tools for embryo and oocyte assessment.\ Human Reproduction 34, no. 12 (2019): 2349–2361

Kale, Girish R., Xingbo Yang, Jean-Marc Philippe, Madhav Mani, Pierre-François Lenne, and Thomas Lecuit\ Distinct contributions of tensile and shear stress on E-cadherin levels during morphogenesis.\ Nature communications 9, no. 1 (2018): 5021

Xingbo Yang, Dapeng Bi, Michael Czajkowski, Matthias Merkel, M. Lisa Manning, and M. Cristina Marchetti\ Correlating cell shape and cellular stress in motile confluent tissues.\ Proceedings of the National Academy of Sciences 114, no. 48 (2017): 12663–12668

Xingbo Yang*, Kelson J. Kaj*, David J. Schwab, and Eva-Maria S. Collins\ Coordination of size-control, reproduction and generational memory in freshwater planarians.\ Physical biology 14, no. 3 (2017): 036003\ *equal contribution

Lemon, David J., Xingbo Yang, Pragya Srivastava, Yan-Yeung Luk, and Anthony G. Garza\ Polymertropism of rod-shaped bacteria: movement along aligned polysaccharide fibers.\ Scientific reports 7, no. 1 (2017): 1–13

Bi, Dapeng, Xingbo Yang, M. Cristina Marchetti, and M. Lisa Manning\ Motility-driven glass and jamming transitions in biological tissues.\ Physical Review X 6, no. 2 (2016): 021011

Xingbo Yang, and M. Cristina Marchetti\ Hydrodynamics of turning flocks.\ Physical review letters 115, no. 25 (2015): 258101

Xingbo Yang, M. Lisa Manning, and M. Cristina Marchetti\ Aggregation and segregation of confined active particles.\ Soft matter 10, no. 34 (2014): 6477-6484

Xingbo Yang, Davide Marenduzzo, and M. Cristina Marchetti\ Spiral and never-settling patterns in active systems.\ Physical Review E 89, no. 1 (2014): 012711