Metadata
Title
Peter Baker
Category
general
UUID
0b79c23076294de2b7cfa285e9562992
Source URL
https://about.uq.edu.au/experts/2181
Parent URL
https://about.uq.edu.au/experts/2707
Crawl Time
2026-03-11T07:24:30+00:00
Rendered Raw Markdown 
# Peter Baker

**Source**: https://about.uq.edu.au/experts/2181
**Parent**: https://about.uq.edu.au/experts/2707

Dr

# Peter Baker

Email:
:   [p.baker1@uq.edu.au](mailto:p.baker1@uq.edu.au)

## Positions

Honorary Associate Professor
:   Queensland Alliance for Agriculture and Food Innovation

## Overview

### Background

**Dr Peter Baker is an Honorary Associate Professor at the Queensland Alliance for Agriculture and Food Innovation**

From 2021-2023, Peter was an Honorary Senior Lecturer at the School of Public Health, University of Queensland. For twelve years until the end of 2020, he was a Senior Lecturer in Biostatistics at the School of Public Health and a senior statistical collaborator, advisor and consultant to several research projects in the Faculty of Medicine, School of Public Health.

With fourty years experience as a statistical consultant and researcher, Peter has a passion for biometrics in agricultural research and biostatistics applied to public health and medical research. He also champions reproducible research and reporting and to this end has developed R and Make software to aid the workflow of data analysts in any field. As a statistical consultant and collaborator, he has contributed to many agricultural, genetic, public health and medical research projects. His contribution has ranged from advice on standard statistical approaches to the application of novel methods to improve statistical analysis or the development of new statistical methodology to fill a gap in the knowledge.

Peter's current research interests:

- efficient statistical computing using R, Make, Git and related software for the workflow of data analysis,
- reproducible research and reporting using R, Markdown, Quarto and Sweave,
- tailoring R functions and developing bespoke packages for specific statistical analyses, and
- applied statistlcal research in novel methods for epidemiological and medial research, including
  - graphical models for multivariate data in epidemiology,
  - statistical methods for modelling trajectories of alcohol consumption in youths,
  - propensity score analysis to adjust for selection bias in observational studies, and
  - Bayesian methods for epidemiological and medical MCMC studies.

Dr Baker is an Accredited Statistician (ASTAT) with the Statistical Society of Australia (see [SSAI\_Accreditation](http://www.statsoc.org.au/careers-accreditation/professional-accreditation/))

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### Availability

Dr Peter Baker is:
:   Available for supervision

### Fields of research

[Agricultural, Veterinary and Food Sciences](https://about.uq.edu.au/experts/search?research-field=4767)
[Biomedical and Clinical Sciences](https://about.uq.edu.au/experts/search?research-field=4760)
[Biostatistics](https://about.uq.edu.au/experts/search?research-field=6122)
[Crop and pasture production](https://about.uq.edu.au/experts/search?research-field=4894)
[Health Sciences](https://about.uq.edu.au/experts/search?research-field=4759)
[Mathematical Sciences](https://about.uq.edu.au/experts/search?research-field=4768)
[Statistics](https://about.uq.edu.au/experts/search?research-field=4885)

### Qualifications

- Bachelor (Honours) of Science (Advanced), University of Adelaide
- Masters (Coursework), University of New South Wales
- Doctor of Philosophy, Queensland University of Technology

### Research impacts

Peter is a highly experienced statistical consultant and researcher who worked at CSIRO Mathematics, Informatics and Statistics for 20 years before joining the School of Population Health at the University of Queensland. Prior to this he was employed as a statistical consultant in enviironmental monitoring at the Electricity Commision of NSW, sports science at Cumberland College of Health Sciences, and agricultural research at NSW Agriculture. During his time at CSIRO, he worked in a range of areas including agricultural research, bioinformatics and quantitative genetics. Highlights: developed novel Bayesian methods for assessing marker dosage in sugarcane and other polyploids and applied false discovery rate methods to QTL analysis and microarrays.

In addition to collaborating with a range of applied scientists to advance scientific knowledge by employing standard and cutting-edge statistical methods, several projects have had practical significance to industry including timely alerts to graziers when drops in temperature are dangerous for lambing, improved soil moisture estimation for cotton production and enhancing quantitative methods for sugarcane breeding. Recent collaborative work has informed public policy on drink safe precincts and alcohol related problems, effectiveness of mosquito nets and the effect of sunscreen to prevent skin ageing.

When it can improve research outcomes, Peter is keen to apply new statistical methods to agricultural research, epidemiology, health and medical studies in order to extract the maximum information from study data. He is also an expert in, and advocate for, reproducible research and efficient statistical computing using the R statistical and graphics system.

**R Clinics and Short Course*s***

- Please contact Peter if you would like a workshop or Introductory to Advanced R Course tailored to your needs.

**Student Projects**

- Developing or contributing to R packages for various aspects of the workflow of data analysis projects like data wrangling, cleaning, validation and reproducible reporting,
- Statistical and Graphical Models for crop modelling, agricultural research, and epidemiological and medical studies.

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## Works

[Search Professor Peter Baker’s works on UQ eSpace](http://espace.library.uq.edu.au/list/author_id/79311)

[All
(76)](https://about.uq.edu.au/experts-publication/2181/all)
[Book
(1)](https://about.uq.edu.au/experts-publication/2181/4747)
[Journal Article
(60)](https://about.uq.edu.au/experts-publication/2181/4748)
[Conference Publication
(14)](https://about.uq.edu.au/experts-publication/2181/4751)
[Book Chapter
(1)](https://about.uq.edu.au/experts-publication/2181/4752)

2025

Journal Article

##### Enhancing green bean crop maturity and yield prediction by harnessing the power of statistical analysis, crop records and weather data

Mortlock, Miranda Y., Carey, David, Murray, Hamish, Baker, Peter J. and Corry, Paul G. (2025). Enhancing green bean crop maturity and yield prediction by harnessing the power of statistical analysis, crop records and weather data. PLoS One, 20 (3) e0306266, 1-20. doi: 10.1371/journal.pone.0306266

[Enhancing green bean crop maturity and yield prediction by harnessing the power of statistical analysis, crop records and weather data](https://espace.library.uq.edu.au/view/UQ:390d1ff)

2024

Journal Article

##### Using latent variable modelling to identify etiological heterogeneity in preterm delivery

Betts, Kim Steven, Alati, Rosa and Baker, Peter (2024). Using latent variable modelling to identify etiological heterogeneity in preterm delivery. Journal of Paediatrics and Child Health, 60 (11), 741-748. doi: 10.1111/jpc.16660

[Using latent variable modelling to identify etiological heterogeneity in preterm delivery](https://espace.library.uq.edu.au/view/UQ:2536bd6)

2023

Journal Article

##### Differences in temperature responses among phenological processes in diverse Ethiopian sorghum germplasm can affect their specific adaptation to environmental conditions

Tirfessa, Alemu, McLean, Greg, Baker, Peter, Mortlock, Miranda, Hammer, Graeme and van Oosterom, Erik (2023). Differences in temperature responses among phenological processes in diverse Ethiopian sorghum germplasm can affect their specific adaptation to environmental conditions. Annals of Botany, 131 (4), 601-611. doi: 10.1093/aob/mcad011

[Differences in temperature responses among phenological processes in diverse Ethiopian sorghum germplasm can affect their specific adaptation to environmental conditions](https://espace.library.uq.edu.au/view/UQ:097c544)

2023

Journal Article

##### Secular trends of birthweight in a population of live-born, singletons, without congenital anomalies in Queensland, Australia

Vilcins, Dwan, Baker, Peter, Jagals, Paul and Sly, Peter D. (2023). Secular trends of birthweight in a population of live-born, singletons, without congenital anomalies in Queensland, Australia. Journal of Public Health, 32 (4), 701-711. doi: 10.1007/s10389-023-01841-4

[Secular trends of birthweight in a population of live-born, singletons, without congenital anomalies in Queensland, Australia](https://espace.library.uq.edu.au/view/UQ:1a24a7e)

2022

Journal Article

##### Tobacco Harm Reduction with Vaporised Nicotine (THRiVe): a feasibility trial of nicotine vaping products for smoking cessation among people living with HIV

Edwards, Stephanie, Puljević, Cheneal, Dean, Judith A., Gilks, Charles, Boyd, Mark A., Baker, Peter, Watts, Peter, Howard, Chris and Gartner, Coral E. (2022). Tobacco Harm Reduction with Vaporised Nicotine (THRiVe): a feasibility trial of nicotine vaping products for smoking cessation among people living with HIV. AIDS and Behavior, 27 (2), 1-10. doi: 10.1007/s10461-022-03797-0

[Tobacco Harm Reduction with Vaporised Nicotine (THRiVe): a feasibility trial of nicotine vaping products for smoking cessation among people living with HIV](https://espace.library.uq.edu.au/view/UQ:20a1435)

2021

Journal Article

##### The association of ambient temperature with extremely preterm births

Vilcins, Dwan, Baker, Peter, Jagals, Paul and Sly, Peter D. (2021). The association of ambient temperature with extremely preterm births. Maternal and Child Health Journal, 25 (10), 1638-1645. doi: 10.1007/s10995-021-03203-6

[The association of ambient temperature with extremely preterm births](https://espace.library.uq.edu.au/view/UQ:76defc9)

2021

Journal Article

##### Identifying the predictors of Covid-19 infection outcomes and development of prediction models

Ansari, Rashid M. and Baker, Peter (2021). Identifying the predictors of Covid-19 infection outcomes and development of prediction models. Journal of Infection and Public Health, 14 (6), 751-756. doi: 10.1016/j.jiph.2021.03.006

[Identifying the predictors of Covid-19 infection outcomes and development of prediction models](https://espace.library.uq.edu.au/view/UQ:4a99f63)

2020

Journal Article

##### The association of fractional cover, foliage projective cover and biodiversity with birthweight

Vilcins, Dwan, Scarth, Peter, Sly, Peter D., Jagals, Paul, Knibbs, Luke and Baker, Peter (2020). The association of fractional cover, foliage projective cover and biodiversity with birthweight. Science of The Total Environment, 763 143051, 143051. doi: 10.1016/j.scitotenv.2020.143051

[The association of fractional cover, foliage projective cover and biodiversity with birthweight](https://espace.library.uq.edu.au/view/UQ:2db56a5)

2020

Journal Article

##### The double burden of malnutrition in Vietnamese school-aged children and adolescents: a rapid shift over a decade in Ho Chi Minh City

Mai, Thi My Thien, Pham, Ngoc Oanh, Tran, Thi Minh Hanh, Baker, Peter, Gallegos, Danielle, Do, Thi Ngoc Diep, van der Pols, Jolieke C. and Jordan, Susan J. (2020). The double burden of malnutrition in Vietnamese school-aged children and adolescents: a rapid shift over a decade in Ho Chi Minh City. European Journal of Clinical Nutrition, 74 (10), 1448-1456. doi: 10.1038/s41430-020-0587-6

[The double burden of malnutrition in Vietnamese school-aged children and adolescents: a rapid shift over a decade in Ho Chi Minh City](https://espace.library.uq.edu.au/view/UQ:5abcbe6)

2020

Journal Article

##### Using GNU Make to manage the workflow of data analysis projects

Baker, Peter (2020). Using GNU Make to manage the workflow of data analysis projects. Journal of Statistical Software, 94 (Code Snippet 1), 1-46. doi: 10.18637/jss.v094.c01

[Using GNU Make to manage the workflow of data analysis projects](https://espace.library.uq.edu.au/view/UQ:46b10de)

2020

Journal Article

##### Association of maternal and social characteristics with age-standardised birthweight

Vilcins, Dwan, Baker, Peter, Jagals, Paul and Sly, Peter D. (2020). Association of maternal and social characteristics with age-standardised birthweight. Journal of Public Health, 30 (2), 373-383. doi: 10.1007/s10389-020-01292-1

[Association of maternal and social characteristics with age-standardised birthweight](https://espace.library.uq.edu.au/view/UQ:a524e53)

2019

Journal Article

##### Longitudinal impact of the Women’s Health Initiative study on hormone therapy use in Australia

Natari, R. B., McGuire, T. M., Baker, P. J., Clavarino, A. M., Dingle, K. D. and Hollingworth, S. A. (2019). Longitudinal impact of the Women’s Health Initiative study on hormone therapy use in Australia. Climacteric, 22 (5), 489-497. doi: 10.1080/13697137.2019.1593357

[Longitudinal impact of the Women’s Health Initiative study on hormone therapy use in Australia](https://espace.library.uq.edu.au/view/UQ:783912e)

2019

Journal Article

##### Response to letter to the editor: When does selection generate bias in clinical samples?

Saiepour, Nargess, Najman, Jackob M., Ware, Robert S., Baker, Peter, Clavarino, Alexandra and Williams, Gail M. (2019). Response to letter to the editor: When does selection generate bias in clinical samples?. Journal of Psychiatric Research, 116, 191-192. doi: 10.1016/j.jpsychires.2019.02.011

[Response to letter to the editor: When does selection generate bias in clinical samples?](https://espace.library.uq.edu.au/view/UQ:694e8d9)

2019

Journal Article

##### Understanding the prevalence of smoking among people living with HIV (PLHIV) in Australia and factors associated with smoking and quitting

Edwards, Stephanie K., Dean, Judith, Power, Jennifer, Baker, Peter and Gartner, Coral (2019). Understanding the prevalence of smoking among people living with HIV (PLHIV) in Australia and factors associated with smoking and quitting. AIDS and Behavior, 24 (4), 1056-1063. doi: 10.1007/s10461-019-02535-3

[Understanding the prevalence of smoking among people living with HIV (PLHIV) in Australia and factors associated with smoking and quitting](https://espace.library.uq.edu.au/view/UQ:99e1b6b)

2019

Journal Article

##### Better understanding the influence and complexity of beliefs on medication adherence in asthma

Foot, Holly, La Caze, Adam, Baker, Peter and Cottrell, Neil (2019). Better understanding the influence and complexity of beliefs on medication adherence in asthma. Patient Education and Counseling, 102 (3), 564-570. doi: 10.1016/j.pec.2018.10.010

[Better understanding the influence and complexity of beliefs on medication adherence in asthma](https://espace.library.uq.edu.au/view/UQ:ea57186)

2019

Journal Article

##### Does attrition affect estimates of association: a longitudinal study

Saiepour, N., Najman, J. M., Ware, R., Baker, P., Clavarino, A. and Williams, G. M. (2019). Does attrition affect estimates of association: a longitudinal study. Journal of Psychiatric Research, 110, 127-142. doi: 10.1016/j.jpsychires.2018.12.022

[Does attrition affect estimates of association: a longitudinal study](https://espace.library.uq.edu.au/view/UQ:0c922a8)

2018

Journal Article

##### Seroprevlance of Coxiella burnetii among abattoir and slaughterhouse workers: A meta-analysis

Woldeyohannes, Solomon M., Gilks, Charles F., Baker, Peter, Perkins, Nigel R. and Reid, Simon A. (2018). Seroprevlance of Coxiella burnetii among abattoir and slaughterhouse workers: A meta-analysis. One Health, 6, 23-28. doi: 10.1016/j.onehlt.2018.09.002

[Seroprevlance of Coxiella burnetii among abattoir and slaughterhouse workers: A meta-analysis](https://espace.library.uq.edu.au/view/UQ:9af0d8c)

2018

Journal Article

##### Effect of piperacillin-tazobactam vs meropenem on 30-day mortality for patients with E coli or Klebsiella pneumoniae bloodstream infection and ceftriaxone resistance: a randomized clinical trial

Harris, Patrick N. A., Tambyah, Paul A., Lye, David C., Mo, Yin, Lee, Tau H., Yilmaz, Mesut, Alenazi, Thamer H., Arabi, Yaseen, Falcone, Marco, Bassetti, Matteo, Righi, Elda, Rogers, Benjamin A., Kanj, Souha, Bhally, Hasan, Iredell, Jon, Mendelson, Marc, Boyles, Tom H., Looke, David, Miyakis, Spiros, Walls, Genevieve, Al Khamis, Mohammed, Zikri, Ahmed, Crowe, Amy, Ingram, Paul, Daneman, Nick, Griffin, Paul, Athan, Eugene, Lorenc, Penelope, Baker, Peter ... MERINO Trial Investigators and the Australasian Society for Infectious Disease Clinical Research Network (ASID-CRN) (2018). Effect of piperacillin-tazobactam vs meropenem on 30-day mortality for patients with E coli or Klebsiella pneumoniae bloodstream infection and ceftriaxone resistance: a randomized clinical trial. JAMA, 320 (10), 984-994. doi: 10.1001/jama.2018.12163

[Effect of piperacillin-tazobactam vs meropenem on 30-day mortality for patients with E coli or Klebsiella pneumoniae bloodstream infection and ceftriaxone resistance: a randomized clinical trial](https://espace.library.uq.edu.au/view/UQ:6bc3c9f)

2018

Conference Publication

##### Cessation And Relapse Prevention (CARP) trial

Gartner, Coral, Boyd, Mark, Bonevski, Billie, Gilks, Charles, Borland, Ron, Courtney, Ryan, Cobiac, Linda, McRobbie, Hayden, Baker, Peter and Mueller, Jochen (2018). Cessation And Relapse Prevention (CARP) trial. The Australasian Professional Society on Alcohol and other Drugs Conference, Auckland, New Zealand, 5 November 2018.

[Cessation And Relapse Prevention (CARP) trial](https://espace.library.uq.edu.au/view/UQ:39397ce)

2018

Conference Publication

##### Cessation and relapse prevention trial: Vaporised nicotine products for people on opiate substitution therapy, or who are living with hepatitis C or HIV

Gartner, Coral, Boyd, Mark, Bonevski, Billie, Gilks, Charles, Borland, Ron, Courtney, Ryan, Cobiac, Linda, McRobbie, Hayden, Baker, Peter and Mueller, Jochen (2018). Cessation and relapse prevention trial: Vaporised nicotine products for people on opiate substitution therapy, or who are living with hepatitis C or HIV. APSAD 2018 Conference, Auckland, New Zealand, 4–7 November 2018. Hoboken, NJ United States: Wiley.

[Cessation and relapse prevention trial: Vaporised nicotine products for people on opiate substitution therapy, or who are living with hepatitis C or HIV](https://espace.library.uq.edu.au/view/UQ:eec9dc0)

## Funding

### Past funding

- 2017 - 2022

  A Pragmatic Randomised Clinical Trial of Nicotine Vaporisers added to Smoking Cessation Treatment for Priority Populations Living with Comorbidities

  NHMRC Project Grant

  [Open grant](https://about.uq.edu.au/experts/project/30184)
- 2015 - 2018

  A harm reduction trial using novel nicotine replacement products among smokers who are living with HIV in Australia

  HIVFQ HIV Research Grants

  [Open grant](https://about.uq.edu.au/experts/project/26387)
- 2013 - 2015

  Very young adolescents and substance use: Community and family vulnerabilities and healthy developmental transitions.

  ARC Discovery Projects

  [Open grant](https://about.uq.edu.au/experts/project/15048)
- 2009 - 2010

  Advanced graphical modelling for causal inference in epidemiology

  UQ New Staff Research Start-Up Fund

  [Open grant](https://about.uq.edu.au/experts/project/44425)

## Supervision

### Availability

Dr Peter Baker is:
:   Available for supervision

Looking for a supervisor? Read our advice on [how to choose a supervisor](https://study.uq.edu.au/study-options/phd-mphil-professional-doctorate/how-to-choose-a-supervisor).

### Supervision history

#### Current supervision

- Doctor Philosophy

  ##### Unlocking the potential of crop resource use efficiencies

  Associate Advisor

  Other advisors:
  [Dr Erik Van Oosterom](https://about.uq.edu.au/experts/1137), [Dr Alex Wu](https://about.uq.edu.au/experts/11840)
- Doctor Philosophy

  ##### Dissection of genetics and physiology associated with improved transpiration efficiency in sorghum

  Associate Advisor

  Other advisors:
  [Dr Erik Van Oosterom](https://about.uq.edu.au/experts/1137), [Dr Alex Wu](https://about.uq.edu.au/experts/11840)
- Doctor Philosophy

  ##### Computer-aided sorghum crop design for optimising adaptation

  Associate Advisor

  Other advisors:
  [Dr Erik Van Oosterom](https://about.uq.edu.au/experts/1137), [Dr Alex Wu](https://about.uq.edu.au/experts/11840)

#### Completed supervision

- 2024

  Doctor Philosophy

  ##### [Effects of Seasonality and Ambient Temperature on Selected Biomarkers: Community-based population study in China](https://espace.library.uq.edu.au/view/UQ:fcb3461)

  Principal Advisor

  Other advisors:
  [Emeritus Professor Gail Williams](https://about.uq.edu.au/experts/668)
- 2019

  Doctor Philosophy

  ##### [Methodological approaches to impact evaluation of integrated HIV programs and services: quasi-experimental methods and multilevel models applied to two case studies in Peru](https://espace.library.uq.edu.au/view/UQ:109432e)

  Principal Advisor

  Other advisors:
  [Dr Hebe Gouda](https://about.uq.edu.au/experts/2536)
- 2021

  Doctor Philosophy

  ##### [Measurement and Loss to Follow-up in a Community-Based Cohort Study of Mental Health](https://espace.library.uq.edu.au/view/UQ:a65b443)

  Associate Advisor

  Other advisors:
  [Emeritus Professor Gail Williams](https://about.uq.edu.au/experts/668)
- 2020

  Doctor Philosophy

  ##### [Nutrition Transition in Papua New Guinea (PNG): An Assessment of the Nutrition Transition for Three Diverse Populations, Including the Contributing Factors, Food Insecurity, and Health Risks](https://espace.library.uq.edu.au/view/UQ:fa9c8be)

  Associate Advisor
- 2020

  Doctor Philosophy

  ##### [Novel green space measures and birthweight in Queensland, Australia](https://espace.library.uq.edu.au/view/UQ:bc2ffc6)

  Associate Advisor

  Other advisors:
  [Professor Peter Sly](https://about.uq.edu.au/experts/1996)
- 2019

  Doctor Philosophy

  ##### [Exploring the role of vaporised nicotine as a harm reduction approach amongst people living with HIV who smoke](https://espace.library.uq.edu.au/view/UQ:3135743)

  Associate Advisor

  Other advisors:
  [Associate Professor Judith Dean](https://about.uq.edu.au/experts/14669), [Professor Coral Gartner](https://about.uq.edu.au/experts/1704)
- 2019

  Doctor Philosophy

  ##### [The Epidemiology of Q fever in Queensland, Australia and Effectiveness of Vaccination for Prevention](https://espace.library.uq.edu.au/view/UQ:914990a)

  Associate Advisor

  Other advisors:
  [Professor Simon Reid](https://about.uq.edu.au/experts/2707)
- 2018

  Doctor Philosophy

  ##### [Regulating for-profit private health care providers in the context of universal health coverage: A case study from Mongolia](https://espace.library.uq.edu.au/view/UQ:a9b45b5)

  Associate Advisor

  Other advisors:
  [Dr Hebe Gouda](https://about.uq.edu.au/experts/2536)
- 2016

  Doctor Philosophy

  ##### [Exploring the Relationship between Health Beliefs and Medication Adherence in Individuals with Asthma](https://espace.library.uq.edu.au/view/UQ:415428)

  Associate Advisor

  Other advisors:
  [Associate Professor Adam La Caze](https://about.uq.edu.au/experts/1112)
- 2016

  Doctor Philosophy

  ##### [Misspecification and flexible random effect distributions in logistic mixed effects models applied to panel survey data](https://espace.library.uq.edu.au/view/UQ:410731)

  Associate Advisor
- 2014

  Doctor Philosophy

  ##### [The effects of ambient temperature on lung function and respiratory symptoms for Australian school children with asthma: a panel study](https://espace.library.uq.edu.au/view/UQ:339255)

  Associate Advisor

  Other advisors:
  [Emeritus Professor Gail Williams](https://about.uq.edu.au/experts/668)

View all 11 completed supervisions
View less

## Media

### Enquiries

For media enquiries about Dr Peter Baker's areas of expertise, story ideas and help finding experts, contact our Media team:

[communications@uq.edu.au](mailto:communications@uq.edu.au)

## External profiles

- [ORCID](https://orcid.org/0000-0002-1241-7263)
- [ResearcherID](https://www.webofscience.com/wos/author/record/J-2055-2012)
- [Scopus](https://www.scopus.com/authid/detail.uri?authorId=57206197526)
- [Google Scholar](https://scholar.google.com.au/citations?user=Qg76DbsAAAAJ)

## Personal links

- [Personal profile](https://public-health.uq.edu.au/profile/1002/dr-peter-baker)
- [GitHub](https://github.com/petebaker)
- [GitLab](https://gitlab.com/petebaker)
- [Personal Website](https://www.petebaker.id.au)

## Social media

- [X](https://twitter.com/drpetebaker)

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